Gene Organization in Rice Revealed by Full-Length cDNA Mapping and Gene Expression Analysis through Microarray

Rice (Oryza sativa L.) is a model organism for the functional genomics of monocotyledonous plants since the genome size is considerably smaller than those of other monocotyledonous plants. Although highly accurate genome sequences of indica and japonica rice are available, additional resources such...

Celý popis

Uloženo v:

Podrobná bibliografie
Vydáno v:	PloS one Ročník 2; číslo 11; s. e1235
Hlavní autoři:	Satoh, Kouji, Doi, Koji, Nagata, Toshifumi, Kishimoto, Naoki, Suzuki, Kohji, Otomo, Yasuhiro, Kawai, Jun, Nakamura, Mari, Hirozane-Kishikawa, Tomoko, Kanagawa, Saeko, Arakawa, Takahiro, Takahashi-Iida, Juri, Murata, Mitsuyoshi, Ninomiya, Noriko, Sasaki, Daisuke, Fukuda, Shiro, Tagami, Michihira, Yamagata, Harumi, Kurita, Kanako, Kamiya, Kozue, Yamamoto, Mayu, Kikuta, Ari, Bito, Takahito, Fujitsuka, Nahoko, Ito, Kazue, Kanamori, Hiroyuki, Choi, Il-Ryong, Nagamura, Yoshiaki, Matsumoto, Takashi, Murakami, Kazuo, Matsubara, Ken-ichi, Carninci, Piero, Hayashizaki, Yoshihide, Kikuchi, Shoshi
Médium:	Journal Article
Jazyk:	angličtina
Vydáno:	United States Public Library of Science 28.11.2007 Public Library of Science (PLoS)
Témata:	Analysis Artificial chromosomes Bacteria Bioassays Biodiversity Biological activity Biological assays Biotechnology Chromosome Mapping Classification Cloning Complementary DNA Coverage Deoxyribonucleic acid DNA DNA microarrays DNA, Complementary - genetics DNA, Plant - genetics E coli Exons Gene expression Gene Expression Profiling Gene families Gene loci Gene mapping Gene sequencing Genes Genetics and Genomics/Plant Genetics and Gene Expression Genomes Genomics Incompatibility Introns Loci Mapping Nucleotide sequence Oryza - genetics Oryza sativa indica Oryza sativa japonica Plant Biology/Plant Genetics and Gene Expression Plant genetics Rice Structure-function relationships Transcription Transcription (Genetics) Transcription factors Japan
ISSN:	1932-6203, 1932-6203
On-line přístup:	Získat plný text
Tagy:	Přidat tag Žádné tagy, Buďte první, kdo vytvoří štítek k tomuto záznamu!

Abstract	Rice (Oryza sativa L.) is a model organism for the functional genomics of monocotyledonous plants since the genome size is considerably smaller than those of other monocotyledonous plants. Although highly accurate genome sequences of indica and japonica rice are available, additional resources such as full-length complementary DNA (FL-cDNA) sequences are also indispensable for comprehensive analyses of gene structure and function. We cross-referenced 28.5K individual loci in the rice genome defined by mapping of 578K FL-cDNA clones with the 56K loci predicted in the TIGR genome assembly. Based on the annotation status and the presence of corresponding cDNA clones, genes were classified into 23K annotated expressed (AE) genes, 33K annotated non-expressed (ANE) genes, and 5.5K non-annotated expressed (NAE) genes. We developed a 60mer oligo-array for analysis of gene expression from each locus. Analysis of gene structures and expression levels revealed that the general features of gene structure and expression of NAE and ANE genes were considerably different from those of AE genes. The results also suggested that the cloning efficiency of rice FL-cDNA is associated with the transcription activity of the corresponding genetic locus, although other factors may also have an effect. Comparison of the coverage of FL-cDNA among gene families suggested that FL-cDNA from genes encoding rice- or eukaryote-specific domains, and those involved in regulatory functions were difficult to produce in bacterial cells. Collectively, these results indicate that rice genes can be divided into distinct groups based on transcription activity and gene structure, and that the coverage bias of FL-cDNA clones exists due to the incompatibility of certain eukaryotic genes in bacteria.
AbstractList	Rice (Oryza sativa L.) is a model organism for the functional genomics of monocotyledonous plants since the genome size is considerably smaller than those of other monocotyledonous plants. Although highly accurate genome sequences of indica and japonica rice are available, additional resources such as full-length complementary DNA (FL-cDNA) sequences are also indispensable for comprehensive analyses of gene structure and function. We cross-referenced 28.5K individual loci in the rice genome defined by mapping of 578K FL-cDNA clones with the 56K loci predicted in the TIGR genome assembly. Based on the annotation status and the presence of corresponding cDNA clones, genes were classified into 23K annotated expressed (AE) genes, 33K annotated non-expressed (ANE) genes, and 5.5K non-annotated expressed (NAE) genes. We developed a 60mer oligo-array for analysis of gene expression from each locus. Analysis of gene structures and expression levels revealed that the general features of gene structure and expression of NAE and ANE genes were considerably different from those of AE genes. The results also suggested that the cloning efficiency of rice FL-cDNA is associated with the transcription activity of the corresponding genetic locus, although other factors may also have an effect. Comparison of the coverage of FL-cDNA among gene families suggested that FL-cDNA from genes encoding rice- or eukaryote-specific domains, and those involved in regulatory functions were difficult to produce in bacterial cells. Collectively, these results indicate that rice genes can be divided into distinct groups based on transcription activity and gene structure, and that the coverage bias of FL-cDNA clones exists due to the incompatibility of certain eukaryotic genes in bacteria. Rice (Oryza sativa L.) is a model organism for the functional genomics of monocotyledonous plants since the genome size is considerably smaller than those of other monocotyledonous plants. Although highly accurate genome sequences of indica and japonica rice are available, additional resources such as full-length complementary DNA (FL-cDNA) sequences are also indispensable for comprehensive analyses of gene structure and function. We cross-referenced 28.5K individual loci in the rice genome defined by mapping of 578K FL-cDNA clones with the 56K loci predicted in the TIGR genome assembly. Based on the annotation status and the presence of corresponding cDNA clones, genes were classified into 23K annotated expressed (AE) genes, 33K annotated non-expressed (ANE) genes, and 5.5K non-annotated expressed (NAE) genes. We developed a 60mer oligo-array for analysis of gene expression from each locus. Analysis of gene structures and expression levels revealed that the general features of gene structure and expression of NAE and ANE genes were considerably different from those of AE genes. The results also suggested that the cloning efficiency of rice FL-cDNA is associated with the transcription activity of the corresponding genetic locus, although other factors may also have an effect. Comparison of the coverage of FL-cDNA among gene families suggested that FL-cDNA from genes encoding rice- or eukaryote-specific domains, and those involved in regulatory functions were difficult to produce in bacterial cells. Collectively, these results indicate that rice genes can be divided into distinct groups based on transcription activity and gene structure, and that the coverage bias of FL-cDNA clones exists due to the incompatibility of certain eukaryotic genes in bacteria.Rice (Oryza sativa L.) is a model organism for the functional genomics of monocotyledonous plants since the genome size is considerably smaller than those of other monocotyledonous plants. Although highly accurate genome sequences of indica and japonica rice are available, additional resources such as full-length complementary DNA (FL-cDNA) sequences are also indispensable for comprehensive analyses of gene structure and function. We cross-referenced 28.5K individual loci in the rice genome defined by mapping of 578K FL-cDNA clones with the 56K loci predicted in the TIGR genome assembly. Based on the annotation status and the presence of corresponding cDNA clones, genes were classified into 23K annotated expressed (AE) genes, 33K annotated non-expressed (ANE) genes, and 5.5K non-annotated expressed (NAE) genes. We developed a 60mer oligo-array for analysis of gene expression from each locus. Analysis of gene structures and expression levels revealed that the general features of gene structure and expression of NAE and ANE genes were considerably different from those of AE genes. The results also suggested that the cloning efficiency of rice FL-cDNA is associated with the transcription activity of the corresponding genetic locus, although other factors may also have an effect. Comparison of the coverage of FL-cDNA among gene families suggested that FL-cDNA from genes encoding rice- or eukaryote-specific domains, and those involved in regulatory functions were difficult to produce in bacterial cells. Collectively, these results indicate that rice genes can be divided into distinct groups based on transcription activity and gene structure, and that the coverage bias of FL-cDNA clones exists due to the incompatibility of certain eukaryotic genes in bacteria.
