Microarray Gene Expression Data Analysis
This chapter contains sections titled: Introduction DNA Microarray Technology and Experiment Image Analysis and Expression Data Extraction Data Processing Missing Value Imputation Temporal Gene Expression Profile Analysis Cyclic Gene Expression Profiles Detection Summary Acknowledgments References
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| Vydáno v: | Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications s. 623 - 650 |
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| Hlavní autoři: | , |
| Médium: | Kapitola |
| Jazyk: | angličtina |
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Hoboken, NJ, USA
John Wiley & Sons, Inc
18.01.2011
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| Edice: | Wiley Series on Bioinformatics: Computational Techniques and Engineering |
| Témata: | |
| ISBN: | 0470505192, 9780470505199 |
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| Abstract | This chapter contains sections titled:
Introduction
DNA Microarray Technology and Experiment
Image Analysis and Expression Data Extraction
Data Processing
Missing Value Imputation
Temporal Gene Expression Profile Analysis
Cyclic Gene Expression Profiles Detection
Summary
Acknowledgments
References |
|---|---|
| AbstractList | This chapter contains sections titled:
Introduction
DNA Microarray Technology and Experiment
Image Analysis and Expression Data Extraction
Data Processing
Missing Value Imputation
Temporal Gene Expression Profile Analysis
Cyclic Gene Expression Profiles Detection
Summary
Acknowledgments
References |
| Author | Liew, Alan Wee‐Chung Gan, Xiangchao |
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| Copyright | Copyright © 2011 John Wiley & Sons, Inc. |
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| DOI | 10.1002/9780470892107.ch28 |
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| Editor | Elloumi, Mourad Zomaya, Albert Y. |
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| EndPage | 650 |
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| References | Bø, Dysvik, Jonassen (cit2) 2004; 32 Lockhart, Winzeler (cit19) 2000; 405 Rustici, Mata, Kivinen, Lió, Penkett, Burns, Hayles, Brazma, Nurse, Bähler (cit25) 2004; 36 DeRisi, Lyer, Brown (cit7) 1997; 278 Du, Wu, Liew, Smith, Yan (cit8) 2008; 4 Glynn, Chen, Mushegian (cit13) 2006; 22 Yang, Buckley, Dudoit, Speed (cit32) 2000 Mitchison (cit20) 2003; 226 Chen, Dougherty, Bittner (cit4) 1997; 2 Smyth, Speed (cit29) 2003; 31 Panda, Antoch, Miller, Su, Schook, Straume, Schultz, Kay, Takahashi, Hogenesch (cit23) 2002; 109 Liew, Law, Cao, Yan (cit18) 2009; 42 Yang, Dudoit, Luu, Lin, Peng, Ngai, Speed (cit33) 2002; 30 Crosthwaite (cit6) 2004; 567 Kim, Golub, Park (cit14) 2005; 21 Schibler, Naef (cit27) 2005; 17 Gasch, Spellman, Kao, Carmel‐Harel, Eisen, Storz, Botstein, Brown (cit12) 2000; 11 Oba, Sato, Takemasa, Monden, Matsubara, Ishii (cit21) 2003; 19 Pease, Solas, Sullivan, Cronin, Holmes, Fodor (cit24) 1994; 91 Eisen, Spellman, Brown, Botstein (cit9) 1998; 95 Shedden, Cooper (cit28) 2002; 99 Gan, Liew, Yan (cit11) 2006; 34 Troyanskaya, Cantor, Sherlock, Brown, Hastie, Tibshirani, Botstein, Altman (cit31) 2001; 17 Bozdech, Llinas, Pulliam, Wong, Zhu, DeRisi (cit3) 2003; 1 Bar‐Joseph, Farkash, Gifford, Simon, Rosenfeld (cit1) 2004; 20 Schena, Shalon, Davis, Brown (cit26) 1995; 270 Liew, Yan, Yang (cit16) 2003; 36 Kooperberg, Fazzio, Delrow, Tsukiyama (cit15) 2002; 9 Yeung, Szeto, Liew, Yan (cit34) 2004; 20 Chu, DeRisi, Eisen, Mulholland, Botstein, Brown, Herskowitz (cit5) 1998; 282 Liew, Xian, Wu, Smith, Yan (cit17) 2007; 8 Spellman, Sherlock, Zhang, Iyer, Anders, Eisen, Brown, Botstein, Futcher (cit30) 1998; 9 Filkov, Skiena, Zhi (cit10) 2002; 9 Ouyang, Welsh, Georgopoulos (cit22) 2004; 20 |
