CheckV assesses the quality and completeness of metagenome-assembled viral genomes

Millions of new viral sequences have been identified from metagenomes, but the quality and completeness of these sequences vary considerably. Here we present CheckV, an automated pipeline for identifying closed viral genomes, estimating the completeness of genome fragments and removing flanking host...

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Veröffentlicht in:	Nature biotechnology Jg. 39; H. 5; S. 578 - 585
Hauptverfasser:	Nayfach, Stephen, Camargo, Antonio Pedro, Schulz, Frederik, Eloe-Fadrosh, Emiley, Roux, Simon, Kyrpides, Nikos C.
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	New York Nature Publishing Group US 01.05.2021 Nature Publishing Group Springer Nature
Schlagworte:	631/114/2785 631/326/596/2142 Agriculture BASIC BIOLOGICAL SCIENCES Bioinformatics Biomedical and Life Sciences Biomedical Engineering/Biotechnology Biomedicine Biotechnology Completeness Computer programs Contamination Electronic data processing Fragments Genetic research Genomes Life Sciences Methods Proviruses Quality assessment Science Technology application Viral genetics United States
ISSN:	1087-0156, 1546-1696, 1546-1696
Online-Zugang:	Volltext
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