Audience	Academic
Author	Kishimoto, Naoki Suzuki, Kohji Yamagata, Harumi Matsumoto, Takashi Yamamoto, Mayu Murakami, Kazuo Carninci, Piero Otomo, Yasuhiro Bito, Takahito Satoh, Kouji Hirozane-Kishikawa, Tomoko Ito, Kazue Choi, Il-Ryong Nagamura, Yoshiaki Kurita, Kanako Murata, Mitsuyoshi Arakawa, Takahiro Kikuchi, Shoshi Nagata, Toshifumi Matsubara, Ken-ichi Tagami, Michihira Kawai, Jun Kamiya, Kozue Kanagawa, Saeko Takahashi-Iida, Juri Hayashizaki, Yoshihide Fujitsuka, Nahoko Kanamori, Hiroyuki Doi, Koji Fukuda, Shiro Nakamura, Mari Kikuta, Ari Ninomiya, Noriko Sasaki, Daisuke
AuthorAffiliation	4 Nara Institute of Science and Technology (NAIST), Ikoma, Nara, Japan 5 Genome Exploration Research Group, Genomic Sciences Center, RIKEN Yokohama Institute, Yokohama, Kanagawa, Japan 7 Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki, Japan 2 Hitachi Software Engineering, Shinagawa-ku, Tokyo, Japan 8 Plant Breeding, Genetics and Biotechnology Division, International Rice Research Institute, DAPO, Metro Manila, Philippines Umeå Plant Science Centre, Sweden 6 Genome Science Laboratory, RIKEN Wako Institute, Wako, Saitama, Japan 3 Laboratory of Genome Sequencing and Analysis Group, Foundation for Advancement of International Science (FAIS), Tsukuba, Ibaraki, Japan 1 Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
AuthorAffiliation_xml	– name: 3 Laboratory of Genome Sequencing and Analysis Group, Foundation for Advancement of International Science (FAIS), Tsukuba, Ibaraki, Japan – name: 2 Hitachi Software Engineering, Shinagawa-ku, Tokyo, Japan – name: 7 Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki, Japan – name: 6 Genome Science Laboratory, RIKEN Wako Institute, Wako, Saitama, Japan – name: 4 Nara Institute of Science and Technology (NAIST), Ikoma, Nara, Japan – name: Umeå Plant Science Centre, Sweden – name: 8 Plant Breeding, Genetics and Biotechnology Division, International Rice Research Institute, DAPO, Metro Manila, Philippines – name: 1 Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan – name: 5 Genome Exploration Research Group, Genomic Sciences Center, RIKEN Yokohama Institute, Yokohama, Kanagawa, Japan
Author_xml	– sequence: 1 givenname: Kouji surname: Satoh fullname: Satoh, Kouji – sequence: 2 givenname: Koji surname: Doi fullname: Doi, Koji – sequence: 3 givenname: Toshifumi surname: Nagata fullname: Nagata, Toshifumi – sequence: 4 givenname: Naoki surname: Kishimoto fullname: Kishimoto, Naoki – sequence: 5 givenname: Kohji surname: Suzuki fullname: Suzuki, Kohji – sequence: 6 givenname: Yasuhiro surname: Otomo fullname: Otomo, Yasuhiro – sequence: 7 givenname: Jun surname: Kawai fullname: Kawai, Jun – sequence: 8 givenname: Mari surname: Nakamura fullname: Nakamura, Mari – sequence: 9 givenname: Tomoko surname: Hirozane-Kishikawa fullname: Hirozane-Kishikawa, Tomoko – sequence: 10 givenname: Saeko surname: Kanagawa fullname: Kanagawa, Saeko – sequence: 11 givenname: Takahiro surname: Arakawa fullname: Arakawa, Takahiro – sequence: 12 givenname: Juri surname: Takahashi-Iida fullname: Takahashi-Iida, Juri – sequence: 13 givenname: Mitsuyoshi surname: Murata fullname: Murata, Mitsuyoshi – sequence: 14 givenname: Noriko surname: Ninomiya fullname: Ninomiya, Noriko – sequence: 15 givenname: Daisuke surname: Sasaki fullname: Sasaki, Daisuke – sequence: 16 givenname: Shiro surname: Fukuda fullname: Fukuda, Shiro – sequence: 17 givenname: Michihira surname: Tagami fullname: Tagami, Michihira – sequence: 18 givenname: Harumi surname: Yamagata fullname: Yamagata, Harumi – sequence: 19 givenname: Kanako surname: Kurita fullname: Kurita, Kanako – sequence: 20 givenname: Kozue surname: Kamiya fullname: Kamiya, Kozue – sequence: 21 givenname: Mayu surname: Yamamoto fullname: Yamamoto, Mayu – sequence: 22 givenname: Ari surname: Kikuta fullname: Kikuta, Ari – sequence: 23 givenname: Takahito surname: Bito fullname: Bito, Takahito – sequence: 24 givenname: Nahoko surname: Fujitsuka fullname: Fujitsuka, Nahoko – sequence: 25 givenname: Kazue surname: Ito fullname: Ito, Kazue – sequence: 26 givenname: Hiroyuki surname: Kanamori fullname: Kanamori, Hiroyuki – sequence: 27 givenname: Il-Ryong surname: Choi fullname: Choi, Il-Ryong – sequence: 28 givenname: Yoshiaki surname: Nagamura fullname: Nagamura, Yoshiaki – sequence: 29 givenname: Takashi surname: Matsumoto fullname: Matsumoto, Takashi – sequence: 30 givenname: Kazuo surname: Murakami fullname: Murakami, Kazuo – sequence: 31 givenname: Ken-ichi surname: Matsubara fullname: Matsubara, Ken-ichi – sequence: 32 givenname: Piero surname: Carninci fullname: Carninci, Piero – sequence: 33 givenname: Yoshihide surname: Hayashizaki fullname: Hayashizaki, Yoshihide – sequence: 34 givenname: Shoshi surname: Kikuchi fullname: Kikuchi, Shoshi
BackLink	https://www.ncbi.nlm.nih.gov/pubmed/18043742$$D View this record in MEDLINE/PubMed
BookMark	eNqNk9tr2zAUxs3oWC_bfzA2w6Cwh2S62ZL3MAhd2wXSBbLLq5Bk2VFwJE-yS7O_fsqlW1LWMfxgc_w7n44-vnOaHFlndZK8hGAIMYXvFq73VjTDNpaHAACIcPYkOYEFRoMcAXy0932cnIawACDDLM-fJceQAYIpQSeJvdZWp1NfC2t-is44mxqbzozS6UzfatHoMpWr9KpvmsFE27qbp-rj51F6I9rW2DoVtkw3Epd3rdchrAVGcaxVMCHt5t719Ty9Mco74b1YPU-eVqIJ-sXufZZ8u7r8evFpMJlejy9Gk4GikHQDyirJpARMsKKUeVUQIjMlMAUFyBURAqpKUloArXKFC8UkKCHLtNQlppIQfJa83uq2jQt8Z1XgsMgAJghm2aMEYgXEDJM8EuMtUTqx4K03S-FX3AnDNwXnay58Z1SjOclpVmQwL1ipCJKZBAjROHNVCiIYpFHrw-60Xi51qbTtvGgORA__WDPntbvlCDACCxYFzncC3v3odej40gSlm0ZY7frAc5blgCEcwTcPwL_f_nFq34HhlqpjDrixlYuzqfiUemlUzF1lYn1EKEKY4Gx9zbcHDZHp9F1Xiz4EPv4y-392-v2QPd9j5zGW3Ty4pl_nNRyCr_Z9_m3wfeAjQLZATGQIXld_EMDXe3VvBF_vFd_tVWx7_6BNmW6zLtER0_y7-Re32ib9
CitedBy_id	crossref_primary_10_1002_pmic_200800594 crossref_primary_10_1007_s11032_015_0299_0 crossref_primary_10_1016_j_cj_2021_02_009 crossref_primary_10_1371_journal_pone_0011546 crossref_primary_10_1186_1471_2164_13_309 crossref_primary_10_1038_s41598_021_83162_8 crossref_primary_10_1111_j_1365_2052_2011_02310_x crossref_primary_10_1007_s00122_009_1094_2 crossref_primary_10_1016_j_gene_2013_07_088 crossref_primary_10_1101_gr_106120_110 crossref_primary_10_1104_pp_15_00879 crossref_primary_10_1111_j_1365_313X_2009_04100_x crossref_primary_10_3390_ijms25115952 crossref_primary_10_1111_pce_12130 crossref_primary_10_1186_1471_2229_8_20 crossref_primary_10_1016_j_gpb_2012_12_004 crossref_primary_10_1111_jpi_12011 crossref_primary_10_1007_s11032_009_9367_7 crossref_primary_10_1007_s00438_010_0569_9 crossref_primary_10_1111_jpi_12392 crossref_primary_10_1007_s11427_010_4101_6 crossref_primary_10_1186_1471_2164_13_497 crossref_primary_10_1094_MPMI_23_1_0029 crossref_primary_10_1101_gr_088997_108 crossref_primary_10_1007_s11105_009_0158_4 crossref_primary_10_1007_s10529_010_0377_7 crossref_primary_10_1007_s11103_007_9287_z crossref_primary_10_1016_j_plantsci_2010_08_004 crossref_primary_10_1093_dnares_dsn018 crossref_primary_10_1093_dnares_dsn034 crossref_primary_10_1186_1471_2164_10_415 crossref_primary_10_1111_jpi_12088 crossref_primary_10_1007_s13206_010_4102_3 crossref_primary_10_1104_pp_108_131656 crossref_primary_10_1186_s12284_014_0004_7 crossref_primary_10_1111_jfd_12040 crossref_primary_10_1104_pp_109_149872 crossref_primary_10_1101_gr_131342_111
