LDpop: an interactive online tool to calculate and visualize geographic LD patterns

Background Linkage disequilibrium (LD)—the non-random association of alleles at different loci—defines population-specific haplotypes which vary by genomic ancestry. Assessment of allelic frequencies and LD patterns from a variety of ancestral populations enables researchers to better understand pop...

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Bibliographic Details
Published in:	BMC bioinformatics Vol. 21; no. 1; pp. 14 - 4
Main Authors:	Alexander, T. A., Machiela, M. J.
Format:	Journal Article
Language:	English
Published:	London BioMed Central 10.01.2020 BioMed Central Ltd Springer Nature B.V BMC
Subjects:	1000 Genomes Project Algorithms Alleles Bioinformatics Biomedical and Life Sciences Cancer Computational Biology/Bioinformatics Computer Appl. in Life Sciences Data visualization Diseases Gene Frequency Gene mapping Genetic research Genome-wide association Genome-Wide Association Study Genomes Genomics Genomics - methods Geographical visualization Geography Haplotypes Humans Internet Life Sciences Linkage Disequilibrium Mapping Microarrays Operating systems Polymorphism Polymorphism, Single Nucleotide Population Population (statistical) Population genetics Researchers Single nucleotide polymorphisms Single-nucleotide polymorphism Software Statistics User-Computer Interface Visualization Visualization (Computer) Web site management software Webs United States > US Genome-wide association 1000 Genomes Project Linkage disequilibrium Geographical visualization
ISSN:	1471-2105, 1471-2105
Online Access:	Get full text
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