Visualization challenges for a new cyber-pharmaceutical computing paradigm

Celera has encountered a number of visualization problems in the course of developing tools for bioinformatics research, applying them to our data generation efforts, and making that data available to our customers. This paper presents several examples from Celera's experience. In the area of g...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:IEEE Parallel and Large Data Visualization and Graphics Symposium 2001 S. 7 - 145
Hauptverfasser: Turner, R.J., Chaturvedi, K., Edwards, N.J., Fasulo, D., Halpern, A.L., Huson, D.H., Kohlbacher, O., Miller, J.R., Reinert, K., Remington, K.A., Schwartz, R., Walenz, B., Yooseph, S., Istrail, S.
Format: Tagungsbericht
Sprache:Englisch
Veröffentlicht: IEEE 2001
Schlagworte:
Bioinformatics
Data visualization
Genetics
Genomics
Humans
Mice
Organisms
Proteins
Proteomics
Sequences
ISBN:0780372239, 9780780372238
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
Abstract Celera has encountered a number of visualization problems in the course of developing tools for bioinformatics research, applying them to our data generation efforts, and making that data available to our customers. This paper presents several examples from Celera's experience. In the area of genomics, challenging visualization problems have come up in assembling genomes, studying variations between individuals, and comparing different genomes to one another. The emerging area of proteomics has created new visualization challenges in interpreting protein expression data, studying protein regulatory networks, and examining protein structure. These examples illustrate how the field of bioinformatics is posing new challenges concerning the communication of data that are often very different from those that have heretofore dominated scientific computing. Addressing the level of detail, the degree of complexity, and the interdisciplinary barriers that characterize bioinformatic problems can be expected to be a sizable but rewarding task for the field of scientific visualization.
AbstractList Celera has encountered a number of visualization problems in the course of developing tools for bioinformatics research, applying them to our data generation efforts, and making that data available to our customers. This paper presents several examples from Celera's experience. In the area of genomics, challenging visualization problems have come up in assembling genomes, studying variations between individuals, and comparing different genomes to one another. The emerging area of proteomics has created new visualization challenges in interpreting protein expression data, studying protein regulatory networks, and examining protein structure. These examples illustrate how the field of bioinformatics is posing new challenges concerning the communication of data that are often very different from those that have heretofore dominated scientific computing. Addressing the level of detail, the degree of complexity, and the interdisciplinary barriers that characterize bioinformatic problems can be expected to be a sizable but rewarding task for the field of scientific visualization.
Author Edwards, N.J.
Kohlbacher, O.
Fasulo, D.
Huson, D.H.
Chaturvedi, K.
Remington, K.A.
Schwartz, R.
Reinert, K.
Istrail, S.
Miller, J.R.
Halpern, A.L.
Walenz, B.
Turner, R.J.
Yooseph, S.
Author_xml – sequence: 1
  givenname: R.J.
  surname: Turner
  fullname: Turner, R.J.
  organization: Celera Genomics Corp., Rockville, MD, USA
– sequence: 2
  givenname: K.
  surname: Chaturvedi
  fullname: Chaturvedi, K.
– sequence: 3
  givenname: N.J.
  surname: Edwards
  fullname: Edwards, N.J.
– sequence: 4
  givenname: D.
  surname: Fasulo
  fullname: Fasulo, D.
– sequence: 5
  givenname: A.L.
  surname: Halpern
  fullname: Halpern, A.L.
– sequence: 6
  givenname: D.H.
  surname: Huson
  fullname: Huson, D.H.
– sequence: 7
  givenname: O.
  surname: Kohlbacher
  fullname: Kohlbacher, O.
– sequence: 8
  givenname: J.R.
  surname: Miller
  fullname: Miller, J.R.
– sequence: 9
  givenname: K.
  surname: Reinert
  fullname: Reinert, K.
– sequence: 10
  givenname: K.A.
  surname: Remington
  fullname: Remington, K.A.
– sequence: 11
  givenname: R.
  surname: Schwartz
  fullname: Schwartz, R.
– sequence: 12
  givenname: B.
  surname: Walenz
  fullname: Walenz, B.
– sequence: 13
  givenname: S.
  surname: Yooseph
  fullname: Yooseph, S.
– sequence: 14
  givenname: S.
  surname: Istrail
  fullname: Istrail, S.