Cites_doi	10.1038/nature03895 10.1111/j.1399-3054.1962.tb08052.x 10.1007/s10577-006-1104-z 10.1093/nar/gkj154 10.1111/j.1365-313X.2005.02408.x 10.1093/dnares/dsm001 10.1111/j.1365-313X.2006.02684.x 10.1093/nar/gkl908 10.1038/ng887 10.1101/gr.229202 10.1126/science.1068275 10.1126/science.1081288 10.1093/nar/gkj094 10.1094/PHYTO.1999.89.12.1182 10.1186/gb-2006-7-5-r41 10.1126/science.1056794 10.1099/0022-1317-78-12-3141 10.1038/35055500 10.1093/nar/gkj149 10.1038/nbt998 10.1093/nar/gkj077 10.1016/j.gene.2006.09.028 10.1038/ng1289 10.1105/tpc.010274 10.1093/nar/gkl887 10.1046/j.1467-7652.2003.00026.x 10.1016/j.cell.2006.08.003 10.1101/gr.4200206 10.1073/pnas.93.22.12400 10.1016/S1672-0229(03)01005-2 10.1093/nar/gkh085 10.1016/S0021-9258(18)54100-4 10.1093/nar/gkg076 10.1101/gr.5509507 10.1038/ng1704 10.1016/j.tig.2006.08.008 10.1093/nar/gkl841 10.1126/science.1071006 10.1126/science.1068037 10.1126/science.1088305 10.1105/tpc.106.043794 10.1093/nar/gkl976
ContentType	Journal Article
Copyright	COPYRIGHT 2007 Public Library of Science 2007 Satoh et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. Satoh et al. 2007
Copyright_xml	– notice: COPYRIGHT 2007 Public Library of Science – notice: 2007 Satoh et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. – notice: Satoh et al. 2007
DBID	AAYXX CITATION CGR CUY CVF ECM EIF NPM IOV ISR 3V. 7QG 7QL 7QO 7RV 7SN 7SS 7T5 7TG 7TM 7U9 7X2 7X7 7XB 88E 8AO 8C1 8FD 8FE 8FG 8FH 8FI 8FJ 8FK ABJCF ABUWG AEUYN AFKRA ARAPS ATCPS AZQEC BBNVY BENPR BGLVJ BHPHI C1K CCPQU D1I DWQXO FR3 FYUFA GHDGH GNUQQ H94 HCIFZ K9. KB. KB0 KL. L6V LK8 M0K M0S M1P M7N M7P M7S NAPCQ P5Z P62 P64 PATMY PDBOC PHGZM PHGZT PIMPY PJZUB PKEHL PPXIY PQEST PQGLB PQQKQ PQUKI PTHSS PYCSY RC3 PRINS 7X8 5PM DOA
DOI	10.1371/journal.pone.0001235
DatabaseName	CrossRef Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed Gale In Context: Opposing Viewpoints Gale In Context: Science ProQuest Central (Corporate) Animal Behavior Abstracts Bacteriology Abstracts (Microbiology B) Biotechnology Research Abstracts ProQuest Nursing & Allied Health Database Ecology Abstracts Entomology Abstracts (Full archive) Immunology Abstracts Meteorological & Geoastrophysical Abstracts Nucleic Acids Abstracts Virology and AIDS Abstracts Agricultural Science Collection ProQuest Health & Medical Collection ProQuest Central (purchase pre-March 2016) Medical Database (Alumni Edition) ProQuest Pharma Collection Public Health Database Technology Research Database ProQuest SciTech Collection ProQuest Technology Collection ProQuest Natural Science Collection Hospital Premium Collection Hospital Premium Collection (Alumni Edition) ProQuest Central (Alumni) (purchase pre-March 2016) Materials Science & Engineering Collection ProQuest Central (Alumni Edition) ProQuest One Sustainability ProQuest Central UK/Ireland Advanced Technologies & Computer Science Collection Agricultural & Environmental Science Collection ProQuest Central Essentials Biological Science Collection ProQuest Central ProQuest Technology Collection Natural Science Collection Environmental Sciences and Pollution Management ProQuest One Community College ProQuest Materials Science Collection ProQuest Central Korea Engineering Research Database Health Research Premium Collection Health Research Premium Collection (Alumni) ProQuest Central Student AIDS and Cancer Research Abstracts SciTech Premium Collection ProQuest Health & Medical Complete (Alumni) Materials Science Database Nursing & Allied Health Database (Alumni Edition) Meteorological & Geoastrophysical Abstracts - Academic ProQuest Engineering Collection ProQuest Biological Science Collection Agricultural Science Database Health & Medical Collection (Alumni Edition) Medical Database Algology Mycology and Protozoology Abstracts (Microbiology C) Biological Science Database Engineering Database Nursing & Allied Health Premium Advanced Technologies & Aerospace Database ProQuest Advanced Technologies & Aerospace Collection Biotechnology and BioEngineering Abstracts Environmental Science Database Materials Science Collection ProQuest Central Premium ProQuest One Academic (New) Publicly Available Content Database ProQuest Health & Medical Research Collection ProQuest One Academic Middle East (New) ProQuest One Health & Nursing ProQuest One Academic Eastern Edition (DO NOT USE) ProQuest One Applied & Life Sciences ProQuest One Academic (retired) ProQuest One Academic UKI Edition Engineering Collection Environmental Science Collection Genetics Abstracts ProQuest Central China MEDLINE - Academic PubMed Central (Full Participant titles) DOAJ Directory of Open Access Journals
DatabaseTitle	CrossRef MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) Agricultural Science Database Publicly Available Content Database ProQuest Central Student ProQuest Advanced Technologies & Aerospace Collection ProQuest Central Essentials Nucleic Acids Abstracts SciTech Premium Collection Environmental Sciences and Pollution Management ProQuest One Applied & Life Sciences ProQuest One Sustainability Health Research Premium Collection Meteorological & Geoastrophysical Abstracts Natural Science Collection Health & Medical Research Collection Biological Science Collection ProQuest Central (New) ProQuest Medical Library (Alumni) Engineering Collection Advanced Technologies & Aerospace Collection Engineering Database Virology and AIDS Abstracts ProQuest Biological Science Collection ProQuest One Academic Eastern Edition Agricultural Science Collection ProQuest Hospital Collection ProQuest Technology Collection Health Research Premium Collection (Alumni) Biological Science Database Ecology Abstracts ProQuest Hospital Collection (Alumni) Biotechnology and BioEngineering Abstracts Environmental Science Collection Entomology Abstracts Nursing & Allied Health Premium ProQuest Health & Medical Complete ProQuest One Academic UKI Edition Environmental Science Database ProQuest Nursing & Allied Health Source (Alumni) Engineering Research Database ProQuest One Academic Meteorological & Geoastrophysical Abstracts - Academic ProQuest One Academic (New) Technology Collection Technology Research Database ProQuest One Academic Middle East (New) Materials Science Collection ProQuest Health & Medical Complete (Alumni) ProQuest Central (Alumni Edition) ProQuest One Community College ProQuest One Health & Nursing ProQuest Natural Science Collection ProQuest Pharma Collection ProQuest Central ProQuest Health & Medical Research Collection Genetics Abstracts ProQuest Engineering Collection Biotechnology Research Abstracts Health and Medicine Complete (Alumni Edition) ProQuest Central Korea Bacteriology Abstracts (Microbiology B) Algology Mycology and Protozoology Abstracts (Microbiology C) Agricultural & Environmental Science Collection AIDS and Cancer Research Abstracts Materials Science Database ProQuest Materials Science Collection ProQuest Public Health ProQuest Nursing & Allied Health Source ProQuest SciTech Collection Advanced Technologies & Aerospace Database ProQuest Medical Library Animal Behavior Abstracts Materials Science & Engineering Collection Immunology Abstracts ProQuest Central (Alumni) ProQuest Central China MEDLINE - Academic
