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TRviz: a Python library for decomposing and visualizing tandem repeat sequences.

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Název: TRviz: a Python library for decomposing and visualizing tandem repeat sequences.
Autoři: Park, Jonghun1 jonghunpark@ucsd.edu, Kaufman, Eli2, Valdmanis, Paul N2, Bafna, Vineet1 jonghunpark@ucsd.edu
Zdroj: Bioinformatics Advances. 2023, Vol. 3 Issue 1, p1-4. 4p.
Témata: *VISUALIZATION, *PYTHON programming language, *OPEN source software, *ALLELES, *BIOINFORMATICS
Abstrakt: Summary TRviz is an open-source Python library for decomposing, encoding, aligning and visualizing tandem repeat (TR) sequences. TRviz takes a collection of alleles (TR containing sequences) and one or more motifs as input and generates a plot showing the motif composition of the TR sequences. Availability and implementation TRviz is an open-source Python library and freely available at https://github.com/Jong-hun-Park/trviz. Detailed documentation is available at https://trviz.readthedocs.io. Supplementary information Supplementary data are available at Bioinformatics Advances online. [ABSTRACT FROM AUTHOR]
Databáze: Academic Search Index
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Abstrakt:Summary TRviz is an open-source Python library for decomposing, encoding, aligning and visualizing tandem repeat (TR) sequences. TRviz takes a collection of alleles (TR containing sequences) and one or more motifs as input and generates a plot showing the motif composition of the TR sequences. Availability and implementation TRviz is an open-source Python library and freely available at https://github.com/Jong-hun-Park/trviz. Detailed documentation is available at https://trviz.readthedocs.io. Supplementary information Supplementary data are available at Bioinformatics Advances online. [ABSTRACT FROM AUTHOR]
DOI:10.1093/bioadv/vbad058