BookMark eNotj11LwzAYRgMq6Obuxav8gdakafNxKUM3ZaDg2O14k77pIm1a0g6Zv97BfG7OuTrwzMh17CMS8sBZzjkzT5-71VdeMMZzI0th9BWZMaWZUEUhzC1ZjOM3O6-qtCzLO_K-C-MR2vALU-gjdQdoW4wNjtT3iQKN-EPdyWLKhgOkDhwep-Cgpa7vhrPGhg6QoA5Nd09uPLQjLv45J9vXl-1ynW0-Vm_L500WtJkyKSpeY6UFE8ZKbzlXXjHHFUON1joNyoq6EIyr2hisPAjNsWAcuZcepJiTx0s2IOJ-SKGDdNpfzoo_6xtNYQ
ContentType Conference Proceeding
DBID 6IE
6IL
CBEJK
RIE
RIL
DOI 10.1109/PVGS.2001.964398
DatabaseName IEEE Electronic Library (IEL) Conference Proceedings
IEEE Xplore POP ALL
IEEE Xplore All Conference Proceedings
IEEE Electronic Library (IEL)
IEEE Proceedings Order Plans (POP All) 1998-Present
DatabaseTitleList
Database_xml – sequence: 1
  dbid: RIE
  name: IEEE Electronic Library (IEL)
  url: https://ieeexplore.ieee.org/
  sourceTypes: Publisher
DeliveryMethod fulltext_linktorsrc
Discipline Computer Science
EndPage 145
ExternalDocumentID 964398
Genre orig-research
GroupedDBID 6IE
6IK
6IL
AAJGR
AAVQY
AAWTH
ACM
ALMA_UNASSIGNED_HOLDINGS
APO
BEFXN
BFFAM
BGNUA
BKEBE
BPEOZ
CBEJK
GUFHI
LHSKQ
OCL
RIB
RIC
RIE
RIL
ID FETCH-LOGICAL-i89t-6351de583039b6fb117f70c170e8ebbc8a7b3d23017d99e5fa381e201e1f6fa63
IEDL.DBID RIE
ISBN 0780372239
9780780372238
IngestDate Tue Aug 26 16:47:27 EDT 2025
IsPeerReviewed false
IsScholarly false
Language English
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-i89t-6351de583039b6fb117f70c170e8ebbc8a7b3d23017d99e5fa381e201e1f6fa63
PageCount 139
ParticipantIDs ieee_primary_964398
PublicationCentury 2000
PublicationDate 20010000
PublicationDateYYYYMMDD 2001-01-01
PublicationDate_xml – year: 2001
  text: 20010000
PublicationDecade 2000
PublicationTitle IEEE Parallel and Large Data Visualization and Graphics Symposium 2001
PublicationTitleAbbrev PVGS
PublicationYear 2001
Publisher IEEE
Publisher_xml – name: IEEE
SSID ssj0000558644
Score 1.3027503
Snippet Celera has encountered a number of visualization problems in the course of developing tools for bioinformatics research, applying them to our data generation...
SourceID ieee
SourceType Publisher
StartPage 7
SubjectTerms Bioinformatics
Data visualization
Genetics
Genomics
Humans
Mice
Organisms
Proteins
Proteomics
Sequences
Title Visualization challenges for a new cyber-pharmaceutical computing paradigm
URI https://ieeexplore.ieee.org/document/964398
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwlV1LSwMxEA62ePBUrRXf5OA1bdJ9JDmLVURKwVJ6K5tkVvdgW_oC_72T7G5V8CLsIbuEYUk2-30zyTdDyB1-FBCniWMiszmLlYmYMlazDOLERtI5GSrPTV7kcKimUz2q8mwHLQwAhMNn0PXNsJfvFnbrQ2U9nztKqwZpSClLqdY-nMKTRCG0B8dc8Ugi6ukqv059r-pdSq57o8njq3cORbe0-au2SoCWQetfL3VMOt8SPTrag88JOYB5m7TqGg20WrKn5HlSrL1uslRbUlvXTllTZKs0o8iqqf00sGLL95_RbWqDKbRNfXZwV7x9dMh48DC-f2JV_QRWKL1hSCWEg0QhSGmT5kYImUtuheSgwBirMmkihy6IkE5rSPIM0RuQEIDI0zxLozPSnC_mcE4oB4e_hrTftykuchcrjn1iRPo4MjFysAvS9gMzW5YZMmblmFz--fSKHJXnuPx1TZqb1RZuyKHdbYr16jbM6hfbLJ_h
linkProvider IEEE
linkToHtml http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwlV3PT8IwFG4UTfSEIsbf9uC1sLJubc9GREVCIiHcyNq-6Q4C4YeJ_71v3UBNvJjs0C3Ny9Ku-7732u89Qm7wowARR47xxKZMKBMyZaxmCYjIhtI56SvPDbuy11Ojke6Xeba9FgYA_OEzaORNv5fvpnaVh8qaee4orbbJTiREixdirU1AJYgiheDuXXMVhBJxT5cZdtb3ar1PGehmf3j_kruHvFFY_VVdxYNLu_qv1zog9W-RHu1v4OeQbMGkRqrrKg20XLRH5HGYLXLlZKG3pHZdPWVBka_ShCKvpvbTwJzN3n7Gt6n1ptA2zfODu-z1vU4G7bvBbYeVFRRYpvSSIZngDiKFMKVNnBrOZSoDy2UACoyxKpEmdOiEcOm0hihNEL8BKQHwNE6TODwmlcl0AieEBuDw5xC3WjbGZe6ECrCPQKwXoRHIwk5JLR-Y8azIkTEuxuTsz6fXZK8zeO6Ouw-9p3OyX5zqyq8LUlnOV3BJdu3HMlvMr_wMfwFfuaMo
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Abook&rft.genre=proceeding&rft.title=IEEE+Parallel+and+Large+Data+Visualization+and+Graphics+Symposium+2001&rft.atitle=Visualization+challenges+for+a+new+cyber-pharmaceutical+computing+paradigm&rft.au=Turner%2C+R.J.&rft.au=Chaturvedi%2C+K.&rft.au=Edwards%2C+N.J.&rft.au=Fasulo%2C+D.&rft.date=2001-01-01&rft.pub=IEEE&rft.isbn=9780780372238&rft.spage=7&rft.epage=145&rft_id=info:doi/10.1109%2FPVGS.2001.964398&rft.externalDocID=964398
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=9780780372238/lc.gif&client=summon&freeimage=true
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=9780780372238/mc.gif&client=summon&freeimage=true
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=9780780372238/sc.gif&client=summon&freeimage=true