DatabaseTitleList	MEDLINE - Academic Agricultural Science Database MEDLINE Agricultural Science Database
Database_xml	– sequence: 1 dbid: DOA name: DOAJ Directory of Open Access Journals url: https://www.doaj.org/ sourceTypes: Open Website – sequence: 2 dbid: NPM name: PubMed url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 3 dbid: PIMPY name: Publicly Available Content Database url: http://search.proquest.com/publiccontent sourceTypes: Aggregation Database
DeliveryMethod	fulltext_linktorsrc
Discipline	Sciences (General)
DocumentTitleAlternate	Rice Transcriptome Mapping
EISSN	1932-6203
ExternalDocumentID	1950342155 1289138346 oai_doaj_org_article_4675951698dc42b5b022744bfda4a817 PMC2084198 2896734821 A472234357 18043742 10_1371_journal_pone_0001235
Genre	Research Support, Non-U.S. Gov't Journal Article
GeographicLocations	Japan
GeographicLocations_xml	– name: Japan
GroupedDBID	--- 123 29O 2WC 53G 5VS 7RV 7X2 7X7 7XC 88E 8AO 8C1 8CJ 8FE 8FG 8FH 8FI 8FJ A8Z AAFWJ AAUCC AAWOE AAYXX ABIVO ABJCF ABUWG ACCTH ACGFO ACIHN ACIWK ACPRK ADBBV ADRAZ AEAQA AENEX AEUYN AFFHD AFKRA AFPKN AFRAH AHMBA ALMA_UNASSIGNED_HOLDINGS AOIJS ARAPS ATCPS BAWUL BBNVY BCNDV BENPR BGLVJ BHPHI BKEYQ BPHCQ BVXVI BWKFM CCPQU CITATION CS3 D1I D1J D1K DIK DU5 E3Z ESX EX3 F5P FPL FYUFA GROUPED_DOAJ GX1 HCIFZ HH5 HMCUK HYE IAO IEA IGS IHR IHW INH INR IOV IPY ISE ISR ITC K6- KB. KQ8 L6V LK5 LK8 M0K M1P M48 M7P M7R M7S M~E NAPCQ O5R O5S OK1 OVT P2P P62 PATMY PDBOC PHGZM PHGZT PIMPY PJZUB PPXIY PQGLB PQQKQ PROAC PSQYO PTHSS PYCSY RNS RPM TR2 UKHRP WOQ WOW ~02 ~KM ALIPV CGR CUY CVF ECM EIF NPM BBORY 3V. 7QG 7QL 7QO 7SN 7SS 7T5 7TG 7TM 7U9 7XB 8FD 8FK AZQEC C1K DWQXO FR3 GNUQQ H94 K9. KL. M7N P64 PKEHL PQEST PQUKI RC3 PRINS 7X8 PUEGO 5PM AAPBV ABPTK N95
ID	FETCH-LOGICAL-c714t-78fb8bb08a89db6f944b5ca370906c4aa1cfb7790ec6c39c8b0d185ebed37b443
IEDL.DBID	FPL
ISICitedReferencesCount	43
ISICitedReferencesURI	http://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=Summon&SrcAuth=ProQuest&DestLinkType=CitingArticles&DestApp=WOS_CPL&KeyUT=000207459300016&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D
ISSN	1932-6203
IngestDate	Sun Jul 02 11:04:19 EDT 2023 Sun Jul 02 11:04:12 EDT 2023 Mon Nov 10 04:25:12 EST 2025 Tue Nov 04 01:54:50 EST 2025 Thu Oct 02 12:12:53 EDT 2025 Tue Oct 07 09:15:21 EDT 2025 Sat Nov 29 14:52:10 EST 2025 Tue Nov 04 18:48:26 EST 2025 Thu Nov 13 14:50:18 EST 2025 Thu Nov 13 14:32:21 EST 2025 Thu May 22 20:57:14 EDT 2025 Mon Jul 21 05:52:37 EDT 2025 Sat Nov 29 01:52:13 EST 2025 Tue Nov 18 22:28:46 EST 2025
IsDoiOpenAccess	true
IsOpenAccess	true
IsPeerReviewed	true
IsScholarly	true
Issue	11
Language	English
License	This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. Creative Commons Attribution License
LinkModel	DirectLink
MergedId	FETCHMERGED-LOGICAL-c714t-78fb8bb08a89db6f944b5ca370906c4aa1cfb7790ec6c39c8b0d185ebed37b443
Notes	ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 content type line 23 Conceived and designed the experiments: YH PC JK S Kikuchi K Matsubara K Murakami. Performed the experiments: K Kamiya K Kurita MY AK TB NF KI YN SF MT NN HK TM K Satoh YO IC MN TH S Kanagawa TA JT MM DS HY. Analyzed the data: K Satoh TN K Suzuki KD. Contributed reagents/materials/analysis tools: K Satoh NK. Wrote the paper: K Satoh IC.
OpenAccessLink	http://dx.doi.org/10.1371/journal.pone.0001235
PMID	18043742
PQID	1289138346
PQPubID	1436336
PageCount	e1235
ParticipantIDs	plos_journals_1950342155 plos_journals_1289138346 doaj_primary_oai_doaj_org_article_4675951698dc42b5b022744bfda4a817 pubmedcentral_primary_oai_pubmedcentral_nih_gov_2084198 proquest_miscellaneous_68560823 proquest_journals_1950342155 proquest_journals_1289138346 gale_infotracacademiconefile_A472234357 gale_incontextgauss_ISR_A472234357 gale_incontextgauss_IOV_A472234357 gale_healthsolutions_A472234357 pubmed_primary_18043742 crossref_primary_10_1371_journal_pone_0001235 crossref_citationtrail_10_1371_journal_pone_0001235
PublicationCentury	2000
PublicationDate	2007-11-28
PublicationDateYYYYMMDD	2007-11-28
PublicationDate_xml	– month: 11 year: 2007 text: 2007-11-28 day: 28
PublicationDecade	2000
PublicationPlace	United States
PublicationPlace_xml	– name: United States – name: San Francisco – name: San Francisco, USA
PublicationTitle	PloS one
PublicationTitleAlternate	PLoS One
PublicationYear	2007
Publisher	Public Library of Science Public Library of Science (PLoS)
Publisher_xml	– name: Public Library of Science – name: Public Library of Science (PLoS)
References	X Zhang (ref33) 2006; 126 H Mizuno (ref41) 2006; 46 (ref15) 2007; 17 XY Ren (ref12) 2006; 22 JG Gibbings (ref22) 2003; 1 DM Riano-Pachon (ref11) 2007 FF Costa (ref40) 2007; 386 H Yan (ref31) 2006; 18 IR Choi (ref38) 1999; 89 K Yamada (ref24) 2003; 302 MJ Lercher (ref28) 2002; 31 H Mizuno (ref32) 2006; 13 H Ohyanagi (ref14) 2006 T Imanishi (ref19) 2004 H Lin (ref13) 2006 J Yu (ref2) 2002; 296 J Yu (ref3) 2005 (ref4) 2005; 436 M Nakano (ref21) 2006; 34(Database issue) T Barrett (ref45) 2007; 35(Database issue) SY Rhee (ref25) 2003; 31 IE Johansen (ref36) 1996; 93 T Ravasi (ref26) 2006; 16 WJ Kent (ref43) 2002; 12 J Wu (ref6) 2002; 14 SA Goff (ref1) 2002; 296 RD Finn (ref34) 2006; 34(Database issue) G Jakab (ref37) 1997; 78 T Murashige (ref44) 1962; 15 S Ouyang (ref9) 2007; 35(Database issue) H Yan (ref29) 2007; 15 P Jaiswal (ref10) 2006; 34(Database issue) (ref20) 2001; 409 Y Zhou (ref7) 2003; 1 S Hashimoto (ref23) 2004; 22 H Caron (ref27) 2001; 291 H Sugawara (ref42) 2007; 35(Database issue) (ref5) 2003; 301 W Zhao (ref16) 2004; 32(Database issue) K Nagaki (ref30) 2004; 36 L Li (ref17) 2006; 38 K Nadeau (ref39) 1993; 268 M Seki (ref18) 2002; 296 J Zhang (ref8) 2005; 42 NJ Mulder (ref35) 2007; 35(Database issue) 17113247 - Gene. 2007 Jan 15;386(1-2):1-10 17295128 - Chromosome Res. 2007;15(1):77-84 17099226 - Nucleic Acids Res. 2007 Jan;35(Database issue):D760-5 17145706 - Nucleic Acids Res. 2007 Jan;35(Database issue):D883-7 16949657 - Cell. 2006 Sep 22;126(6):1189-201 16877494 - Plant Cell. 2006 Sep;18(9):2123-33 14716315 - Nat Genet. 2004 Feb;36(2):138-45 14593172 - Science. 