Transcriptome assembly from long-read RNA-seq alignments with StringTie2

RNA sequencing using the latest single-molecule sequencing instruments produces reads that are thousands of nucleotides long. The ability to assemble these long reads can greatly improve the sensitivity of long-read analyses. Here we present StringTie2, a reference-guided transcriptome assembler tha...

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Bibliographic Details
Published in:	Genome Biology Vol. 20; no. 1; p. 278
Main Authors:	Kovaka, Sam, Zimin, Aleksey V., Pertea, Geo M., Razaghi, Roham, Salzberg, Steven L., Pertea, Mihaela
Format:	Journal Article
Language:	English
Published:	London BioMed Central 16.12.2019 Springer Nature B.V BMC
Subjects:	Accuracy Animal Genetics and Genomics Animals Annotations Arabidopsis Bioinformatics Biomedical and Life Sciences Evolutionary Biology Gene expression Genes Genetic Techniques genome Genomes Genomics - methods Human Genetics Humans Life Sciences Long-read sequencing Method Microbial Genetics and Genomics Nucleotides Plant Genetics and Genomics Proteins Ribonucleic acid RNA RNA-seq sequence analysis Sequence Analysis, RNA Software Transcriptome Transcriptome assembly Zea mays Long-read sequencing Transcriptome assembly RNA-seq Gene expression
ISSN:	1474-760X, 1474-7596, 1474-760X
Online Access:	Get full text
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