FASIMU: flexible software for flux-balance computation series in large metabolic networks

Background Flux-balance analysis based on linear optimization is widely used to compute metabolic fluxes in large metabolic networks and gains increasingly importance in network curation and structural analysis. Thus, a computational tool flexible enough to realize a wide variety of FBA algorithms a...

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Bibliographic Details
Published in:	BMC bioinformatics Vol. 12; no. 1; p. 28
Main Authors:	Hoppe, Andreas, Hoffmann, Sabrina, Gerasch, Andreas, Gille, Christoph, Holzhütter, Hermann-Georg
Format:	Journal Article
Language:	English
Published:	London BioMed Central 22.01.2011 BioMed Central Ltd Springer Nature B.V BMC
Subjects:	Algorithms Batch processing Bioinformatics Biomedical and Life Sciences Cell metabolism Computational Biology - methods Computational Biology/Bioinformatics Computer Appl. in Life Sciences Computer applications Computer programs Computer science Computer Simulation Data processing Enzymes Expectation-maximization algorithm Fitness Fluctuations Freeware Life Sciences Metabolic engineering metabolic networks Metabolic Networks and Pathways Metabolites Microarrays Models, Biological Networks analysis Objectives Operating systems Programming languages Science Simulation Software Structural analysis Studies Thermodynamics User interface Description File Commercial Solver Flux Distribution Flux Variability Analysis Open Source Program
ISSN:	1471-2105, 1471-2105
Online Access:	Get full text
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