2003 Oct 31;302(5646):842-6 14681438 - Nucleic Acids Res. 2004 Jan 1;32(Database issue):D377-82 11935018 - Science. 2002 Apr 5;296(5565):92-100 16719932 - Genome Biol. 2006;7(5):R41 17286856 - BMC Bioinformatics. 2007;8:42 16623884 - Plant J. 2006 Apr;46(2):206-17 17202162 - Nucleic Acids Res. 2007 Jan;35(Database issue):D224-8 17298954 - DNA Res. 2006 Dec 31;13(6):267-74 16381968 - Nucleic Acids Res. 2006 Jan 1;34(Database issue):D731-5 11181992 - Science. 2001 Feb 16;291(5507):1289-92 17108353 - Nucleic Acids Res. 2007 Jan;35(Database issue):D13-5 11910001 - Plant Cell. 2002 Mar;14(3):525-35 8419347 - J Biol Chem. 1993 Jan 15;268(2):1479-87 17210932 - Genome Res. 2007 Feb;17(2):175-83 11217851 - Nature. 2001 Feb 8;409(6821):685-90 16934358 - Trends Genet. 2006 Oct;22(10):528-32 11910074 - Science. 2002 Apr 5;296(5565):141-5 15300261 - Nat Biotechnol. 2004 Sep;22(9):1146-9 16381971 - Nucleic Acids Res. 2006 Jan 1;34(Database issue):D741-4 18944643 - Phytopathology. 1999 Dec;89(12):1182-5 8901593 - Proc Natl Acad Sci U S A. 1996 Oct 29;93(22):12400-5 11992122 - Nat Genet. 2002 Jun;31(2):180-3 16344565 - Genome Res. 2006 Jan;16(1):11-9 15685292 - PLoS Biol. 2005 Feb;3(2):e38 15103394 - PLoS Biol. 2004 Jun;2(6):e162 16369532 - Nat Genet. 2006 Jan;38(1):124-9 17163904 - Plant Biotechnol J. 2003 Jul;1(4):271-85 15918889 - Plant J. 2005 Jun;42(5):772-80 12519987 - Nucleic Acids Res. 2003 Jan 1;31(1):224-8 12869764 - Science. 2003 Jul 18;301(5631):376-9 11935017 - Science. 2002 Apr 5;296(5565):79-92 16381966 - Nucleic Acids Res. 2006 Jan 1;34(Database issue):D717-23 9400962 - J Gen Virol. 1997 Dec;78 ( Pt 12):3141-5 15626331 - Genomics Proteomics Bioinformatics. 2003 Feb;1(1):26-42 16381856 - Nucleic Acids Res. 2006 Jan 1;34(Database issue):D247-51 11932250 - Genome Res. 2002 Apr;12(4):656-64 16100779 - Nature. 2005 Aug 11;436(7052):793-800
References_xml	– volume: 436 start-page: 793 year: 2005 ident: ref4 article-title: The map-based sequence of the rice genome. publication-title: Nature doi: 10.1038/nature03895 – volume: 15 start-page: 473 year: 1962 ident: ref44 article-title: A revised medium for rapid growth and bioassays with tobacco tissue cultures. publication-title: Physiol Plant doi: 10.1111/j.1399-3054.1962.tb08052.x – volume: 15 start-page: 77 year: 2007 ident: ref29 article-title: Rice as a model for centromere and heterochromatin research. publication-title: Chromosome Res doi: 10.1007/s10577-006-1104-z – volume: 34(Database issue) start-page: D717 year: 2006 ident: ref10 article-title: Gramene: a bird's eye view of cereal genomes. publication-title: Nucleic Acids Res doi: 10.1093/nar/gkj154 – volume: 42 start-page: 772 year: 2005 ident: ref8 article-title: Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63. publication-title: Plant J doi: 10.1111/j.1365-313X.2005.02408.x – volume: 13 start-page: 267 year: 2006 ident: ref32 article-title: Identification and mapping of expressed genes, simple sequence repeats and transposable elements in centromeric regions of rice chromosomes. publication-title: DNA Res doi: 10.1093/dnares/dsm001 – volume: 46 start-page: 206 year: 2006 ident: ref41 article-title: Sequencing and characterization of telomere and subtelomere regions on rice chromosomes 1S, 2S, 2L, 6L, 7S, 7L and 8S. publication-title: Plant J doi: 10.1111/j.1365-313X.2006.02684.x – volume: 35(Database issue) start-page: D13 year: 2007 ident: ref42 article-title: DDBJ working on evaluation and classification of bacterial genes in INSDC. publication-title: Nucleic Acids Res doi: 10.1093/nar/gkl908 – volume: 31 start-page: 180 year: 2002 ident: ref28 article-title: Clustering of housekeeping genes provides a unified model of gene order in the human genome. publication-title: Nat Genet doi: 10.1038/ng887 – volume: 12 start-page: 656 year: 2002 ident: ref43 article-title: BLAT: The BLAST-like alignment tool. publication-title: Genome Res doi: 10.1101/gr.229202 – volume: 296 start-page: 92 year: 2002 ident: ref1 article-title: A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). publication-title: Science doi: 10.1126/science.1068275 – volume: 301 start-page: 376 year: 2003 ident: ref5 article-title: Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. publication-title: Science doi: 10.1126/science.1081288 – start-page: D741 year: 2006 ident: ref14 article-title: The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. publication-title: Nucleic Acids Res 34(Database issue) doi: 10.1093/nar/gkj094 – volume: 89 start-page: 1182 year: 1999 ident: ref38 article-title: Fully biologically active in vitro transcripts of the eriophyid mite-transmitted wheat streak mosaic tritimovirus. publication-title: Phytopathology doi: 10.1094/PHYTO.1999.89.12.1182 – year: 2006 ident: ref13 article-title: Intron gain and loss in segmentally duplicated genes in rice. doi: 10.1186/gb-2006-7-5-r41 – volume: 291 start-page: 1289 year: 2001 ident: ref27 article-title: The human transcriptome map: clustering of highly expressed genes in chromosomal domains. publication-title: Science. doi: 10.1126/science.1056794 – year: 2007 ident: ref11 article-title: PlnTFDB: an integrative plant transcription factor database. – volume: 78 start-page: 3141 year: 1997 ident: ref37 article-title: Infectious in vivo and in vitro transcripts from a full-length cDNA clone of PVY-N605, a Swiss necrotic isolate of potato virus Y. publication-title: J Gen Virol doi: 10.1099/0022-1317-78-12-3141 – volume: 409 start-page: 685 year: 2001 ident: ref20 article-title: Functional annotation of a full-length mouse cDNA collection. publication-title: Nature doi: 10.1038/35055500 – volume: 34(Database issue) start-page: D247 year: 2006 ident: ref34 article-title: Pfam: clans, web tools and services. publication-title: Nucleic Acids Res doi: 10.1093/nar/gkj149 – volume: 22 start-page: 1146 year: 2004 ident: ref23 article-title: 5′-end SAGE for the analysis of transcriptional start sites. publication-title: Nat Biotechnol. doi: 10.1038/nbt998 – volume: 34(Database issue) start-page: D731 year: 2006 ident: ref21 article-title: Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA. publication-title: Nucleic Acids Res doi: 10.1093/nar/gkj077 – volume: 386 start-page: 1 year: 2007 ident: ref40 article-title: Non-coding RNAs: lost in translation? publication-title: Gene doi: 10.1016/j.gene.2006.09.028 – year: 2005 ident: ref3 article-title: The genomes of Oryza sativa: a history of duplications. – volume: 36 start-page: 138 year: 2004 ident: ref30 article-title: Sequencing of a rice centromere uncovers active genes. publication-title: Nat Genet doi: 10.1038/ng1289 – volume: 14 start-page: 525 year: 2002 ident: ref6 article-title: A comprehensive rice transcript map containing 6591 expressed sequence tag sites. publication-title: Plant Cell doi: 10.1105/tpc.010274 – volume: 35(Database issue) start-page: