Simulating Curved Lipid Membranes Using Anchored Frozen Patches
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| Název: | Simulating Curved Lipid Membranes Using Anchored Frozen Patches |
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| Autoři: | James F. Tallman, Antonia Statt |
| Zdroj: | The Journal of Physical Chemistry B. 129:6009-6022 |
| Publication Status: | Preprint |
| Informace o vydavateli: | American Chemical Society (ACS), 2025. |
| Rok vydání: | 2025 |
| Témata: | Biological Physics (physics.bio-ph), Soft Condensed Matter (cond-mat.soft), FOS: Physical sciences, Physics - Biological Physics, Condensed Matter - Soft Condensed Matter |
| Popis: | Lipid bilayers often form high-curvature configurations due to self-assembly conditions or certain biological processes. However, particle-based simulations of lipid membranes are predominantly of flat lipid membranes because planar membranes are easily connected over periodic boundary conditions. To simulate a curved lipid membrane, one can simulate an entire vesicle, a cylinder, or a bicelle (disk-like bilayer aggregate). One can also use artificial methods to control curvature, such as applying virtual walls of beads, radial harmonic potentials, or ``tape up the edges''. These existing methods have limitations due to the method by which curvature is imposed. Herein, we propose an alternative method of introducing arbitrary curvature by anchoring a curved lipid membrane with ``frozen'' equilibrated membrane patches. The method presented here is compatible with all particle-based lipid models and easily extended to many geometries. As an example, we simulate curved membranes with DPPC, DOPC, DLPC and DOPE lipids as parameterized by the Martini3 coarse-grained model. This method introduces limited finite-size artifacts, prevents lipid flip-flop at membrane edges, and allows fluctuations of the free membrane center. We provide verification of the method on flat membranes and discussion on extracting shape and per-leaflet quantities (thickness, order parameter) from curved membranes. Curvature produces asymmetric changes in lipid leaflet properties. Finally, we explore the coupled effect of curvature and membrane asymmetry in both number and lipid type. We report the resulting unique morphologies (inducing gel phase, faceting) and behaviors (thickness dependent on adjacent leaflet type) that are accessible with this method. 12 pages, 10 figures |
| Druh dokumentu: | Article |
| Jazyk: | English |
| ISSN: | 1520-5207 1520-6106 |
| DOI: | 10.1021/acs.jpcb.5c02518 |
| DOI: | 10.48550/arxiv.2501.17989 |
| Přístupová URL adresa: | http://arxiv.org/abs/2501.17989 |
| Rights: | STM Policy #29 CC BY SA |
| Přístupové číslo: | edsair.doi.dedup.....8baeb81cd9d60301d45445c3299859a4 |
| Databáze: | OpenAIRE |
Nájsť tento článok vo Web of Science | Abstrakt: | Lipid bilayers often form high-curvature configurations due to self-assembly conditions or certain biological processes. However, particle-based simulations of lipid membranes are predominantly of flat lipid membranes because planar membranes are easily connected over periodic boundary conditions. To simulate a curved lipid membrane, one can simulate an entire vesicle, a cylinder, or a bicelle (disk-like bilayer aggregate). One can also use artificial methods to control curvature, such as applying virtual walls of beads, radial harmonic potentials, or ``tape up the edges''. These existing methods have limitations due to the method by which curvature is imposed. Herein, we propose an alternative method of introducing arbitrary curvature by anchoring a curved lipid membrane with ``frozen'' equilibrated membrane patches. The method presented here is compatible with all particle-based lipid models and easily extended to many geometries. As an example, we simulate curved membranes with DPPC, DOPC, DLPC and DOPE lipids as parameterized by the Martini3 coarse-grained model. This method introduces limited finite-size artifacts, prevents lipid flip-flop at membrane edges, and allows fluctuations of the free membrane center. We provide verification of the method on flat membranes and discussion on extracting shape and per-leaflet quantities (thickness, order parameter) from curved membranes. Curvature produces asymmetric changes in lipid leaflet properties. Finally, we explore the coupled effect of curvature and membrane asymmetry in both number and lipid type. We report the resulting unique morphologies (inducing gel phase, faceting) and behaviors (thickness dependent on adjacent leaflet type) that are accessible with this method.<br />12 pages, 10 figures |
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| ISSN: | 15205207 15206106 |
| DOI: | 10.1021/acs.jpcb.5c02518 |