Rapid and sensitive detection of genome contamination at scale with FCS-GX

Assembled genome sequences are being generated at an exponential rate. Here we present FCS-GX, part of NCBI’s Foreign Contamination Screen (FCS) tool suite, optimized to identify and remove contaminant sequences in new genomes. FCS-GX screens most genomes in 0.1–10 min. Testing FCS-GX on artificiall...

Celý popis

Uloženo v:

Podrobná bibliografie
Vydáno v:	Genome Biology Ročník 25; číslo 1; s. 60
Hlavní autoři:	Astashyn, Alexander, Tvedte, Eric S., Sweeney, Deacon, Sapojnikov, Victor, Bouk, Nathan, Joukov, Victor, Mozes, Eyal, Strope, Pooja K., Sylla, Pape M., Wagner, Lukas, Bidwell, Shelby L., Brown, Larissa C., Clark, Karen, Davis, Emily W., Smith-White, Brian, Hlavina, Wratko, Pruitt, Kim D., Schneider, Valerie A., Murphy, Terence D.
Médium:	Journal Article
Jazyk:	angličtina
Vydáno:	London BioMed Central 26.02.2024 Springer Nature B.V BMC
Témata:	Animal Genetics and Genomics Archives & records Automation Bioinformatics Biomedical and Life Sciences Contaminants Contamination Databases, Nucleic Acid Eukaryotes Evolutionary Biology Fungi GenBank Genome Genome assembly Genome contamination Genome quality Genomes Genomics Human Genetics Life Sciences Method Microbial Genetics and Genomics nucleotide sequences Organisms Plant Genetics and Genomics Prokaryotes rapid methods RefSeq screening sequence analysis Software species Taxonomy RefSeq Genome quality Software Genome assembly Genome contamination GenBank
ISSN:	1474-760X, 1474-7596, 1474-760X
On-line přístup:	Získat plný text
Tagy:	Přidat tag Žádné tagy, Buďte první, kdo vytvoří štítek k tomuto záznamu!

Buďte první, kdo okomentuje tento záznam!