D760 year: 2007 ident: ref45 article-title: NCBI GEO: mining tens of millions of expression profiles–database and tools update. publication-title: Nucleic Acids Res doi: 10.1093/nar/gkl887 – volume: 1 start-page: 271 year: 2003 ident: ref22 article-title: Global transcript analysis of rice leaf and seed using SAGE technology. publication-title: Plant Biotechnol J doi: 10.1046/j.1467-7652.2003.00026.x – volume: 126 start-page: 1189 year: 2006 ident: ref33 article-title: Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. publication-title: Cell doi: 10.1016/j.cell.2006.08.003 – volume: 16 start-page: 11 year: 2006 ident: ref26 article-title: Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome. publication-title: Genome Res doi: 10.1101/gr.4200206 – volume: 93 start-page: 12400 year: 1996 ident: ref36 article-title: Intron insertion facilitates amplification of cloned virus cDNA in Escherichia coli while biological activity is reestablished after transcription in vivo. publication-title: Proc Natl Acad Sci USA doi: 10.1073/pnas.93.22.12400 – volume: 1 start-page: 26 year: 2003 ident: ref7 article-title: Gene identification and expression analysis of 86,136 Expressed Sequence Tags (EST) from the rice genome. publication-title: Genomics Proteomics Bioinformatics doi: 10.1016/S1672-0229(03)01005-2 – volume: 32(Database issue) start-page: D377 year: 2004 ident: ref16 article-title: BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics. publication-title: Nucleic Acids Res doi: 10.1093/nar/gkh085 – volume: 268 start-page: 1479 year: 1993 ident: ref39 article-title: Hsp90 chaperonins possess ATPase activity and bind heat shock transcription factors and peptidyl prolyl isomerases. publication-title: J Biol Chem doi: 10.1016/S0021-9258(18)54100-4 – year: 2004 ident: ref19 article-title: Integrative annotation of 21,037 human genes validated by full-length cDNA clones. PLoS Biol 2. – volume: 31 start-page: 224 year: 2003 ident: ref25 article-title: The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. publication-title: Nucleic Acids Res doi: 10.1093/nar/gkg076 – volume: 17 start-page: 175 year: 2007 ident: ref15 article-title: Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. publication-title: Genome Res doi: 10.1101/gr.5509507 – volume: 38 start-page: 124 year: 2006 ident: ref17 article-title: Genome-wide transcription analyses in rice using tiling microarrays. publication-title: Nat Genet doi: 10.1038/ng1704 – volume: 22 start-page: 528 year: 2006 ident: ref12 article-title: In plants, highly expressed genes are the least compact. publication-title: Trends Genet doi: 10.1016/j.tig.2006.08.008 – volume: 35(Database issue) start-page: D224 year: 2007 ident: ref35 article-title: New developments in the InterPro database. publication-title: Nucleic Acids Res doi: 10.1093/nar/gkl841 – volume: 296 start-page: 141 year: 2002 ident: ref18 article-title: Functional annotation of a full-length Arabidopsis cDNA collection. publication-title: Science doi: 10.1126/science.1071006 – volume: 296 start-page: 79 year: 2002 ident: ref2 article-title: A draft sequence of the rice genome (Oryza sativa L. ssp. indica). publication-title: Science doi: 10.1126/science.1068037 – volume: 302 start-page: 842 year: 2003 ident: ref24 article-title: Empirical analysis of transcriptional activity in the Arabidopsis genome. publication-title: Science doi: 10.1126/science.1088305 – volume: 18 start-page: 2123 year: 2006 ident: ref31 article-title: Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere. publication-title: Plant Cell doi: 10.1105/tpc.106.043794 – volume: 35(Database issue) start-page: D883 year: 2007 ident: ref9 article-title: The TIGR Rice Genome Annotation Resource: improvements and new features. publication-title: Nucleic Acids Res doi: 10.1093/nar/gkl976 – reference: 17099226 - Nucleic Acids Res. 2007 Jan;35(Database issue):D760-5 – reference: 14716315 - Nat Genet. 2004 Feb;36(2):138-45 – reference: 14593172 - Science. 2003 Oct 31;302(5646):842-6 – reference: 16934358 - Trends Genet. 2006 Oct;22(10):528-32 – reference: 16623884 - Plant J. 2006 Apr;46(2):206-17 – reference: 17108353 - Nucleic Acids Res. 2007 Jan;35(Database issue):D13-5 – reference: 11910001 - Plant Cell. 2002 Mar;14(3):525-35 – reference: 15918889 - Plant J. 2005 Jun;42(5):772-80 – reference: 15626331 - Genomics Proteomics Bioinformatics. 2003 Feb;1(1):26-42 – reference: 15103394 - PLoS Biol. 2004 Jun;2(6):e162 – reference: 14681438 - Nucleic Acids Res. 2004 Jan 1;32(Database issue):D377-82 – reference: 17210932 - Genome Res. 2007 Feb;17(2):175-83 – reference: 16369532 - Nat Genet. 2006 Jan;38(1):124-9 – reference: 16381971 - Nucleic Acids Res. 2006 Jan 1;34(Database issue):D741-4 – reference: 16877494 - Plant Cell. 2006 Sep;18(9):2123-33 – reference: 15685292 - PLoS Biol. 2005 Feb;3(2):e38 – reference: 16381966 - Nucleic Acids Res. 2006 Jan 1;34(Database issue):D717-23 – reference: 11932250 - Genome Res. 2002 Apr;12(4):656-64 – reference: 9400962 - J Gen Virol. 1997 Dec;78 ( Pt 12):3141-5 – reference: 11935018 - Science. 2002 Apr 5;296(5565):92-100 – reference: 16381968 - Nucleic Acids Res. 2006 Jan 1;34(Database issue):D731-5 – reference: 11217851 - Nature. 2001 Feb 8;409(6821):685-90 – reference: 16949657 - Cell. 2006 Sep 22;126(6):1189-201 – reference: 17202162 - Nucleic Acids Res. 2007 Jan;35(Database issue):D224-8 – reference: 11992122 - Nat Genet. 2002 Jun;31(2):180-3 – reference: 16100779 - Nature. 2005 Aug 11;436(7052):793-800 – reference: 8901593 - Proc Natl Acad Sci U S A. 1996 Oct 29;93(22):12400-5 – reference: 16344565 - Genome Res. 2006 Jan;16(1):11-9 – reference: 12869764 - Science. 2003 Jul 18;301(5631):376-9 – reference: 18944643 - Phytopathology. 1999 Dec;89(12):1182-5 – reference: 16719932 - Genome Biol. 2006;7(5):R41 – reference: 17286856 - BMC Bioinformatics. 2007;8:42 – reference: 8419347 - J Biol Chem. 1993 Jan 15;268(2):1479-87 – reference: 17295128 - Chromosome Res. 2007;15(1):77-84 – reference: 11181992 - Science. 2001 Feb 16;291(5507):1289-92 – reference: 11910074 - Science. 2002 Apr 5;296(5565):141-5 – reference: 17113247 - Gene. 2007 Jan 15;386(1-2):1-10 – reference: 17298954 - DNA Res. 2006 Dec 31;13(6):267-74 – reference: 15300261 - Nat Biotechnol. 2004 Sep;22(9):1146-9 – reference: 17145706 - Nucleic Acids Res. 2007 Jan;35(Database issue):D883-7 – reference: 11935017 - Science. 2002 Apr 5;296(5565):79-92 – reference: 17163904 - Plant Biotechnol J. 2003 Jul;1(4):271-85 – reference: 16381856 - Nucleic Acids Res. 2006 Jan 1;34(Database issue):D247-51 – reference: 12519987 - Nucleic Acids Res. 2003 Jan 1;31(1):224-8
SSID	ssj0053866
Score	2.1228166
Snippet	Rice (Oryza sativa L.) is a model organism for the functional genomics of monocotyledonous plants since the genome size is considerably smaller than those of...
