The Function Biomedical Informatics Research Network Data Repository

The Function Biomedical Informatics Research Network (FBIRN) developed methods and tools for conducting multi-scanner functional magnetic resonance imaging (fMRI) studies. Method and tool development were based on two major goals: 1) to assess the major sources of variation in fMRI studies conducted...

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Veröffentlicht in:	NeuroImage (Orlando, Fla.) Jg. 124; H. Pt B; S. 1074 - 1079
Hauptverfasser:	Keator, David B., van Erp, Theo G.M., Turner, Jessica A., Glover, Gary H., Mueller, Bryon A., Liu, Thomas T., Voyvodic, James T., Rasmussen, Jerod, Calhoun, Vince D., Lee, Hyo Jong, Toga, Arthur W., McEwen, Sarah, Ford, Judith M., Mathalon, Daniel H., Diaz, Michele, O'Leary, Daniel S., Jeremy Bockholt, H., Gadde, Syam, Preda, Adrian, Wible, Cynthia G., Stern, Hal S., Belger, Aysenil, McCarthy, Gregory, Ozyurt, Burak, Potkin, Steven G.
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	United States Elsevier Inc 01.01.2016 Elsevier Limited
Schlagworte:	Access control Adolescent Adult Aged Bioinformatics Biomedical Research Brain mapping Data collection Databases, Factual Datasets Female Functional magnetic resonance imaging Healthy Volunteers Humans Informatics Information Dissemination Magnetic Resonance Imaging Male Medical imaging Medical Informatics Mental disorders Middle Aged Neuroimaging Physiology Psychotic Disorders - pathology Public access Reference Values Scanners Schizoaffective disorder Schizophrenia Schizophrenia - pathology Young Adult
ISSN:	1053-8119, 1095-9572, 1095-9572
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Abstract	The Function Biomedical Informatics Research Network (FBIRN) developed methods and tools for conducting multi-scanner functional magnetic resonance imaging (fMRI) studies. Method and tool development were based on two major goals: 1) to assess the major sources of variation in fMRI studies conducted across scanners, including instrumentation, acquisition protocols, challenge tasks, and analysis methods, and 2) to provide a distributed network infrastructure and an associated federated database to host and query large, multi-site, fMRI and clinical data sets. In the process of achieving these goals the FBIRN test bed generated several multi-scanner brain imaging data sets to be shared with the wider scientific community via the BIRN Data Repository (BDR). The FBIRN Phase 1 data set consists of a traveling subject study of 5 healthy subjects, each scanned on 10 different 1.5 to 4T scanners. The FBIRN Phase 2 and Phase 3 data sets consist of subjects with schizophrenia or schizoaffective disorder along with healthy comparison subjects scanned at multiple sites. In this paper, we provide concise descriptions of FBIRN's multi-scanner brain imaging data sets and details about the BIRN Data Repository instance of the Human Imaging Database (HID) used to publicly share the data. •This manuscript presents Function Biomedical Informatics Research Network data.•FBIRN data are shared via the BIRN Data Repository and SchizConnect.•FBIRN shares data from individuals with schizophrenia and healthy controls.•FBIRN shares structural and functional brain imaging, clinical, and cognitive data.
