BioCircos.js: an interactive Circos JavaScript library for biological data visualization on web applications
We here present BioCircos.js, an interactive and lightweight JavaScript library especially for biological data interactive visualization. BioCircos.js facilitates the development of web-based applications for circular visualization of various biological data, such as genomic features, genetic variat...
Uloženo v:
| Vydáno v: | Bioinformatics Ročník 32; číslo 11; s. 1740 - 1742 |
|---|---|
| Hlavní autoři: | , , , , , , , , |
| Médium: | Journal Article |
| Jazyk: | angličtina |
| Vydáno: |
England
01.06.2016
|
| Témata: | |
| ISSN: | 1367-4811, 1367-4803, 1367-4811, 1460-2059 |
| On-line přístup: | Získat plný text |
| Tagy: |
Přidat tag
Žádné tagy, Buďte první, kdo vytvoří štítek k tomuto záznamu!
|
| Abstract | We here present BioCircos.js, an interactive and lightweight JavaScript library especially for biological data interactive visualization. BioCircos.js facilitates the development of web-based applications for circular visualization of various biological data, such as genomic features, genetic variations, gene expression and biomolecular interactions.
BioCircos.js and its manual are freely available online at http://bioinfo.ibp.ac.cn/biocircos/
rschen@ibp.ac.cn
Supplementary data are available at Bioinformatics online. |
|---|---|
| AbstractList | We here present BioCircos.js, an interactive and lightweight JavaScript library especially for biological data interactive visualization. BioCircos.js facilitates the development of web-based applications for circular visualization of various biological data, such as genomic features, genetic variations, gene expression and biomolecular interactions.Availability and implementation: BioCircos.js and its manual are freely available online at http://bioinfo.ibp.ac.cn/biocircos/.Contact: rschenbp.ac.cnSupplementary information: Supplementary data are available at Bioinformatics online. We here present BioCircos.js, an interactive and lightweight JavaScript library especially for biological data interactive visualization. BioCircos.js facilitates the development of web-based applications for circular visualization of various biological data, such as genomic features, genetic variations, gene expression and biomolecular interactions. BioCircos.js and its manual are freely available online at http://bioinfo.ibp.ac.cn/biocircos/ rschen@ibp.ac.cn Supplementary data are available at Bioinformatics online. We here present BioCircos.js, an interactive and lightweight JavaScript library especially for biological data interactive visualization. BioCircos.js facilitates the development of web-based applications for circular visualization of various biological data, such as genomic features, genetic variations, gene expression and biomolecular interactions.UNLABELLEDWe here present BioCircos.js, an interactive and lightweight JavaScript library especially for biological data interactive visualization. BioCircos.js facilitates the development of web-based applications for circular visualization of various biological data, such as genomic features, genetic variations, gene expression and biomolecular interactions.BioCircos.js and its manual are freely available online at http://bioinfo.ibp.ac.cn/biocircos/AVAILABILITY AND IMPLEMENTATIONBioCircos.js and its manual are freely available online at http://bioinfo.ibp.ac.cn/biocircos/rschen@ibp.ac.cnCONTACTrschen@ibp.ac.cnSupplementary data are available at Bioinformatics online.SUPPLEMENTARY INFORMATIONSupplementary data are available at Bioinformatics online. |
