LabelProp: A semi-automatic segmentation tool for 3D medical images
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| Published in: | Journal of open source software Vol. 10; no. 109; p. 6284 |
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| Main Authors: | , , , , , , , , |
| Format: | Journal Article |
| Language: | English |
| Published: |
30.05.2025
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| ISSN: | 2475-9066, 2475-9066 |
| Online Access: | Get full text |
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| Author | Salem, Douraied Ben He, Xinyan Decaux, Nathan Brochard, Sylvain Ropars, Juliette Sheehan, Frances T. Rousseau, François Conze, Pierre-Henri Pons, Christelle |
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| Author_xml | – sequence: 1 givenname: Nathan orcidid: 0000-0002-6911-6373 surname: Decaux fullname: Decaux, Nathan – sequence: 2 givenname: Pierre-Henri orcidid: 0000-0003-2214-3654 surname: Conze fullname: Conze, Pierre-Henri – sequence: 3 givenname: Juliette orcidid: 0000-0001-7467-759X surname: Ropars fullname: Ropars, Juliette – sequence: 4 givenname: Xinyan surname: He fullname: He, Xinyan – sequence: 5 givenname: Frances T. surname: Sheehan fullname: Sheehan, Frances T. – sequence: 6 givenname: Christelle orcidid: 0000-0003-3924-6035 surname: Pons fullname: Pons, Christelle – sequence: 7 givenname: Douraied Ben orcidid: 0000-0001-5532-2208 surname: Salem fullname: Salem, Douraied Ben – sequence: 8 givenname: Sylvain orcidid: 0000-0002-4950-1696 surname: Brochard fullname: Brochard, Sylvain – sequence: 9 givenname: François orcidid: 0000-0001-9837-7487 surname: Rousseau fullname: Rousseau, François |
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| Cites_doi | 10.48550/arXiv.2006.12890 10.1109/TMI.2019.2897538 10.1007/978-3-319-24574-4_28 10.1109/TBME.2008.921158 10.1109/EMBC.2017.8036826 10.1109/TMI.2021.3058303 10.1016/j.artmed.2020.101998 10.48550/arXiv.2006.14613 10.1016/j.compmedimag.2020.101733 10.1016/j.patcog.2023.109529 10.48550/arXiv.1903.08205 |
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| PublicationDate | 2025-05-30 |
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| References | Albu (albu2008morphology) 2008; 55 Jabri (jabri_space-time_2020) 2020 Sakinis (sakinis2019interactive) 2019 Conze (conze2020healthy) 2020; 83 Ogier (ogier2017individual) 2017 Ronneberger (ronneberger2015u) 2015 Decaux (decaux_semi-automatic_2023) 2023; 140 Balakrishnan (balakrishnan2019voxelmorph) 2019; 38 Vădineanu (vadineanu_analysis_2022) 2022 Lee (lee_scribble2label_2020) 2020 Chanti (chanti_ifss-net_2021) 2021; 40 Zhang (zhang2021interactive) 2021; 111 |
| References_xml | – year: 2020 ident: lee_scribble2label_2020 article-title: Scribble2Label: Scribble-supervised cell segmentation via self-generating pseudo-labels with consistency publication-title: arXiv:2006.12890 [cs] doi: 10.48550/arXiv.2006.12890 – volume: 38 issue: 8 year: 2019 ident: balakrishnan2019voxelmorph article-title: VoxelMorph: A learning framework for deformable medical image registration publication-title: IEEE Transactions on Medical Imaging doi: 10.1109/TMI.2019.2897538 – year: 2015 ident: ronneberger2015u article-title: U-net: Convolutional networks for biomedical image segmentation publication-title: Medical image computing and computer-assisted intervention–MICCAI 2015: 18th international conference, munich, germany, october 5-9, 2015, proceedings, part III 18 doi: 10.1007/978-3-319-24574-4_28 – year: 2022 ident: vadineanu_analysis_2022 article-title: An analysis of the impact of annotation errors on the accuracy of deep learning for cell segmentation publication-title: Proceedings of the 5th international conference on medical imaging with deep learning – volume: 55 issue: 8 year: 2008 ident: albu2008morphology article-title: A morphology-based approach for interslice interpolation of anatomical slices from volumetric images publication-title: IEEE Transactions on Biomedical Engineering doi: 10.1109/TBME.2008.921158 – year: 2017 ident: ogier2017individual article-title: Individual muscle segmentation in MR images: A 3D propagation through 2D non-linear registration approaches publication-title: International conference of the IEEE engineering in medicine and biology society doi: 10.1109/EMBC.2017.8036826 – volume: 40 issn: 0278-0062 issue: 10 year: 2021 ident: chanti_ifss-net_2021 article-title: IFSS-net: Interactive few-shot siamese network for faster muscle segmentation and propagation in volumetric ultrasound publication-title: IEEE Transactions on Medical Imaging doi: 10.1109/TMI.2021.3058303 – volume: 111 year: 2021 ident: zhang2021interactive article-title: Interactive medical image segmentation via a point-based interaction publication-title: Artificial Intelligence in Medicine doi: 10.1016/j.artmed.2020.101998 – year: 2020 ident: jabri_space-time_2020 article-title: Space-time correspondence as a contrastive random walk doi: 10.48550/arXiv.2006.14613 – volume: 83 year: 2020 ident: conze2020healthy article-title: Healthy versus pathological learning transferability in shoulder muscle MRI segmentation using deep convolutional encoder-decoders publication-title: Computerized Medical Imaging and Graphics doi: 10.1016/j.compmedimag.2020.101733 – volume: 140 issn: 0031-3203 year: 2023 ident: decaux_semi-automatic_2023 article-title: Semi-automatic muscle segmentation in MR images using deep registration-based label propagation publication-title: Pattern Recognition doi: 10.1016/j.patcog.2023.109529 – year: 2019 ident: sakinis2019interactive article-title: Interactive segmentation of medical images through fully convolutional neural networks publication-title: arXiv preprint arXiv:1903.08205 doi: 10.48550/arXiv.1903.08205 |
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| Title | LabelProp: A semi-automatic segmentation tool for 3D medical images |
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