SourceID	plos doaj pubmedcentral proquest gale pubmed crossref
SourceType	Open Website Open Access Repository Aggregation Database Index Database Enrichment Source
StartPage	e1235
SubjectTerms	Analysis Artificial chromosomes Bacteria Bioassays Biodiversity Biological activity Biological assays Biotechnology Chromosome Mapping Classification Cloning Complementary DNA Coverage Deoxyribonucleic acid DNA DNA microarrays DNA, Complementary - genetics DNA, Plant - genetics E coli Exons Gene expression Gene Expression Profiling Gene families Gene loci Gene mapping Gene sequencing Genes Genetics and Genomics/Plant Genetics and Gene Expression Genomes Genomics Incompatibility Introns Loci Mapping Nucleotide sequence Oryza - genetics Oryza sativa indica Oryza sativa japonica Plant Biology/Plant Genetics and Gene Expression Plant genetics Rice Structure-function relationships Transcription Transcription (Genetics) Transcription factors
SummonAdditionalLinks	– databaseName: DOAJ Directory of Open Access Journals dbid: DOA link: http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV1Lb9QwELbQigMXRHk1UKiFkIBD2iR2Evu4PCqQ0IJ4VL1ZtpNsV2qd1WYX0X_PTOxdNrBSOXCL4nGUzMsz8cxnQp4jhBim0jHECgYSlKKIZZ5VcV1ntdVMN7bvkDv9WE4m4uxMft466gtrwjw8sGfcMRhyLnEzR1SWZyY3iHnHuWkqzbVI-z5yiHrWyZT3wWDFRREa5ViZHge5HM1bVx8lvkF0sBD1eP0brzyaX7TdrpDzz8rJraXo5A65HWJIOvbvvkdu1O4u2QtW2tGXAUr61T3i8JK2W_2WdOYo4ghRhG6C16iouaL4Dz7GI1WW59S-nYzppUbYhinVrqJTfET9MxTMOrjnYUxoOOKHXmJNn14s9NV98v3k3bc37-NwwkJsy5Qv41I0RhiTCC0k9uNJYGwOIioTmRSWa53axiAiYW0Ly6QVJqlggQfBV6w0nLMHZOSAp_uE6oQxWzc6z7VE0DfZ5LzkFvKVCmIc3USErdmtbIAfx1MwLlS_p1ZCGuK5p1BIKggpIvFm1tzDb1xD_xoluaFF8Oz-BnBaBZVS16lURA5RD5TvRN24ADVGYE0G8SVQPOspEEDDYYXOVK-6Tn34dPoPRF-_DIheBKKmBXZYHboi4JsQmGtAuY9quf7sTkFkIVMmGC_-HpI5QjtCrBiRg7UW7565a3hr9uFmGNwO7iVpV7erThUCQmWRsYg89BbxWzwC4bJ4FpFyYCsDmQxH3Oy8BzYHQ-apFI_-hxAfk1v9b_g0jTNxQEbLxap-Qm7aH8tZt3jae4tf_aRu6w priority: 102 providerName: Directory of Open Access Journals – databaseName: Biological Science Database dbid: M7P link: http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwpV3db9MwELeg8MALMD62wGAWQgIesuXDSewnVGATSFuZCkx7s2zH6SpNTmm6if33-Byna6ACJN6q-BzVuQ_f2Xe_Q-glQIhBKB1aX0HaACXPQ5YlZah1opVIRaVchdzJYTEa0dNTduwP3BqfVtnZRGeoy1rBGfmetaMstuEUyd_OvofQNQpuV30LjZvoFqAkpC5177izxFaX89yXy6VFvOe5szurjd6N2jLR3nbkUPuXtnkwO6-bdY7nr_mTKxvSwb3_Xcp9dNe7onjYys4GuqHNA7Thlb3Brz0i9ZuHyMBPvFq2iacGj62NwWN9Ca5mieUVhnA2PNRmsjjD6sNoiI8EoD9MsDAldq_Y_-Hzbg3u0FCw7xSEjyA1UMzn4uoR-naw__X9x9A3aghVEZNFWNBKUikjKiiDsj5GiMwsp4uIRbkiQsSqkgBsqFWuUqaojErrJ1j5KdNCEpI-RgNjmbKFsIjSVOlKZJlggB3HqowURNmwp7SukqgClHb84sqjmEMzjXPuruYKG820X48Dl7nncoDC5axZi-LxF_p3IApLWsDgdg_q-YR7leZ2i8kYXDPSUpFEZhLQGO3Kq1IQQeMiQDsgSLwtaF1aEj4EfM7UuqmW4oWjABwOA4k-E3HRNPzT55N_IPoy7hG98kRVbT-HEr64wq4J8L16lFsg192yG34tjb8PsQwQIq3LGaDtTpTXz1w3vDJ7ZzlsrRdcSQmj64uG59R63DRJA7TZqtQ1eyigbpEkQEVP2Xo86Y-Y6ZnDR08iSmJGn_z5Pz9Fd9w5fRyHCd1Gg8X8Qj9Dt9XlYtrMnztD8hOqwHzL priority: 102 providerName: ProQuest
Title	Gene Organization in Rice Revealed by Full-Length cDNA Mapping and Gene Expression Analysis through Microarray
URI	https://www.ncbi.nlm.nih.gov/pubmed/18043742 https://www.proquest.com/docview/1289138346 https://www.proquest.com/docview/1950342155 https://www.proquest.com/docview/68560823 https://pubmed.ncbi.nlm.nih.gov/PMC2084198 https://doaj.org/article/4675951698dc42b5b022744bfda4a817 http://dx.doi.org/10.1371/journal.pone.0001235
Volume	2
WOSCitedRecordID	wos000207459300016&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D
hasFullText	1
inHoldings	1
isFullTextHit
isPrint
journalDatabaseRights	– providerCode: PRVAON databaseName: DOAJ Directory of Open Access Journals customDbUrl: eissn: 1932-6203 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0053866 issn: 1932-6203 databaseCode: DOA dateStart: 20060101 isFulltext: true titleUrlDefault: https://www.doaj.org/ providerName: Directory of Open Access Journals – providerCode: PRVHPJ databaseName: ROAD: Directory of Open Access Scholarly Resources customDbUrl: eissn: 1932-6203 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0053866 issn: 1932-6203 databaseCode: M~E dateStart: 20060101 isFulltext: true titleUrlDefault: https://road.issn.org providerName: ISSN International Centre – providerCode: PRVPQU databaseName: Advanced Technologies & Aerospace Database customDbUrl: eissn: 1932-6203 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0053866 issn: 1932-6203 databaseCode: P5Z dateStart: 20061201 isFulltext: true titleUrlDefault: https://search.proquest.com/hightechjournals providerName: ProQuest – providerCode: PRVPQU databaseName: Agriculture Science Database customDbUrl: eissn: 1932-6203 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0053866 issn: 1932-6203 databaseCode: M0K dateStart: 20061201 isFulltext: true titleUrlDefault: https://search.proquest.com/agriculturejournals providerName: ProQuest – providerCode: PRVPQU databaseName: Biological Science Database customDbUrl: eissn: 1932-6203 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0053866 issn: 1932-6203 databaseCode: M7P dateStart: 20061201 isFulltext: true titleUrlDefault: http://search.proquest.com/biologicalscijournals providerName: ProQuest – providerCode: PRVPQU databaseName: Engineering Database customDbUrl: eissn: 1932-6203 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0053866 issn: 1932-6203 databaseCode: M7S dateStart: 20061201 isFulltext: true titleUrlDefault: http://search.proquest.com providerName: ProQuest – providerCode: PRVPQU databaseName: Environmental Science Database customDbUrl: eissn: 1932-6203 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0053866 issn: 1932-6203 databaseCode: PATMY dateStart: 20061201 isFulltext: true titleUrlDefault: http://search.proquest.com/environmentalscience providerName: ProQuest – providerCode: PRVPQU databaseName: