DIDA: Distributed Indexing Dispatched Alignment
One essential application in bioinformatics that is affected by the high-throughput sequencing data deluge is the sequence alignment problem, where nucleotide or amino acid sequences are queried against targets to find regions of close similarity. When queries are too many and/or targets are too lar...
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| Veröffentlicht in: | PloS one Jg. 10; H. 4; S. e0126409 |
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29.04.2015
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| Abstract | One essential application in bioinformatics that is affected by the high-throughput sequencing data deluge is the sequence alignment problem, where nucleotide or amino acid sequences are queried against targets to find regions of close similarity. When queries are too many and/or targets are too large, the alignment process becomes computationally challenging. This is usually addressed by preprocessing techniques, where the queries and/or targets are indexed for easy access while searching for matches. When the target is static, such as in an established reference genome, the cost of indexing is amortized by reusing the generated index. However, when the targets are non-static, such as contigs in the intermediate steps of a de novo assembly process, a new index must be computed for each run. To address such scalability problems, we present DIDA, a novel framework that distributes the indexing and alignment tasks into smaller subtasks over a cluster of compute nodes. It provides a workflow beyond the common practice of embarrassingly parallel implementations. DIDA is a cost-effective, scalable and modular framework for the sequence alignment problem in terms of memory usage and runtime. It can be employed in large-scale alignments to draft genomes and intermediate stages of de novo assembly runs. The DIDA source code, sample files and user manual are available through http://www.bcgsc.ca/platform/bioinfo/software/dida. The software is released under the British Columbia Cancer Agency License (BCCA), and is free for academic use. |
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| AbstractList | One essential application in bioinformatics that is affected by the high-throughput sequencing data deluge is the sequence alignment problem, where nucleotide or amino acid sequences are queried against targets to find regions of close similarity. When queries are too many and/or targets are too large, the alignment process becomes computationally challenging. This is usually addressed by preprocessing techniques, where the queries and/or targets are indexed for easy access while searching for matches. When the target is static, such as in an established reference genome, the cost of indexing is amortized by reusing the generated index. However, when the targets are non-static, such as contigs in the intermediate steps of a de novo assembly process, a new index must be computed for each run. To address such scalability problems, we present DIDA, a novel framework that distributes the indexing and alignment tasks into smaller subtasks over a cluster of compute nodes. It provides a workflow beyond the common practice of embarrassingly parallel implementations. DIDA is a cost-effective, scalable and modular framework for the sequence alignment problem in terms of memory usage and runtime. It can be employed in large-scale alignments to draft genomes and intermediate stages of de novo assembly runs. The DIDA source code, sample files and user manual are available through http://www.bcgsc.ca/platform/bioinfo/software/dida. The software is released under the British Columbia Cancer Agency License (BCCA), and is free for academic use. One essential application in bioinformatics that is affected by the high-throughput sequencing data deluge is the sequence alignment problem, where nucleotide or amino acid sequences are queried against targets to find regions of close similarity. When queries are too many and/or targets are too large, the alignment process becomes computationally challenging. This is usually addressed by preprocessing techniques, where the queries and/or targets are indexed for easy access while searching for matches. When the target is static, such as in an established reference genome, the cost of indexing is amortized by reusing the generated index. However, when the targets are non-static, such as contigs in the intermediate steps of a de novo assembly process, a new index must be computed for each run. To address such scalability problems, we present DIDA, a novel framework that distributes the indexing and alignment tasks into smaller subtasks over a cluster of compute nodes. It provides a workflow beyond the common practice of embarrassingly parallel implementations. DIDA is a cost-effective, scalable and modular framework for the sequence alignment problem in terms of memory usage and runtime. It can be employed in large-scale alignments to draft genomes and intermediate stages of de novo assembly runs. The DIDA source code, sample files and user manual are available through |
| Audience | Academic |
| Author | Vandervalk, Benjamin P Breshears, Clay P Mohamadi, Hamid Jackman, Shaun D Chu, Justin Birol, Inanc Raymond, Anthony |
| AuthorAffiliation | Oak Ridge National Lab, UNITED STATES 3 Department of Medical Genetics, University of British Columbia, Vancouver, BC, Canada 1 Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada 5 Intel Health and Life Sciences, Intel Corporation, Hillsboro, OR, US 2 Department of Bioinformatics, University of British Columbia, Vancouver, BC, Canada 4 School of Computing Science, Simon Fraser University, Burnaby, BC, Canada |
| AuthorAffiliation_xml | – name: 4 School of Computing Science, Simon Fraser University, Burnaby, BC, Canada – name: 3 Department of Medical Genetics, University of British Columbia, Vancouver, BC, Canada – name: 5 Intel Health and Life Sciences, Intel Corporation, Hillsboro, OR, US – name: 1 Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada – name: Oak Ridge National Lab, UNITED STATES – name: 2 Department of Bioinformatics, University of British Columbia, Vancouver, BC, Canada |
| Author_xml | – sequence: 1 givenname: Hamid surname: Mohamadi fullname: Mohamadi, Hamid – sequence: 2 givenname: Benjamin P surname: Vandervalk fullname: Vandervalk, Benjamin P – sequence: 3 givenname: Anthony surname: Raymond fullname: Raymond, Anthony – sequence: 4 givenname: Shaun D surname: Jackman fullname: Jackman, Shaun D – sequence: 5 givenname: Justin surname: Chu fullname: Chu, Justin – sequence: 6 givenname: Clay P surname: Breshears fullname: Breshears, Clay P – sequence: 7 givenname: Inanc surname: Birol fullname: Birol, Inanc |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/25923767$$D View this record in MEDLINE/PubMed |
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| CitedBy_id | crossref_primary_10_1186_s13059_021_02443_7 crossref_primary_10_1016_j_ijbiomac_2021_03_058 crossref_primary_10_1038_s41598_019_40739_8 crossref_primary_10_1111_tpj_12886 crossref_primary_10_1371_journal_pone_0268514 crossref_primary_10_1371_journal_pone_0229358 crossref_primary_10_1109_ACCESS_2021_3065944 crossref_primary_10_3390_ijms25179415 |
