DIDA: Distributed Indexing Dispatched Alignment

One essential application in bioinformatics that is affected by the high-throughput sequencing data deluge is the sequence alignment problem, where nucleotide or amino acid sequences are queried against targets to find regions of close similarity. When queries are too many and/or targets are too lar...

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Bibliographic Details
Published in:	PloS one Vol. 10; no. 4; p. e0126409
Main Authors:	Mohamadi, Hamid, Vandervalk, Benjamin P, Raymond, Anthony, Jackman, Shaun D, Chu, Justin, Breshears, Clay P, Birol, Inanc
Format:	Journal Article
Language:	English
Published:	United States Public Library of Science 29.04.2015 Public Library of Science (PLoS)
Subjects:	Alignment Amino acid sequence Amino acids Assembly Bioinformatics Cancer Computational biology Computational Biology - methods Computer programs Data processing Databases, Genetic DNA sequencing Genomes Humans Indexing Indexing (Content analysis) Methods Next-generation sequencing Nucleotide sequence Preprocessing Queries Sequence Alignment - methods Software Workflow Canada United States
ISSN:	1932-6203, 1932-6203
Online Access:	Get full text
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