The Marchantia polymorpha pangenome reveals ancient mechanisms of plant adaptation to the environment
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| Title: | The Marchantia polymorpha pangenome reveals ancient mechanisms of plant adaptation to the environment |
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| Authors: | Chloé Beaulieu, Cyril Libourel, Duchesse Lacourt Mbadinga Zamar, Karima El Mahboubi, David J. Hoey, George R. L. Greiff, Jean Keller, Camille Girou, Helene San Clemente, Issa Diop, Emilie Amblard, Baptiste Castel, Anthony Théron, Stéphane Cauet, Nathalie Rodde, Sabine Zachgo, Wiebke Halpape, Anja Meierhenrich, Bianca Laker, Andrea Bräutigam, Edwige Moyroud, Alan Wanke, Alessandra Bonfanti, Stefano Gatti, Alexander Summers, Elisabeth Burmeister, Kathy Grube, Andreea Alexa, Nataliia Kuksa, Lauren Gardiner, Martin Balcerowicz, Jemma Salmon, Bryony Yates, Lucie Riglet, Elena Salvi, Peter Szovenyi, Shifeng Cheng, Yasuhiro Tanizawa, Simon Aziz, James H. Leebens-Mack, Jeremy Schmutz, Jenell Webber, Jane Grimwood, Christophe Jacquet, Christophe Dunand, Jessica M. Nelson, Fabrice Roux, Hervé Philippe, Sebastian Schornack, Maxime Bonhomme, Pierre-Marc Delaux |
| Contributors: | SEGUIN, Nathalie, Apollo - University of Cambridge Repository, LRSV-Evolution des Interactions Plantes-Microorganismes (LRSV-EIPM), Laboratoire de Recherche en Sciences Végétales (LRSV), Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT), Physiologie, Pathologie et Génétique Végétales (PPGV), Ecole d'Ingénieurs de Purpan (INP - PURPAN), Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT), LRSV-Peptides et petits ARN (LRSV-PPA), Centre National de Ressources Génomiques Végétales (CNRGV), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Laboratoire des Interactions Plantes Microbes Environnement (LIPME), Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Station d'Ecologie Théorique et Expérimentale (SETE), Centre National de la Recherche Scientifique (CNRS)-Fédération de Recherche Agrobiosciences, Interactions et Biodiversité (FR AIB), Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS), ANR-10-LABX-0041,TULIP,Towards a Unified theory of biotic Interactions: the roLe of environmental(2010), ANR-21-CE20-0010,LEVEL-UP,Exploitation de la diversité génétique de l'hépatique modèle Marchantia polymorpha pour découvrir de nouveaux mécanismes impliqués dans l'immunité végétale.(2021), European Project: 722338, PlantHUB-No. 722338 |
| Source: | Nat Genet Nature Genetics, vol 57, iss 3 |
| Publisher Information: | Springer Science and Business Media LLC, 2025. |
| Publication Year: | 2025 |
| Subject Terms: | SELECTION, SLCU Outreach Consortium, LINKAGE DISEQUILIBRIUM, Evolution, Physiological, Agricultural biotechnology, PROTEIN, GENOMES, Medical and Health Sciences, ANNOTATION, Article, [SDV.GEN.GPL]Life Sciences [q-bio]/Genetics/Plants genetics, Evolution, Molecular, [SDV.GEN.GPL] Life Sciences [q-bio]/Genetics/Plants genetics, Genetics, [SDV.BID.EVO] Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE], LAND PLANTS, Marchantia, Adaptation, Phylogeny, Plant Proteins, Evolutionary Biology, [SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE], Genome, ORIGIN, [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE], Molecular, Genetic Variation, Plant, Biological Sciences, Bioinformatics and computational biology, Adaptation, Physiological, EVOLUTION, READ ALIGNMENT, DISCOVERY, [SDV.GEN.GPO] Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE], Marchantia polymorpha, pan-genom, intraspecific diversity, plant evolution, gene family evolution, polymorphisms, Genome, Plant, Developmental Biology |
| Description: | Plant adaptation to terrestrial life started 450 million years ago and has played a major role in the evolution of life on Earth. The genetic mechanisms allowing this adaptation to a diversity of terrestrial constraints have been mostly studied by focusing on flowering plants. Here, we gathered a collection of 133 accessions of the model bryophyte Marchantia polymorpha and studied its intraspecific diversity using selection signature analyses, a genome-environment association study and a pangenome. We identified adaptive features, such as peroxidases or nucleotide-binding and leucine-rich repeats (NLRs), also observed in flowering plants, likely inherited from the first land plants. The M. polymorpha pangenome also harbors lineage-specific accessory genes absent from seed plants. We conclude that different land plant lineages still share many elements from the genetic toolkit evolved by their most recent common ancestor to adapt to the terrestrial habitat, refined by lineage-specific polymorphisms and gene family evolution. |
| Document Type: | Article Other literature type |
| File Description: | application/pdf; application/zip; text/xml |
| Language: | English |
| ISSN: | 1546-1718 1061-4036 |
| DOI: | 10.1038/s41588-024-02071-4 |
| Access URL: | https://pubmed.ncbi.nlm.nih.gov/39962240 https://pub.uni-bielefeld.de/record/3001175 https://doi.org/10.1038/s41588-024-02071-4 https://hdl.handle.net/11573/1739877 https://doi.org/10.1038/s41588-024-02071-4 https://hdl.handle.net/11568/1313907 https://doi.org/10.1038/s41588-024-02071-4 https://hal.science/hal-04956797v1/document https://hal.science/hal-04956797v1 https://doi.org/10.1038/s41588-024-02071-4 https://www.repository.cam.ac.uk/handle/1810/381486 https://doi.org/10.1038/s41588-024-02071-4 https://escholarship.org/uc/item/7218f870 https://escholarship.org/content/qt7218f870/qt7218f870.pdf |
| Rights: | CC BY NC ND "In Copyright" Rights Statement CC BY |
| Accession Number: | edsair.doi.dedup.....2a4c4111d399a8a48fd162c07116ee7f |
| Database: | OpenAIRE |
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Nájsť tento článok vo Web of Science | Abstract: | Plant adaptation to terrestrial life started 450 million years ago and has played a major role in the evolution of life on Earth. The genetic mechanisms allowing this adaptation to a diversity of terrestrial constraints have been mostly studied by focusing on flowering plants. Here, we gathered a collection of 133 accessions of the model bryophyte Marchantia polymorpha and studied its intraspecific diversity using selection signature analyses, a genome-environment association study and a pangenome. We identified adaptive features, such as peroxidases or nucleotide-binding and leucine-rich repeats (NLRs), also observed in flowering plants, likely inherited from the first land plants. The M. polymorpha pangenome also harbors lineage-specific accessory genes absent from seed plants. We conclude that different land plant lineages still share many elements from the genetic toolkit evolved by their most recent common ancestor to adapt to the terrestrial habitat, refined by lineage-specific polymorphisms and gene family evolution. |
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| ISSN: | 15461718 10614036 |
| DOI: | 10.1038/s41588-024-02071-4 |