| Cites_doi | 10.1186/gb-2009-10-3-r25 10.1016/0022-2836(70)90057-4 10.1109/SFCS.2000.892127 10.1101/gr.078212.108 10.1093/bioinformatics/btu558 10.1101/gr.089532.108 10.1080/15427951.2004.10129096 10.1186/1471-2105-12-333 10.1371/journal.pone.0007767 10.1093/bioinformatics/btp336 10.1093/bioinformatics/18.3.440 10.1101/gr.074492.107 10.1186/1748-7188-8-22 10.1371/journal.pcbi.1000502 10.1093/bioinformatics/btn032 10.1093/bioinformatics/btp533 10.1093/bioinformatics/bti1114 10.1101/gr.126953.111 10.1038/nmeth0810-576 10.1093/bioinformatics/btq057 10.1101/gr.7337908 10.1145/362686.362692 10.1186/gb-2004-5-2-r12 10.1137/0222058 10.1016/S0022-2836(05)80360-2 10.1186/1748-7188-9-2 10.1016/0885-064X(85)90022-6 10.1093/bioinformatics/btp236 10.1038/nature08696 10.1145/1242471.1242472 10.1007/s00453-011-9535-0 10.1038/nmeth.1923 10.1093/bioinformatics/btp486 10.1038/nmeth.2221 10.1093/bioinformatics/btq230 10.1093/bioinformatics/btt178 10.1093/bioinformatics/btp352 |
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| Copyright | COPYRIGHT 2015 Public Library of Science 2015 Mohamadi et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. 2015 Mohamadi et al 2015 Mohamadi et al |
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| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 content type line 23 Competing Interests: Clay P. Breshears is employed by Intel Corporation, Health and Life Sciences group. Intel had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. This does not alter the authors’ adherence to PLOS ONE policies on sharing data and materials. Conceived and designed the experiments: HM BV AR IB. Performed the experiments: HM BV AR. Analyzed the data: HM BV AR. Contributed reagents/materials/analysis tools: HM BV AR SJ JC CB IB. Wrote the paper: HM BV AR SJ JC CB IB. Designed the parallel and distributed algorithm: HM IB. Developed, implemented, and improved the software tool: HM BV AR JC CB. Modified the tool, performed the new experiments for revised version, and addressed the reviewers’ comments: HM BV IB. |
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| References | JT Simpson (ref24) 2009; 19 ref36 B Langmead (ref16) 2009; 10 H Li (ref9) 2008; 18 S Kurtz (ref2) 2004; 5 JT Simpson (ref23) 2012; 22 EW Myers (ref22) 2005; 21 ref1 M Abouelhoda (ref3) 2002 U Manber (ref37) 1993; 22 P Melsted (ref29) 2011; 12 R Li (ref19) 2009; 25 TW Lam (ref14) 2008; 24 F Hach (ref7) 2010; 7 TD Wu (ref13) 2010; 26 J Chu (ref32) 2014; 30 S Hoffmann (ref4) 2009; 5 AD Smith (ref12) 2009; 25 S Marco-Sola (ref20) 2012; 9 DS Johnson (ref34) 1985 SF Altschul (ref5) 1990; 215 Y Chen (ref6) 2009; 25 H Li (ref17) 2009; 25 P Ferragina (ref39) 2012; 63 R Chikhi (ref28) 2013; 8 B Langmead (ref15) 2012; 9 H Stranneheim (ref31) 2010; 26 VV Vazirani (ref35) 2001 SB Needleman (ref42) 1970; 48 N Homer (ref8) 2009; 4 B Ma (ref10) 2002; 18 ref41 J Butler (ref21) 2008; 18 DR Zerbino (ref25) 2008; 18 A Broder (ref33) 2004; 1 SJ Puglisi (ref38) 2007; 39 BH Bloom (ref27) 1970; 13 K Salikhov (ref30) 2014; 9 I Birol (ref26) 2013; 29 R Li (ref18) 2010; 463 ref40 MC Schatz (ref11) 2009; 25 20676076 - Nat Methods. 2010 Aug;7(8):576-7 2231712 - J Mol Biol. 1990 Oct 5;215(3):403-10 23103880 - Nat Methods. 2012 Dec;9(12):1185-8 11934743 - Bioinformatics. 2002 Mar;18(3):440-5 24040893 - Algorithms Mol Biol. 2013 Sep 16;8(1):22 18340039 - Genome Res. 2008 May;18(5):810-20 20472541 - Bioinformatics. 2010 Jul 1;26(13):1595-600 19736251 - Bioinformatics. 2009 Nov 1;25(21):2841-2 16204131 - Bioinformatics. 2005 Sep 1;21 Suppl 2:ii79-85 5420325 - J Mol Biol. 1970 Mar;48(3):443-53 20147302 - Bioinformatics. 2010 Apr 1;26(7):873-81 19907642 - PLoS One. 2009;4(11):e7767 18227115 - Bioinformatics. 2008 Mar 15;24(6):791-7 19750212 - PLoS Comput Biol. 2009 Sep;5(9):e1000502 25143290 - Bioinformatics. 2014 Dec 1;30(23):3402-4 19251739 - Genome Res. 2009 Jun;19(6):1117-23 19357099 - Bioinformatics. 