| Author | Yue, Haiyan Zhang, Peng Chen, Runsheng Luo, Jianjun He, Shunmin Fan, Zhen Cui, Ya Chen, Xiaowei Luo, Huaxia |
| Author_xml | – sequence: 1 givenname: Ya surname: Cui fullname: Cui, Ya organization: Key Laboratory of RNA Biology, Beijing Key Laboratory of Noncoding RNA, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China, University of Chinese Academy of Sciences, Beijing 100049, China – sequence: 2 givenname: Xiaowei surname: Chen fullname: Chen, Xiaowei organization: Key Laboratory of RNA Biology, Beijing Key Laboratory of Noncoding RNA, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China, Core Facility for Protein Research, Institute of Biophysics – sequence: 3 givenname: Huaxia surname: Luo fullname: Luo, Huaxia organization: Key Laboratory of RNA Biology, Beijing Key Laboratory of Noncoding RNA, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China – sequence: 4 givenname: Zhen surname: Fan fullname: Fan, Zhen organization: Key Laboratory of RNA Biology, Beijing Key Laboratory of Noncoding RNA, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China, Core Facility for Protein Research, Institute of Biophysics – sequence: 5 givenname: Jianjun surname: Luo fullname: Luo, Jianjun organization: Key Laboratory of RNA Biology, Beijing Key Laboratory of Noncoding RNA, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China – sequence: 6 givenname: Shunmin surname: He fullname: He, Shunmin organization: Key Laboratory of the Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China and – sequence: 7 givenname: Haiyan surname: Yue fullname: Yue, Haiyan organization: Key Laboratory of RNA Biology, Beijing Key Laboratory of Noncoding RNA, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China, University of Chinese Academy of Sciences, Beijing 100049, China – sequence: 8 givenname: Peng surname: Zhang fullname: Zhang, Peng organization: University of Chinese Academy of Sciences, Beijing 100049, China – sequence: 9 givenname: Runsheng surname: Chen fullname: Chen, Runsheng organization: Key Laboratory of RNA Biology, Beijing Key Laboratory of Noncoding RNA, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China, Research Network of Computational Biology, RNCB, Beijing 100101, China |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/26819473$$D View this record in MEDLINE/PubMed |
| BookMark | eNqNkFtLw0AQhRep2Iv-BGUffUm79836psUrBR_U5zBJNrJlk43ZtEV_vZEq-KYwMMPMx5zDmaJRExqL0Cklc0oMX-QuuKYKXQ29K-Ii73dE0AM0oVzpRKSUjn7NYzSNcU0IkUSqIzRmKqVGaD5B_sqFpeuKEOfreIGhwa7pbQdF77YW7y_4AbbwVHSu7bF3eQfdOx6U8WDBh1dXgMcl9IC3Lm7Au4_BUWjwUDubY2hbPyBfq3iMDivw0Z589xl6ubl-Xt4lq8fb--XlKlkLxvtElkxWLFeVKVMlgBtTVIIwrkFIQyrgYKkkQmmjGeOqLFOprOFVQaSotAY-Q-f7v20X3jY29lntYmG9h8aGTcxoyqQkxKT8HyhJFTNapX-j2nCppNZkQM--0U1e2zJrO1cPqWU_ufNP3P6Kxg |
| ContentType | Journal Article |
| Copyright | The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com. |
| Copyright_xml | – notice: The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com. |
| DBID | CGR CUY CVF ECM EIF NPM 7X8 7QO 7TM 8FD FR3 P64 7SC JQ2 L7M L~C L~D |
| DOI | 10.1093/bioinformatics/btw041 |
| DatabaseName | Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed MEDLINE - Academic Biotechnology Research Abstracts Nucleic Acids Abstracts Technology Research Database Engineering Research Database Biotechnology and BioEngineering Abstracts Computer and Information Systems Abstracts ProQuest Computer Science Collection Advanced Technologies Database with Aerospace Computer and Information Systems Abstracts Academic Computer and Information Systems Abstracts Professional |