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ident: cit33 article-title: Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation publication-title: Nucleic Acids Res – volume: 20 start-page: 917 year: 2004 end-page: 923 ident: cit22 article-title: Gaussian mixture clustering and imputation of microarray data publication-title: Bioinformatics – volume: 91 start-page: 5022 year: 1994 end-page: 5026 ident: cit24 article-title: Light‐generated oligonucleotide arrays for rapid DNA sequence analysis publication-title: PNAS – volume: 1 start-page: 1 year: 2003 end-page: 16 ident: cit3 article-title: The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum publication-title: PLoS Biology – volume: 4 start-page: 337 issue: 3 year: 2008 end-page: 349 ident: cit8 article-title: Spectral analysis of microarray gene expression time series data of Plasmodium Falciparum publication-title: Int J Bioinform Res Appl – volume: 109 start-page: 307 year: 2002 end-page: 320 ident: cit23 article-title: Coordinated transcription of key pathways in the mouse by the circadian clock publication-title: Cell – volume: 226 start-page: 165 year: 2003 end-page: 258 ident: cit20 article-title: Growth during the cell cycle publication-title: Int Rev Cytol – volume: 567 start-page: 49 year: 2004 end-page: 54 ident: cit6 article-title: Circadian clocks and natural antisense RNA publication-title: FEBS Lett – volume: 9 start-page: 3273 year: 1998 end-page: 3297 ident: cit30 article-title: Comprehensive identification of cell cycle‐regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization publication-title: Mol Biol Cell – volume: 282 start-page: 699 year: 1998 end-page: 705 ident: cit5 article-title: The transcriptional program of sporulation in budding yeast publication-title: Science – volume: 17 start-page: 520 year: 2001 end-page: 525 ident: cit31 article-title: Missing values estimation methods for DNA microarrays 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publication-title: Nucleic Acids Res – volume: 278 start-page: 680 year: 1997 end-page: 686 ident: cit7 article-title: Exploring the metabolic and genetic control of gene expression on a genomic scale publication-title: Science – volume: 99 start-page: 4379 year: 2002 end-page: 4384 ident: cit28 article-title: Analysis of cell‐cycle‐specific gene expression in human cells as determined by microarrays and double‐thymidine block synchronization publication-title: Proc Natl Acad Sci U S A – volume: 19 start-page: 2088 year: 2003 end-page: 2096 ident: cit21 article-title: A Bayesian missing values estimation method for gene expression profile data publication-title: Bioinformatics – volume: 2 start-page: 364 year: 1997 end-page: 374 ident: cit4 article-title: Ratio‐based decisions and the quantitative analysis of cDNA microarray images publication-title: J. Biomed Optic – volume: 95 start-page: 14863 year: 1998 end-page: 14868 ident: cit9 article-title: Cluster analysis and display of genome‐wide expression patterns publication-title: Proc Natl Acad Sci U S A – volume: 20 start-page: i23 year: 2004 end-page: i30 ident: cit1 article-title: Deconvolving cell cycle expression data with complementary information publication-title: Bioinformatics – year: 2000 ident: cit32 article-title: Comparison of methods for image analysis in cDNA microarray data – volume: 8 start-page: 137 year: 2007 ident: cit17 article-title: Spectral estimation in unevenly sampled space of periodically expressed microarray time series data publication-title: BMC Bioinformatics |
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Introduction
DNA Microarray Technology and Experiment
Image Analysis and Expression Data Extraction
Data Processing... |
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| SubjectTerms | goal in image analysis, quantifying automatically spot giving information ‐ relative extent of hybridization of two cDNA samples microarray data analysis, and microarray gene expression data analysis ‐ gene expressing profiling, process of determining when, where genes are expressed missing value imputation ‐ missing values, implication for subsequent data analysis |
| Title | Microarray Gene Expression Data Analysis |
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