A Practical Guide on Computational Tools and Databases for Transposable Elements in Plants
In the age of big data, obtaining precise information about the research topic of interesting is extremely important. Keeping this in mind, this chapter focuses on providing a practical knowledge guide about computational tools and databases of transposable elements (TE) in plants. For that, we orga...
Uloženo v:
| Vydáno v: | Methods in molecular biology (Clifton, N.J.) Ročník 2250; s. 31 |
|---|---|
| Hlavní autoři: | , , , , |
| Médium: | Journal Article |
| Jazyk: | angličtina |
| Vydáno: |
United States
2021
|
| Témata: | |
| ISSN: | 1940-6029, 1940-6029 |
| On-line přístup: | Zjistit podrobnosti o přístupu |
| Tagy: |
Přidat tag
Žádné tagy, Buďte první, kdo vytvoří štítek k tomuto záznamu!
|
| Abstract | In the age of big data, obtaining precise information about the research topic of interesting is extremely important. Keeping this in mind, this chapter focuses on providing a practical knowledge guide about computational tools and databases of transposable elements (TE) in plants. For that, we organize and present this text in three sections: (1) a discussion about tools and databases on this theme; (2) hands-on of how to use a few of them; (3) an exploratory data analysis on public TE data. Finally, we are going deep to present the main challenges and possible solutions to improve resources and tools. |
|---|---|
| AbstractList | In the age of big data, obtaining precise information about the research topic of interesting is extremely important. Keeping this in mind, this chapter focuses on providing a practical knowledge guide about computational tools and databases of transposable elements (TE) in plants. For that, we organize and present this text in three sections: (1) a discussion about tools and databases on this theme; (2) hands-on of how to use a few of them; (3) an exploratory data analysis on public TE data. Finally, we are going deep to present the main challenges and possible solutions to improve resources and tools. In the age of big data, obtaining precise information about the research topic of interesting is extremely important. Keeping this in mind, this chapter focuses on providing a practical knowledge guide about computational tools and databases of transposable elements (TE) in plants. For that, we organize and present this text in three sections: (1) a discussion about tools and databases on this theme; (2) hands-on of how to use a few of them; (3) an exploratory data analysis on public TE data. Finally, we are going deep to present the main challenges and possible solutions to improve resources and tools.In the age of big data, obtaining precise information about the research topic of interesting is extremely important. Keeping this in mind, this chapter focuses on providing a practical knowledge guide about computational tools and databases of transposable elements (TE) in plants. For that, we organize and present this text in three sections: (1) a discussion about tools and databases on this theme; (2) hands-on of how to use a few of them; (3) an exploratory data analysis on public TE data. Finally, we are going deep to present the main challenges and possible solutions to improve resources and tools. |
| Author | de Amorim, Tharcísio Soares da Rocha Vicente, Fábio Fernandes Paschoal, Alexandre Rossi Oliveira, Liliane Santana Pedro, Daniel Longhi Fernandes |
| Author_xml | – sequence: 1 givenname: Liliane Santana surname: Oliveira fullname: Oliveira, Liliane Santana email: liliane.sntn@gmail.com organization: Department of Parasitology, Institute of Biomedical Sciences, Universidade de São Paulo, São Paulo, SP, Brazil. liliane.sntn@gmail.com – sequence: 2 givenname: Tharcísio Soares surname: de Amorim fullname: de Amorim, Tharcísio Soares organization: Bioinformatics Graduation Program (PPGBIOINFO), Department of Computer Science, Federal University of Technology-Paraná (UTFPR), Cornélio Procópio, PR, Brazil – sequence: 3 givenname: Daniel Longhi Fernandes surname: Pedro fullname: Pedro, Daniel Longhi Fernandes organization: Bioinformatics Graduation Program (PPGBIOINFO), Department of Computer Science, Federal University of Technology-Paraná (UTFPR), Cornélio Procópio, PR, Brazil – sequence: 4 givenname: Fábio Fernandes surname: da Rocha Vicente fullname: da Rocha Vicente, Fábio Fernandes organization: Bioinformatics Graduation Program (PPGBIOINFO), Department of Computer Science, Federal University of Technology-Paraná (UTFPR), Cornélio Procópio, PR, Brazil – sequence: 5 givenname: Alexandre Rossi surname: Paschoal fullname: Paschoal, Alexandre Rossi email: paschoal@utfpr.edu.br organization: Bioinformatics Graduation Program (PPGBIOINFO), Department of Computer Science, Federal University of Technology-Paraná (UTFPR), Cornélio Procópio, PR, Brazil. paschoal@utfpr.edu.br |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/33900590$$D View this record in MEDLINE/PubMed |
