TRviz: a Python library for decomposing and visualizing tandem repeat sequences.
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| Title: | TRviz: a Python library for decomposing and visualizing tandem repeat sequences. |
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| Authors: | Park, Jonghun1 jonghunpark@ucsd.edu, Kaufman, Eli2, Valdmanis, Paul N2, Bafna, Vineet1 jonghunpark@ucsd.edu |
| Source: | Bioinformatics Advances. 2023, Vol. 3 Issue 1, p1-4. 4p. |
| Subject Terms: | *VISUALIZATION, *PYTHON programming language, *OPEN source software, *ALLELES, *BIOINFORMATICS |
| Abstract: | Summary TRviz is an open-source Python library for decomposing, encoding, aligning and visualizing tandem repeat (TR) sequences. TRviz takes a collection of alleles (TR containing sequences) and one or more motifs as input and generates a plot showing the motif composition of the TR sequences. Availability and implementation TRviz is an open-source Python library and freely available at https://github.com/Jong-hun-Park/trviz. Detailed documentation is available at https://trviz.readthedocs.io. Supplementary information Supplementary data are available at Bioinformatics Advances online. [ABSTRACT FROM AUTHOR] |
| Database: | Academic Search Index |
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