efam: an expanded, metaproteome-supported HMM profile database of viral protein families

Abstract Motivation Viruses infect, reprogram and kill microbes, leading to profound ecosystem consequences, from elemental cycling in oceans and soils to microbiome-modulated diseases in plants and animals. Although metagenomic datasets are increasingly available, identifying viruses in them is cha...

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Bibliographic Details
Published in:	Bioinformatics (Oxford, England) Vol. 37; no. 22; pp. 4202 - 4208
Main Authors:	Zayed, Ahmed A, Lücking, Dominik, Mohssen, Mohamed, Cronin, Dylan, Bolduc, Ben, Gregory, Ann C, Hargreaves, Katherine R, Piehowski, Paul D, White III, Richard A, Huang, Eric L, Adkins, Joshua N, Roux, Simon, Moraru, Cristina, Sullivan, Matthew B
Format:	Journal Article
Language:	English
Published:	England Oxford University Press 15.11.2021 Oxford Publishing Limited (England)
Subjects:	Animals Annotations Aquatic habitats Availability BASIC BIOLOGICAL SCIENCES Bioinformatics Datasets Ecosystems INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY Marine ecosystems Marine resources Markov chains MATHEMATICS AND COMPUTING Metagenomics Metagenomics - methods Microbiomes Microbiota Oceans Original Papers Plant diseases Protein families Protein folding Proteins Software Viral Proteins Virions Viruses
ISSN:	1367-4803, 1367-4811, 1367-4811
Online Access:	Get full text
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