| BookMark | eNpNkE1LxDAYhIOsuB_6CwTJ0Uv0zUeb5ris6yosuIf14qWk6VuptElt2oP_fguu4GmG4WEYZklmPngk5JbDAwfQj0ZnjDPQPGWcS8UglxdkwY0CloIws39-TpYxfgEoLYW6InMpDUBiYEE-1vTQWzfUzjZ0N9Yl0uDpJrTdONihDn6KjyE0kVpf0ic72MJGjLQKPT321scuRFs0SLcNtuiHSGtPD42d3DW5rGwT8easK_L-vD1uXtj-bfe6We_Zp4BEslSoSpUFgtaFyQRq7axRwqGqnHZGWGcgBStkqYRBnhZclyrB1CS8KmTlxIrc__Z2ffgeMQ55W0eHzTQCwxhzkfBMS8NlNqF3Z3QsWizzrq9b2__kf3-IE9ObZAg |
| ContentType | Journal Article |
| DBID | NPM 7X8 |
| DOI | 10.1007/978-1-0716-1134-0_3 |
| DatabaseName | PubMed MEDLINE - Academic |
| DatabaseTitle | PubMed MEDLINE - Academic |
| DatabaseTitleList | PubMed MEDLINE - Academic |
| Database_xml | – sequence: 1 dbid: NPM name: PubMed url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: 7X8 name: MEDLINE - Academic url: https://search.proquest.com/medline sourceTypes: Aggregation Database |
| DeliveryMethod | no_fulltext_linktorsrc |
| Discipline | Biology |
| EISSN | 1940-6029 |
| ExternalDocumentID | 33900590 |
| Genre | Journal Article |
| GroupedDBID | --- 29M 53G ACGFS ALMA_UNASSIGNED_HOLDINGS F5P NPM P2P RSU SPO UDS WH7 ZGI 7X8 |
| ID | FETCH-LOGICAL-g2053-624f4dbe077b982e77ca942ce4fc7c92ac9060a23d429e16b17d45e6951fb3fc2 |
| IEDL.DBID | 7X8 |
| ISSN | 1940-6029 |
| IngestDate | Fri Jul 11 08:30:59 EDT 2025 Thu Jan 02 22:55:57 EST 2025 |
| IsPeerReviewed | false |
| IsScholarly | true |
| Keywords | Data analysis Databases Hands-on Tools Resources Bioinformatics Mobile |
| Language | English |
| LinkModel | DirectLink |
| MergedId | FETCHMERGED-LOGICAL-g2053-624f4dbe077b982e77ca942ce4fc7c92ac9060a23d429e16b17d45e6951fb3fc2 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
| PMID | 33900590 |
| PQID | 2518739138 |
| PQPubID | 23479 |
| ParticipantIDs | proquest_miscellaneous_2518739138 pubmed_primary_33900590 |
| PublicationCentury | 2000 |
| PublicationDate | 2021-00-00 |
| PublicationDateYYYYMMDD | 2021-01-01 |
| PublicationDate_xml | – year: 2021 text: 2021-00-00 |
| PublicationDecade | 2020 |
| PublicationPlace | United States |
| PublicationPlace_xml | – name: United States |
| PublicationTitle | Methods in molecular biology (Clifton, N.J.) |
| PublicationTitleAlternate | Methods Mol Biol |
| PublicationYear | 2021 |
| SSID | ssj0047324 |
| Score | 2.3097377 |
| Snippet | In the age of big data, obtaining precise information about the research topic of interesting is extremely important. Keeping this in mind, this chapter... |
| SourceID | proquest pubmed |
| SourceType | Aggregation Database Index Database |
| StartPage | 31 |
| Title | A Practical Guide on Computational Tools and Databases for Transposable Elements in Plants |
| URI | https://www.ncbi.nlm.nih.gov/pubmed/33900590 https://www.proquest.com/docview/2518739138 |
| Volume | 2250 |
| hasFullText | |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| link | http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwpV1JSwMxFA5qFby4L3UjgtfgTBKTyUmKtnqx9KBQvAyZLFKQmWpawX9vMon1JAhe5jZDeJO89-Ut3wfAhfUXLquYRoWsMkSN0kga5Z2hppVVlFCZxCb4cFiMx2KUEm4utVV--8TWUetGhRz5pY_DBSciJ8X19A0F1ahQXU0SGsugQzyUCS1dfLyoIlBOoqitCC3uGRYL1qFILJuH6R2G8pxQlJXkd4zZxprB5n9XuQU2EsqEvbgttsGSqXfAWtSd_NwFzz0YeYr8D4J384k2sKlhFHhIyUH42DSvDspaw1s5kyHYOegBLkxs6C6MXMF-bD53cFLDIH80c3vgadB_vLlHSWQBvWB_ABHD1FJdmYzzShTYcK6koFgZahVXAkslMpZJTLSPXCZnVc41vTLMIzNbEavwPlipm9ocAqhlXmTMWGW0x4HU3-R44M7hipEqfLULzr-NVvpNHCoTsjbN3JU_ZuuCg2j5chrZNkpCRDshe_SHt4_BOg49J22K5AR0rD_C5hSsqo_ZxL2ftbvDP4ejhy9HC8O3 |
| linkProvider | ProQuest |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=A+Practical+Guide+on+Computational+Tools+and+Databases+for+Transposable+Elements+in+Plants&rft.jtitle=Methods+in+molecular+biology+%28Clifton%2C+N.J.%29&rft.au=Oliveira%2C+Liliane+Santana&rft.au=de+Amorim%2C+Tharc%C3%ADsio+Soares&rft.au=Pedro%2C+Daniel+Longhi+Fernandes&rft.au=da+Rocha+Vicente%2C+F%C3%A1bio+Fernandes&rft.date=2021-01-01&rft.issn=1940-6029&rft.eissn=1940-6029&rft.volume=2250&rft.spage=31&rft_id=info:doi/10.1007%2F978-1-0716-1134-0_3&rft.externalDBID=NO_FULL_TEXT |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1940-6029&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1940-6029&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1940-6029&client=summon |