Health & Medical Collection customDbUrl: eissn: 1932-6203 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0053866 issn: 1932-6203 databaseCode: 7X7 dateStart: 20061201 isFulltext: true titleUrlDefault: https://search.proquest.com/healthcomplete providerName: ProQuest – providerCode: PRVPQU databaseName: Materials Science Database customDbUrl: eissn: 1932-6203 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0053866 issn: 1932-6203 databaseCode: KB. dateStart: 20061201 isFulltext: true titleUrlDefault: http://search.proquest.com/materialsscijournals providerName: ProQuest – providerCode: PRVPQU databaseName: Nursing & Allied Health Database customDbUrl: eissn: 1932-6203 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0053866 issn: 1932-6203 databaseCode: 7RV dateStart: 20061201 isFulltext: true titleUrlDefault: https://search.proquest.com/nahs providerName: ProQuest – providerCode: PRVPQU databaseName: ProQuest Central customDbUrl: eissn: 1932-6203 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0053866 issn: 1932-6203 databaseCode: BENPR dateStart: 20061201 isFulltext: true titleUrlDefault: https://www.proquest.com/central providerName: ProQuest – providerCode: PRVPQU databaseName: Public Health Database customDbUrl: eissn: 1932-6203 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0053866 issn: 1932-6203 databaseCode: 8C1 dateStart: 20061201 isFulltext: true titleUrlDefault: https://search.proquest.com/publichealth providerName: ProQuest – providerCode: PRVPQU databaseName: Publicly Available Content Database customDbUrl: eissn: 1932-6203 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0053866 issn: 1932-6203 databaseCode: PIMPY dateStart: 20061201 isFulltext: true titleUrlDefault: http://search.proquest.com/publiccontent providerName: ProQuest – providerCode: PRVATS databaseName: Public Library of Science (PLoS) Journals Open Access customDbUrl: eissn: 1932-6203 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0053866 issn: 1932-6203 databaseCode: FPL dateStart: 20060101 isFulltext: true titleUrlDefault: http://www.plos.org/publications/ providerName: Public Library of Science
link	http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwlV3db9owELdWuoe9bOu-ytZRa5q07SEsiZ3YeYQOtKrAIrohupfIcRKKVAVEoFr_-90FQ6Gj2vZyQvE5wnf2-S6--5mQ9wghhqG0Bb5CDAGK71uB5yZWmrqpVkxluqyQG3REryeHwyC8DRTvnOAz4Xw2Mq1PJ3lat5fFnXtk32W-jylc7bCzsrywdn3flMfd13Nr-ylR-te2uDK9mhS7HM27-ZIbG1D7yf_-9afksXE1aWM5Nw7IgzR_Rg7MYi7oR4M4_ek5yfEn3SzLpOOc9sGG0H56ja5kQuMbiuGq1Unz0fyS6i-9Bu0qRHcYUZUntHxF65fJq83pCu2EmpuAaBdT_9Rspm5ekB_t1veTr5a5iMHSwuFzS8gslnFsSyUDLNsLOI890KSwA9vXXClHZzECF6ba1yzQMrYT8ANgfiRMxJyzl6SSgwwOCVU2YzrNlOepALHhgszjgmsIaxJwhVRWJWyln0gblHK8LOMqKo_eBEQrS-lFKNTICLVKrHWv6RKl4y_8TVT9mhcxtssHoL3ILNkIthAvwGNEmWjuxl6MaIsw8ixRXElHVMkxTpxoWbC6thRRA_E3GbihwPGu5ECcjRwTeUZqURTR6bfBPzCd97eYPhimbALi0MoUT8CYEL9ri_MQ5_Fq2EUEDkjgMMm4_2dT4CECJLiUVXK0mva7e-5q3uh9vG4G64RHTipPJ4si8iV41NJlVfJquYRu1SMRVYu7VSK2FteWTrZb8vFliX_u2pI7gXx9_3DekEflN3jHsVx5RCrz2SJ9Sx7q6_m4mNXInugPkA5FSSVQeeLUyH6z1Qv7tfK7TK00LUDPmnWgXfsMqQhLeg409H5Cj_C0G178BpS1d4A
linkProvider	Public Library of Science
linkToHtml	http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMw1V3db9MwELdGQYIXYHytMKiFQMBDtnw4ifOAUGGbVq0tqGzV3ozjJF2lKSlNO-g_xd_IXeJ0DVTAyx54q-pzFNvnn-_iu98R8gIpxNCVNsBWCMFB8TwjcO3IiGM7VtKRiSoy5IZdv9_np6fBpw3yo8qFwbDKChMLoI4yhd_IdwFHAwvcKea9m3w1sGoU3q5WJTRKtTiKF9_AZcvfdvZgfV_a9sH-8YdDQ1cVMJRvsZnh8yTkYWhyyQPMQQsYC114Ld8MTE8xKS2VhMjCFytPOYHioRnBoQaDjRw_ZMyB514j1wHHLQwh8wfDCvkBOzxPp-c5vrWrtWFnkqXxjlmmpdaOv6JKwPIsaEzOs3ydoftrvObKAXhw53-burvktja1abvcG5tkI07vkU0NZjl9rRm339wnKf6kq2mpdJzSAWAoHcQXaEpHNFxQdNeNbpyOZmdU7fXbtCeR3WJEZRrR4hH733VccUortheqKyHRHoY-yulULh6QkysZ90PSSEEJtgiVpuOoOJGuKwPkxgsSl_lMgVsXgSkokyZxKv0QSrO0Y7GQc1FcPfrgrZWzJ1CrhNaqJjGWvSYlS8lf5N-j6i1lkWO8-CObjoSGLAFHqBvgNSqPFLNDN0S2SRh5EkkmueU3SQsVV5QJu0ukFG3kH3XADAeJ54UE8oykGMg0kvM8F52Pw38Q-jyoCb3SQkkG06GkTh6BMSF_WU1yC_dRNexcXGr_702BiwyYYFI3yXa1ddb3XNe80ru1bAZ0xis3mcbZPBceB4-C206TPCq38OXycGQVY3aT-LXNXVuTeks6Piv4322TMyvgj__8zi1y8_C41xXdTv_oCblV3ElYlmHzbdKYTefxU3JDXczG-fRZAWKUfLnqrf8T4S7b5w
linkToPdf	http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMw1V3db9MwELdGQYgXYHwtMKiFQMBD1nw4ifOAUFlXMa0rUxnT3oLjJF2lKSlNO-i_xl_HXeJkDVTAyx54q-pzlLPvznfx3e8IeYEQYhhK6-ArhBCguK7uO1akx7EVS2GLRBYVcicDbzjkp6f-0Qb5UdXCYFplZRMLQx1lEr-Rd8CO-iaEU8ztJCot4qjXfzf9qmMHKbxprdpplCJyEC-_QfiWv93vwV6_tKz-3vHuB111GNClZ7K57vEk5GFocMF9rEfzGQsdeEXP8A1XMiFMmYSIyBdLV9q-5KERwQEHjEe2FzJmw3OvkeueDVKMVeq7dXoJ2BHXVaV6tmd2lGTsTLM03jHKEtXGUVh0DKjPhdb0PMvXOb2_5m6uHIb9O__zMt4lt5ULTrulzmySjTi9RzaVkcvpa4XE_eY-SfEnXS1XpZOUjsC20lF8gS52RMMlxTBeH8TpeH5GZW_YpYcCUS_GVKQRLR6x913lG6e0QoGhqkMSPcSUSDGbieUD8vlK-H5IWikIxBahwrBtGSfCcYSPmHl-4jCPSQj3InARRaIRu5KVQCr0dmwich4UV5IeRHHl6gUoYYGSMI3o9axpiV7yF_r3KIY1LWKPF39ks3GgTFkAR6vj4_UqjySzQidEFErgPIkEE9z0NNJGIQ7KQt7aggZdxCW1wT0HiucFBeKPpCiCY7HI82D_48k_EH0aNYheKaIkg-WQQhWVAE-Ia9ag3EKdqtjOg0tN-H3IdxAZE1xtjWxXarR-5rrhldntehisNl7FiTTOFnngcog0uGVr5FGpzpfbwxFtjFka8RqK3tiT5kg6OStw4S2DM9Pnj__8zm1yEzQ-GOwPD56QW8VVhWnqFt8mrflsET8lN-TFfJLPnhX2jJIvV635PwGaEeRC
openUrl	ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Gene+Organization+in+Rice+Revealed+by+Full-Length+cDNA+Mapping+and+Gene+Expression+Analysis+through+Microarray&rft.jtitle=PloS+one&rft.au=Satoh%2C+Kouji&rft.au=Doi%2C+Koji&rft.au=Nagata%2C+Toshifumi&rft.au=Kishimoto%2C+Naoki&rft.date=2007-11-28&rft.pub=Public+Library+of+Science&rft.eissn=1932-6203&rft.volume=2&rft.issue=11&rft_id=info:doi/10.1371%2Fjournal.pone.0001235&rft.externalDocID=1950342155
thumbnail_l	http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1932-6203&client=summon
thumbnail_m	http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1932-6203&client=summon
thumbnail_s	http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1932-6203&client=summon