AbstractList	The Function Biomedical Informatics Research Network (FBIRN) developed methods and tools for conducting multi-scanner functional magnetic resonance imaging (fMRI) studies. Method and tool development were based on two major goals: 1) to assess the major sources of variation in fMRI studies conducted across scanners, including instrumentation, acquisition protocols, challenge tasks, and analysis methods, and 2) to provide a distributed network infrastructure and an associated federated database to host and query large, multi-site, fMRI and clinical data sets. In the process of achieving these goals the FBIRN test bed generated several multi-scanner brain imaging data sets to be shared with the wider scientific community via the BIRN Data Repository (BDR). The FBIRN Phase 1 data set consists of a traveling subject study of 5 healthy subjects, each scanned on 10 different 1.5 to 4T scanners. The FBIRN Phase 2 and Phase 3 data sets consist of subjects with schizophrenia or schizoaffective disorder along with healthy comparison subjects scanned at multiple sites. In this paper, we provide concise descriptions of FBIRN's multi-scanner brain imaging data sets and details about the BIRN Data Repository instance of the Human Imaging Database (HID) used to publicly share the data. The Function Biomedical Informatics Research Network (FBIRN) developed methods and tools for conducting multi-scanner functional magnetic resonance imaging (fMRI) studies. Method and tool development were based on two major goals: 1) to assess the major sources of variation in fMRI studies conducted across scanners, including instrumentation, acquisition protocols, challenge tasks, and analysis methods, and 2) to provide a distributed network infrastructure and an associated federated database to host and query large, multi-site, fMRI and clinical data sets. In the process of achieving these goals the FBIRN test bed generated several multi-scanner brain imaging data sets to be shared with the wider scientific community via the BIRN Data Repository (BDR). The FBIRN Phase 1 data set consists of a traveling subject study of 5 healthy subjects, each scanned on 10 different 1.5 to 4T scanners. The FBIRN Phase 2 and Phase 3 data sets consist of subjects with schizophrenia or schizoaffective disorder along with healthy comparison subjects scanned at multiple sites. In this paper, we provide concise descriptions of FBIRN's multi-scanner brain imaging data sets and details about the BIRN Data Repository instance of the Human Imaging Database (HID) used to publicly share the data. •This manuscript presents Function Biomedical Informatics Research Network data.•FBIRN data are shared via the BIRN Data Repository and SchizConnect.•FBIRN shares data from individuals with schizophrenia and healthy controls.•FBIRN shares structural and functional brain imaging, clinical, and cognitive data. The Function Biomedical Informatics Research Network (FBIRN) developed methods and tools for conducting multi-scanner functional magnetic resonance imaging (fMRI) studies. Method and tool development were based on two major goals: 1) to assess the major sources of variation in fMRI studies conducted across scanners, including instrumentation, acquisition protocols, challenge tasks, and analysis methods, and 2) to provide a distributed network infrastructure and an associated federated database to host and query large, multi-site, fMRI and clinical datasets. In the process of achieving these goals the FBIRN test bed generated several multi-scanner brain imaging data sets to be shared with the wider scientific community via the BIRN Data Repository (BDR). The FBIRN Phase 1 dataset consists of a traveling subject study of 5 healthy subjects, each scanned on 10 different 1.5 to 4 Tesla scanners. The FBIRN Phase 2 and Phase 3 datasets consist of subjects with schizophrenia or schizoaffective disorder along with healthy comparison subjects scanned at multiple sites. In this paper, we provide concise descriptions of FBIRN’s multi-scanner brain imaging data sets and details about the BIRN Data Repository instance of the Human Imaging Database (HID) used to publicly share the data. The Function Biomedical Informatics Research Network (FBIRN) developed methods and tools for conducting multi-scanner functional magnetic resonance imaging (fMRI) studies. Method and tool development were based on two major goals: 1) to assess the major sources of variation in fMRI studies conducted across scanners, including instrumentation, acquisition protocols, challenge tasks, and analysis methods, and 2) to provide a distributed network infrastructure and an associated federated database to host and query large, multi-site, fMRI and clinical data sets. In the process of achieving these goals the FBIRN test bed generated several multi-scanner brain imaging data sets to be shared with the wider scientific community via the BIRN Data Repository (BDR). The FBIRN Phase 1 data set consists of a traveling subject study of 5 healthy subjects, each scanned on 10 different 1.5 to 4 T scanners. The FBIRN Phase 2 and Phase 3 data sets consist of subjects with schizophrenia or schizoaffective disorder along with healthy comparison subjects scanned at multiple sites. In this paper, we provide concise descriptions of FBIRN's multi-scanner brain imaging data sets and details about the BIRN Data Repository instance of the Human Imaging Database (HID) used to publicly share the data. The Function Biomedical Informatics Research Network (FBIRN) developed methods and tools for conducting multi-scanner functional magnetic resonance imaging (fMRI) studies. Method and tool development were based on two major goals: 1) to assess the major sources of variation in fMRI studies conducted across scanners, including instrumentation, acquisition protocols, challenge tasks, and analysis methods, and 2) to provide a distributed network infrastructure and an associated federated database to host and query large, multi-site, fMRI and clinical data sets. In the process of achieving these goals the FBIRN test bed generated several multi-scanner brain imaging data sets to be shared with the wider scientific community via the BIRN Data Repository (BDR). The FBIRN Phase 1 data set consists of a traveling subject study of 5 healthy subjects, each scanned on 10 different 1.5 to 4 T scanners. The FBIRN Phase 2 and Phase 3 data sets consist of subjects with schizophrenia or schizoaffective disorder along with healthy comparison subjects scanned at multiple sites. In this paper, we provide concise descriptions of FBIRN's multi-scanner brain imaging data sets and details about the BIRN Data Repository instance of the Human Imaging Database (HID) used to publicly share the data.The Function Biomedical Informatics Research Network (FBIRN) developed methods and tools for conducting multi-scanner functional magnetic resonance imaging (fMRI) studies. Method and tool development were based on two major goals: 1) to assess the major sources of variation in fMRI studies conducted across scanners, including instrumentation, acquisition protocols, challenge tasks, and analysis methods, and 2) to provide a distributed network infrastructure and an associated federated database to host and query large, multi-site, fMRI and clinical data sets. In the process of achieving these goals the FBIRN test bed generated several multi-scanner brain imaging data sets to be shared with the wider scientific community via the BIRN Data Repository (BDR). The FBIRN Phase 1 data set consists of a traveling subject study of 5 healthy subjects, each scanned on 10 different 1.5 to 4 T scanners. The FBIRN Phase 2 and Phase 3 data sets consist of subjects with schizophrenia or schizoaffective disorder along with healthy comparison subjects scanned at multiple sites. In this paper, we provide concise descriptions of FBIRN's multi-scanner brain imaging data sets and details about the BIRN Data Repository instance of the Human Imaging Database (HID) used to publicly share the data.
Author	Diaz, Michele O'Leary, Daniel S. Ozyurt, Burak Voyvodic, James T. Jeremy Bockholt, H. Ford, Judith M. Stern, Hal S. Calhoun, Vince D. Belger, Aysenil Gadde, Syam Preda, Adrian Lee, Hyo Jong Wible, Cynthia G. Mueller, Bryon A. Rasmussen, Jerod Keator, David B. Glover, Gary H. van Erp, Theo G.M. Turner, Jessica A. Toga, Arthur W. Mathalon, Daniel H. Potkin, Steven G. McEwen, Sarah McCarthy, Gregory Liu, Thomas T.
