Single Pass, BLAST-Like, Approximate String Matching on FPGAs

Approximate string matching is fundamental to bioinformatics, and has been the subject of numerous FPGA acceleration studies. We address issues with respect to FPGA implementations of both BLAST- and dynamic programming- (DP) based methods. Our primary contributions are two new algorithms for emulat...

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Bibliographic Details

Published in:	FCCM 2006 : 14th Annual IEEE Symposium on Field-Programmable Custom Computing Machines : proceedings : 24-26 April, 2006, Napa, California pp. 217 - 226
Main Authors:	Herbordt, J.C., Model, J., Yongfeng Gu, Sukhwani, B., VanCourt, T.
Format:	Conference Proceeding
Language:	English
Published:	IEEE 01.04.2006
Subjects:	Acceleration Bioinformatics Data mining DNA Field programmable gate arrays Genetic mutations Hardware Proteins Sequences
ISBN:	9780769526614, 0769526616
Online Access:	Get full text
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