A protocol for the use of cloud-based quantum computers for logical network analysis of biological systems
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| Název: | A protocol for the use of cloud-based quantum computers for logical network analysis of biological systems |
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| Autoři: | Felix M. Weidner, Mirko Rossini, Joachim Ankerhold, Hans A. Kestler |
| Zdroj: | STAR Protoc STAR Protocols, Vol 4, Iss 3, Pp 102438-(2023) |
| Informace o vydavateli: | Elsevier BV, 2023. |
| Rok vydání: | 2023 |
| Témata: | Q1-390, Science (General), Computers, Logic, Systems Biology, Protocol, Gene Regulatory Networks, Cloud Computing, Systems biology, Computers [MeSH], Gene Regulatory Networks [MeSH], Systems Biology [MeSH], Logic [MeSH], Cloud Computing [MeSH], Computer sciences |
| Popis: | Boolean networks are commonly used in systems biology to dynamically model gene regulatory interactions. Here, we present a protocol for implementing Boolean network dynamics as quantum circuits. We describe steps for accessing cloud-based quantum processing units offered by IBM and IonQ and downloading and parsing logic for gene regulatory networks. We then detail procedures for performing simulations of quantum circuits on local devices and visualizing measurement results. For complete details on the use and execution of this protocol, please refer to Weidner et al.1. |
| Druh dokumentu: | Article Other literature type |
| Jazyk: | English |
| ISSN: | 2666-1667 |
| DOI: | 10.1016/j.xpro.2023.102438 |
| Přístupová URL adresa: | https://pubmed.ncbi.nlm.nih.gov/37549034 https://doaj.org/article/17be87e53cfc42e8a760e563420a5d47 https://repository.publisso.de/resource/frl:6475565 |
| Rights: | CC BY |
| Přístupové číslo: | edsair.doi.dedup.....84c03a8482d462db14856d9955f37b3a |
| Databáze: | OpenAIRE |
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Nájsť tento článok vo Web of Science | Abstrakt: | Boolean networks are commonly used in systems biology to dynamically model gene regulatory interactions. Here, we present a protocol for implementing Boolean network dynamics as quantum circuits. We describe steps for accessing cloud-based quantum processing units offered by IBM and IonQ and downloading and parsing logic for gene regulatory networks. We then detail procedures for performing simulations of quantum circuits on local devices and visualizing measurement results. For complete details on the use and execution of this protocol, please refer to Weidner et al.1. |
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| ISSN: | 26661667 |
| DOI: | 10.1016/j.xpro.2023.102438 |