AuthorAffiliation	12 Institute for Neuroimaging and Informatics, University of Southern California, Los Angeles, USA 21 Brockton VAMC, Boston, Massachusetts, USA 15 Department of Psychiatry, University of California, San Francisco, California, USA 26 Department of Psychiatry, University of California San Diego, San Diego, California, USA 9 Department of Psychiatry, University of New Mexico, Albuquerque, New Mexico, USA 3 Department of Psychiatry and Neuroscience Institute, Georgia State University, Atlanta, Georgia, USA 5 Department of Psychiatry, University of Minnesota, Minneapolis, Minnesota, USA 13 Keck School of Medicine of USC, University of Southern California, Los Angeles, USA 22 Department of Statistics, University of California, Irvine, California, USA 27 Function Biomedical Informatics Research Network ( www.birncommunity.org ) 23 Department of Psychiatry, University of North Carolina at Chapel Hill, North Carolina, USA 8 Department of ECE, University of New Mexico, Albuquerque, New Mexico, USA 10 Depart
AuthorAffiliation_xml	– name: 12 Institute for Neuroimaging and Informatics, University of Southern California, Los Angeles, USA – name: 15 Department of Psychiatry, University of California, San Francisco, California, USA – name: 18 Department of Psychology, Penn State University, University Park, PA, USA – name: 25 Department of Psychology, Yale University, New Haven, Connecticut, USA – name: 8 Department of ECE, University of New Mexico, Albuquerque, New Mexico, USA – name: 14 Department of Psychology, University of California, Los Angeles, Los Angeles, CA, USA – name: 5 Department of Psychiatry, University of Minnesota, Minneapolis, Minnesota, USA – name: 19 Department of Psychiatry, University of Iowa, Iowa City, Iowa, USA – name: 2 Mind Research Network, Albuquerque, New Mexico, USA – name: 13 Keck School of Medicine of USC, University of Southern California, Los Angeles, USA – name: 24 Department of Psychology, University of North Carolina at Chapel Hill, North Carolina, USA – name: 27 Function Biomedical Informatics Research Network ( www.birncommunity.org ) – name: 23 Department of Psychiatry, University of North Carolina at Chapel Hill, North Carolina, USA – name: 17 San Francisco VA Medical Center, San Francisco, California, USA – name: 20 Department of Psychiatry, Harvard Medical School, Boston, Massachusetts, USA – name: 22 Department of Statistics, University of California, Irvine, California, USA – name: 1 Department of Psychiatry and Human Behavior, University of California Irvine, Irvine, California, USA – name: 16 Brain Imaging and EEG Laboratory, University of California, San Francisco, California, USA – name: 7 Brain Imaging and Analysis Center, Duke University Medical Center, Durham, North Carolina, USA – name: 9 Department of Psychiatry, University of New Mexico, Albuquerque, New Mexico, USA – name: 10 Department of Computer Science and Engineering, Chonbuk National University, Korea – name: 3 Department of Psychiatry and Neuroscience Institute, Georgia State University, Atlanta, Georgia, USA – name: 26 Department of Psychiatry, University of California San Diego, San Diego, California, USA – name: 4 Department of Radiology, Stanford University, Stanford, California, USA – name: 11 Laboratory of Neuro Imaging, University of Southern California, Los Angeles, USA – name: 6 Center for Functional MRI, University of California San Diego, San Diego, California, USA – name: 21 Brockton VAMC, Boston, Massachusetts, USA
Author_xml	– sequence: 1 givenname: David B. surname: Keator fullname: Keator, David B. email: dbkeator@uci.edu organization: Department of Psychiatry and Human Behavior, University of California, Irvine, CA, USA – sequence: 2 givenname: Theo G.M. surname: van Erp fullname: van Erp, Theo G.M. organization: Department of Psychiatry and Human Behavior, University of California, Irvine, CA, USA – sequence: 3 givenname: Jessica A. surname: Turner fullname: Turner, Jessica A. organization: Mind Research Network, Albuquerque, NM, USA – sequence: 4 givenname: Gary H. surname: Glover fullname: Glover, Gary H. organization: Department of Radiology, Stanford University, Stanford, CA, USA – sequence: 5 givenname: Bryon A. surname: Mueller fullname: Mueller, Bryon A. organization: Department of Psychiatry, University of Minnesota, Minneapolis, MN, USA – sequence: 6 givenname: Thomas T. surname: