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Abstractions for Genomics.

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Název: Abstractions for Genomics.
Autoři: Bafna, Vineet1 (AUTHOR) vbafna@cs.ucsd.edu, Deutsch, Alin2 (AUTHOR) abdeutsch@ucsd.edu, Heiberg, Andrew3 (AUTHOR) aheiberg@eng.ucsd.edu, Kozanitis, Christos4 (AUTHOR) ckozanit@eng.ucsd.edu, Ohno-Machado, Lucila5,6 (AUTHOR) machado@ucsd.edu, Varghese, George7 (AUTHOR) gvarghese@ucsd.edu
Zdroj: Communications of the ACM. Jan2013, Vol. 56 Issue 1, p83-93. 11p. 1 Color Photograph, 2 Diagrams, 2 Graphs.
Témata: *INFORMATION storage & retrieval systems, *COMPUTER programming, *COMPUTER software development, *COMPUTER science, *COMPUTER software, GENOMICS, ELECTRONIC data processing software
Abstrakt: The article discusses the development of genomic databases with interactive access for the storage of information on human DNA which requires layered abstractions in genome data processing. Topics include the three layers for genome processing called the instrument layer, the evidence layer, and the inference layer; the GQL declarative query computer language for automatic optimization and privacy checks; and information on the data management and storage aspects of DNA genomics sequencing and processing.
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  Data: Abstractions for Genomics.
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  Data: <searchLink fieldCode="AR" term="%22Bafna%2C+Vineet%22">Bafna, Vineet</searchLink><relatesTo>1</relatesTo> (AUTHOR)<i> vbafna@cs.ucsd.edu</i><br /><searchLink fieldCode="AR" term="%22Deutsch%2C+Alin%22">Deutsch, Alin</searchLink><relatesTo>2</relatesTo> (AUTHOR)<i> abdeutsch@ucsd.edu</i><br /><searchLink fieldCode="AR" term="%22Heiberg%2C+Andrew%22">Heiberg, Andrew</searchLink><relatesTo>3</relatesTo> (AUTHOR)<i> aheiberg@eng.ucsd.edu</i><br /><searchLink fieldCode="AR" term="%22Kozanitis%2C+Christos%22">Kozanitis, Christos</searchLink><relatesTo>4</relatesTo> (AUTHOR)<i> ckozanit@eng.ucsd.edu</i><br /><searchLink fieldCode="AR" term="%22Ohno-Machado%2C+Lucila%22">Ohno-Machado, Lucila</searchLink><relatesTo>5,6</relatesTo> (AUTHOR)<i> machado@ucsd.edu</i><br /><searchLink fieldCode="AR" term="%22Varghese%2C+George%22">Varghese, George</searchLink><relatesTo>7</relatesTo> (AUTHOR)<i> gvarghese@ucsd.edu</i>
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  Data: <searchLink fieldCode="JN" term="%22Communications+of+the+ACM%22">Communications of the ACM</searchLink>. Jan2013, Vol. 56 Issue 1, p83-93. 11p. 1 Color Photograph, 2 Diagrams, 2 Graphs.
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  Data: *<searchLink fieldCode="DE" term="%22INFORMATION+storage+%26+retrieval+systems%22">INFORMATION storage & retrieval systems</searchLink><br />*<searchLink fieldCode="DE" term="%22COMPUTER+programming%22">COMPUTER programming</searchLink><br />*<searchLink fieldCode="DE" term="%22COMPUTER+software+development%22">COMPUTER software development</searchLink><br />*<searchLink fieldCode="DE" term="%22COMPUTER+science%22">COMPUTER science</searchLink><br />*<searchLink fieldCode="DE" term="%22COMPUTER+software%22">COMPUTER software</searchLink><br /><searchLink fieldCode="DE" term="%22GENOMICS%22">GENOMICS</searchLink><br /><searchLink fieldCode="DE" term="%22ELECTRONIC+data+processing+software%22">ELECTRONIC data processing software</searchLink>
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  Data: The article discusses the development of genomic databases with interactive access for the storage of information on human DNA which requires layered abstractions in genome data processing. Topics include the three layers for genome processing called the instrument layer, the evidence layer, and the inference layer; the GQL declarative query computer language for automatic optimization and privacy checks; and information on the data management and storage aspects of DNA genomics sequencing and processing.
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RecordInfo BibRecord:
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      – Type: doi
        Value: 10.1145/2398356.2398376
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      – Code: eng
        Text: English
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        PageCount: 11
        StartPage: 83
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      – SubjectFull: INFORMATION storage & retrieval systems
        Type: general
      – SubjectFull: COMPUTER programming
        Type: general
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      – SubjectFull: GENOMICS
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      – SubjectFull: ELECTRONIC data processing software
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      – TitleFull: Abstractions for Genomics.
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            NameFull: Ohno-Machado, Lucila
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            – D: 01
              M: 01
              Text: Jan2013
              Type: published
              Y: 2013
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