| DatabaseTitle | MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) MEDLINE - Academic Engineering Research Database Biotechnology Research Abstracts Technology Research Database Nucleic Acids Abstracts Biotechnology and BioEngineering Abstracts Computer and Information Systems Abstracts Computer and Information Systems Abstracts – Academic Advanced Technologies Database with Aerospace ProQuest Computer Science Collection Computer and Information Systems Abstracts Professional |
| DatabaseTitleList | Computer and Information Systems Abstracts MEDLINE MEDLINE - Academic Engineering Research Database |
| Database_xml | – sequence: 1 dbid: NPM name: PubMed url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: 7X8 name: MEDLINE - Academic url: https://search.proquest.com/medline sourceTypes: Aggregation Database |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Biology |
| EISSN | 1367-4811 1460-2059 |
| EndPage | 1742 |
| ExternalDocumentID | 26819473 |
| Genre | Research Support, Non-U.S. Gov't Journal Article |
| GroupedDBID | --- -E4 -~X .2P .DC .I3 0R~ 1TH 23N 2WC 4.4 48X 53G 5GY 5WA 70D AAIJN AAIMJ AAJKP AAJQQ AAKPC AAMDB AAMVS AAOGV AAPQZ AAPXW AAUQX AAVAP AAVLN ABEJV ABEUO ABGNP ABIXL ABNKS ABPTD ABQLI ABWST ABXVV ABZBJ ACGFS ACIWK ACPRK ACUFI ACYTK ADBBV ADEYI ADEZT ADFTL ADGKP ADGZP ADHKW ADHZD ADMLS ADOCK ADPDF ADRDM ADRIX ADRTK ADVEK ADYVW ADZTZ ADZXQ AECKG AEGPL AEJOX AEKKA AEKSI AELWJ AEMDU AENEX AENZO AEPUE AETBJ AEWNT AFFZL AFGWE AFIYH AFOFC AFRAH AFXEN AGINJ AGKEF AGQXC AGSYK AHMBA AHXPO AIJHB AJEEA AJEUX AKHUL AKWXX ALMA_UNASSIGNED_HOLDINGS ALTZX ALUQC AMNDL APIBT APWMN ARIXL ASPBG AVWKF AXUDD AYOIW AZVOD BAWUL BAYMD BCRHZ BHONS BQDIO BQUQU BSWAC BTQHN C45 CDBKE CGR CS3 CUY CVF CZ4 DAKXR DIK DILTD DU5 D~K EBD EBS ECM EE~ EIF EJD EMOBN F5P F9B FEDTE FHSFR FLIZI FLUFQ FOEOM FQBLK GAUVT GJXCC GROUPED_DOAJ GX1 H13 H5~ HAR HW0 HZ~ IOX J21 JXSIZ KAQDR KOP KQ8 KSI KSN M-Z M49 MK~ ML0 N9A NGC NLBLG NMDNZ NOMLY NPM NU- NVLIB O9- OAWHX ODMLO OJQWA OK1 OVD OVEED P2P PAFKI PEELM PQQKQ Q1. Q5Y R44 RD5 RNS ROL ROX RPM RUSNO RW1 RXO SV3 TEORI TJP TLC TOX TR2 W8F WOQ X7H YAYTL YKOAZ YXANX ZKX ~91 ~KM 7X8 ABPQP ACUXJ 7QO 7TM 8FD ABJNI FR3 P64 ROZ TN5 WH7 7SC JQ2 L7M L~C L~D |
| ID | FETCH-LOGICAL-j423t-5d25f2b6f9d864a399cf40237a4590fa3ae150467972236dd856e93fc054f77a3 |
| ISICitedReferencesCount | 101 |
| ISICitedReferencesURI | http://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=Summon&SrcAuth=ProQuest&DestLinkType=CitingArticles&DestApp=WOS_CPL&KeyUT=000377428700018&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D |
| ISSN | 1367-4811 1367-4803 |
| IngestDate | Fri Sep 05 10:42:33 EDT 2025 Tue Oct 07 09:20:26 EDT 2025 Wed Oct 01 13:49:11 EDT 2025 Wed Feb 19 02:43:28 EST 2025 |
| IsDoiOpenAccess | false |
| IsOpenAccess | true |
| IsPeerReviewed | true |
| IsScholarly | true |
| Issue | 11 |
| Language | English |
| License | The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com. |
| LinkModel | OpenURL |
| MergedId | FETCHMERGED-LOGICAL-j423t-5d25f2b6f9d864a399cf40237a4590fa3ae150467972236dd856e93fc054f77a3 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
| OpenAccessLink | https://academic.oup.com/bioinformatics/article-pdf/32/11/1740/22693221/btw041.pdf |
| PMID | 26819473 |
| PQID | 1793565770 |
| PQPubID | 23479 |
| PageCount | 3 |
| ParticipantIDs | proquest_miscellaneous_1825500983 proquest_miscellaneous_1808629768 proquest_miscellaneous_1793565770 pubmed_primary_26819473 |