Liu fullname: Liu, Thomas T. organization: Center for Functional MRI, University of California, San Diego, CA, USA – sequence: 7 givenname: James T. surname: Voyvodic fullname: Voyvodic, James T. organization: Brain Imaging and Analysis Center, Duke University Medical Center, Durham, NC, USA – sequence: 8 givenname: Jerod surname: Rasmussen fullname: Rasmussen, Jerod organization: Department of Psychiatry and Human Behavior, University of California, Irvine, CA, USA – sequence: 9 givenname: Vince D. surname: Calhoun fullname: Calhoun, Vince D. organization: Mind Research Network, Albuquerque, NM, USA – sequence: 10 givenname: Hyo Jong surname: Lee fullname: Lee, Hyo Jong organization: Department of Computer Science and Engineering, Chonbuk National University, Republic of Korea – sequence: 11 givenname: Arthur W. surname: Toga fullname: Toga, Arthur W. organization: Laboratory of Neuro Imaging, University of Southern California, Los Angeles, USA – sequence: 12 givenname: Sarah surname: McEwen fullname: McEwen, Sarah organization: Department of Psychology, University of California, Los Angeles, CA, USA – sequence: 13 givenname: Judith M. surname: Ford fullname: Ford, Judith M. organization: Department of Psychiatry, University of California, San Francisco, CA, USA – sequence: 14 givenname: Daniel H. surname: Mathalon fullname: Mathalon, Daniel H. organization: Department of Psychiatry, University of California, San Francisco, CA, USA – sequence: 15 givenname: Michele surname: Diaz fullname: Diaz, Michele organization: Department of Psychology, Penn State University, University Park, PA, USA – sequence: 16 givenname: Daniel S. surname: O'Leary fullname: O'Leary, Daniel S. organization: Department of Psychiatry, University of Iowa, Iowa City, IA, USA – sequence: 17 givenname: H. surname: Jeremy Bockholt fullname: Jeremy Bockholt, H. organization: Department of ECE, University of New Mexico, Albuquerque, NM, USA – sequence: 18 givenname: Syam surname: Gadde fullname: Gadde, Syam organization: Brain Imaging and Analysis Center, Duke University Medical Center, Durham, NC, USA – sequence: 19 givenname: Adrian surname: Preda fullname: Preda, Adrian organization: Department of Psychiatry and Human Behavior, University of California, Irvine, CA, USA – sequence: 20 givenname: Cynthia G. surname: Wible fullname: Wible, Cynthia G. organization: Department of Psychiatry, Harvard Medical School, Boston, MA, USA – sequence: 21 givenname: Hal S. surname: Stern fullname: Stern, Hal S. organization: Department of Statistics, University of California, Irvine, CA, USA – sequence: 22 givenname: Aysenil surname: Belger fullname: Belger, Aysenil organization: Department of Psychiatry, University of North Carolina at Chapel Hill, NC, USA – sequence: 23 givenname: Gregory surname: McCarthy fullname: McCarthy, Gregory organization: Department of Psychology, Yale University, New Haven, CT, USA – sequence: 24 givenname: Burak surname: Ozyurt fullname: Ozyurt, Burak organization: Department of Psychiatry, University of California, San Diego, CA, USA – sequence: 25 givenname: Steven G. surname: Potkin fullname: Potkin, Steven G. organization: Department of Psychiatry and Human Behavior, University of California, Irvine, CA, USA
BackLink	https://www.ncbi.nlm.nih.gov/pubmed/26364863$$D View this record in MEDLINE/PubMed
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ContentType	Journal Article
Copyright	2015 Elsevier Inc. Copyright © 2015 Elsevier Inc. All rights reserved. Copyright Elsevier Limited Jan 1, 2016
Copyright_xml	– notice: 2015 Elsevier Inc. – notice: Copyright © 2015 Elsevier Inc. All rights reserved. – notice: Copyright Elsevier Limited Jan 1, 2016
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SubjectTerms	Access control Adolescent Adult Aged Bioinformatics Biomedical Research Brain mapping Data collection Databases, Factual Datasets Female Functional magnetic resonance imaging Healthy Volunteers Humans Informatics Information Dissemination Magnetic Resonance Imaging Male Medical imaging Medical Informatics Mental disorders Middle Aged Neuroimaging Physiology Psychotic Disorders - pathology Public access Reference Values Scanners Schizoaffective disorder Schizophrenia Schizophrenia - pathology Young Adult
Title	The Function Biomedical Informatics Research Network Data Repository
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