Analysis of Sequence Diversity in Subfamilies of Phytochrome-Linked Effectors
Uloženo v:
| Název: | Analysis of Sequence Diversity in Subfamilies of Phytochrome-Linked Effectors |
|---|---|
| Autoři: | Böhm, Cornelia, Totaro, Massimo |
| Zdroj: | Methods in Molecular Biology ISBN: 9781071647905 |
| Publication Status: | Preprint |
| Informace o vydavateli: | Springer US, 2025. |
| Rok vydání: | 2025 |
| Témata: | visualisation, sequence alignment, bacteriophytochromes, network analysis, Sequence similarity network |
| Popis: | Sequence Similarity Networks allow the integration of protein sequence relationships with complementary data such as functional or spectral information, enabling the visualisation of potential functional connections. Here we describe the use of BLAST-generated E-values or Bit-scores within a network of bacteriophytochrome homologs to emphasize various characteristics of interest and their sequence-level conservation. |
| Druh dokumentu: | Part of book or chapter of book |
| Jazyk: | English |
| DOI: | 10.1007/978-1-0716-4791-2_2 |
| DOI: | 10.5281/zenodo.15228784 |
| DOI: | 10.5281/zenodo.15228783 |
| Rights: | Springer Nature TDM CC BY |
| Přístupové číslo: | edsair.doi.dedup.....2b7ad37d86b5a36fc273124da65d9353 |
| Databáze: | OpenAIRE |
Nájsť tento článok vo Web of Science | Abstrakt: | Sequence Similarity Networks allow the integration of protein sequence relationships with complementary data such as functional or spectral information, enabling the visualisation of potential functional connections. Here we describe the use of BLAST-generated E-values or Bit-scores within a network of bacteriophytochrome homologs to emphasize various characteristics of interest and their sequence-level conservation. |
|---|---|
| DOI: | 10.1007/978-1-0716-4791-2_2 |