| PublicationCentury | 2000 |
| PublicationDate | 2016-06-01 |
| PublicationDateYYYYMMDD | 2016-06-01 |
| PublicationDate_xml | – month: 06 year: 2016 text: 2016-06-01 day: 01 |
| PublicationDecade | 2010 |
| PublicationPlace | England |
| PublicationPlace_xml | – name: England |
| PublicationTitle | Bioinformatics |
| PublicationTitleAlternate | Bioinformatics |
| PublicationYear | 2016 |
| SSID | ssj0005056 ssj0051444 |
| Score | 2.5226269 |
| Snippet | We here present BioCircos.js, an interactive and lightweight JavaScript library especially for biological data interactive visualization. BioCircos.js... |
| SourceID | proquest pubmed |
| SourceType | Aggregation Database Index Database |
| StartPage | 1740 |
| SubjectTerms | Bioinformatics Computer Graphics Genetics Genomics Interactive Java (programming language) Libraries Manuals Online Software Visualization |
| Title | BioCircos.js: an interactive Circos JavaScript library for biological data visualization on web applications |
| URI | https://www.ncbi.nlm.nih.gov/pubmed/26819473 https://www.proquest.com/docview/1793565770 https://www.proquest.com/docview/1808629768 https://www.proquest.com/docview/1825500983 |
| Volume | 32 |
| WOSCitedRecordID | wos000377428700018&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| journalDatabaseRights | – providerCode: PRVASL databaseName: Oxford Journals Open Access Collection customDbUrl: eissn: 1367-4811 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0005056 issn: 1367-4811 databaseCode: TOX dateStart: 19850101 isFulltext: true titleUrlDefault: https://academic.oup.com/journals/ providerName: Oxford University Press – providerCode: PRVASL databaseName: Oxford Journals Open Access Collection customDbUrl: eissn: 1367-4811 dateEnd: 20220930 omitProxy: false ssIdentifier: ssj0005056 issn: 1367-4811 databaseCode: TOX dateStart: 19850101 isFulltext: true titleUrlDefault: https://academic.oup.com/journals/ providerName: Oxford University Press |
| link | http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV1Lb9NAEF6lBSQuVXm3lGqRuFluEz93ubURVcWhIBEkwyWatdeqq2JHSewG_gX_mNmHYwfRCg5IkRXtruwk82VeO_MtIW9GaRh4kAWuYFK4AfjShRyEq6hYhAA0iFzowybiiwuWJPzjYPCz7YVpruOyZKsVn_1XUeMYClu1zv6DuNc3xQF8j0LHK4odr38l-NOiGhfztFocXelyNyg1J4TuhmqkY-ac99DAJ60xHJvIMYWbxVoZqtpRpykWquvyh3UsS0e1NvY3vTc2hYvK8rBq7mdFZLpqa-ftYSG9xMO41oUEX7pSIdsokhRQ3chiXSpU62zueQ2rYr32zORtv17aTjabtxhFXX3VkTS61leU68zqWquMu2Rn3TakWNWKodPwjzrf8GGJja-oBpY3Q8Op1RP67JuWuhehIxSYM1R-o9tup7bIPS8OudL1kw9JVzWEDmPbCMb9482nHptnKoJpe5fb4xbtv0x2yY4NPOiJAcwjMpDlY_LAHEX6_Qm57sPmLYWS9kBDzQztQEMtaCh-KtqBhirQ0A3QUHwhaGgfNE_J57N3k_G5a0_icK_Q3V66YeaFuSeinGcswj8052keoLcXQxDyYQ4-SAws0ObyGN3NKMtYGEnu5ykGBHkcg_-MbJdVKV8Q6oEnI5EzDMyzQKQC43NAQ4P23w9hFIk98rr9xaao6dT2FZSyqhdTZUrUJn08vGMNUyE6utjsrjUYRiseXX-PPDcimc4Mtcu0ldv-rTMvycMOzQdkezmv5StyP22WxWJ-SLbihB1qyPwCv5SYRQ |
| linkProvider | Oxford University Press |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=BioCircos.js%3A+an+interactive+Circos+JavaScript+library+for+biological+data+visualization+on+web+applications&rft.jtitle=Bioinformatics+%28Oxford%2C+England%29&rft.au=Cui%2C+Ya&rft.au=Chen%2C+Xiaowei&rft.au=Luo%2C+Huaxia&rft.au=Fan%2C+Zhen&rft.date=2016-06-01&rft.eissn=1367-4811&rft.volume=32&rft.issue=11&rft.spage=1740&rft_id=info:doi/10.1093%2Fbioinformatics%2Fbtw041&rft_id=info%3Apmid%2F26819473&rft.externalDocID=26819473 |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1367-4811&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1367-4811&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1367-4811&client=summon |