2009 Jun 1;25(11):1363-9 19261174 - Genome Biol. 2009;10(3):R25 19497933 - Bioinformatics. 2009 Aug 1;25(15):1966-7 19675096 - Bioinformatics. 2009 Oct 1;25(19):2514-21 18714091 - Genome Res. 2008 Nov;18(11):1851-8 24565280 - Algorithms Mol Biol. 2014 Feb 24;9(1):2 19505943 - Bioinformatics. 2009 Aug 15;25(16):2078-9 23698863 - Bioinformatics. 2013 Jun 15;29(12):1492-7 22388286 - Nat Methods. 2012 Apr;9(4):357-9 20010809 - Nature. 2010 Jan 21;463(7279):311-7 18349386 - Genome Res. 2008 May;18(5):821-9 22156294 - Genome Res. 2012 Mar;22(3):549-56 21831268 - BMC Bioinformatics. 2011;12:333 14759262 - Genome Biol. 2004;5(2):R12 |
| References_xml | – ident: ref1 – volume: 10 start-page: R25 year: 2009 ident: ref16 article-title: Ultrafast and memory-efficient alignment of short dna sequences to the human genome publication-title: Genome Biology doi: 10.1186/gb-2009-10-3-r25 – volume: 48 start-page: 443 year: 1970 ident: ref42 article-title: A general method applicable to the search for similarities in the amino acid sequence of two proteins publication-title: Journal of Molecular Biology doi: 10.1016/0022-2836(70)90057-4 – ident: ref40 doi: 10.1109/SFCS.2000.892127 – volume: 18 start-page: 1851 year: 2008 ident: ref9 article-title: Mapping short dna sequencing reads and calling variants using mapping quality scores publication-title: Genome Research doi: 10.1101/gr.078212.108 – volume: 30 start-page: 3402 year: 2014 ident: ref32 article-title: Biobloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters publication-title: Bioinformatics doi: 10.1093/bioinformatics/btu558 – volume: 19 start-page: 1117 year: 2009 ident: ref24 article-title: Abyss: A parallel assembler for short read sequence data publication-title: Genome Research doi: 10.1101/gr.089532.108 – volume: 1 start-page: 485 year: 2004 ident: ref33 article-title: Network Applications of Bloom Filters: A Survey publication-title: Internet Mathematics doi: 10.1080/15427951.2004.10129096 – ident: ref41 – volume: 12 start-page: 333 year: 2011 ident: ref29 article-title: Efficient counting of k-mers in dna sequences using a bloom filter publication-title: BMC Bioinformatics doi: 10.1186/1471-2105-12-333 – start-page: 449 year: 2002 ident: ref3 article-title: The enhanced suffix array and its applications to genome analysis – volume: 4 start-page: e7767 year: 2009 ident: ref8 article-title: Bfast: An alignment tool for large scale genome resequencing publication-title: PLoS ONE doi: 10.1371/journal.pone.0007767 – volume: 25 start-page: 1966 year: 2009 ident: ref19 article-title: Soap2: an improved ultrafast tool for short read alignment publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp336 – volume: 18 start-page: 440 year: 2002 ident: ref10 article-title: Patternhunter: faster and more sensitive homology search publication-title: Bioinformatics doi: 10.1093/bioinformatics/18.3.440 – volume: 18 start-page: 821 year: 2008 ident: ref25 article-title: Velvet: Algorithms for de novo short read assembly using de bruijn graphs publication-title: Genome Research doi: 10.1101/gr.074492.107 – volume: 8 start-page: 22 year: 2013 ident: ref28 article-title: Space-efficient and exact de bruijn graph representation based on a bloom filter publication-title: Algorithms for Molecular Biology doi: 10.1186/1748-7188-8-22 – volume: 5 start-page: e1000502 year: 2009 ident: ref4 article-title: Fast mapping of short sequences with mismatches, insertions and deletions using index structures publication-title: PLoS Comput Biol doi: 10.1371/journal.pcbi.1000502 – year: 2001 ident: ref35 article-title: Approximation Algorithms – volume: 24 start-page: 791 year: 2008 ident: ref14 article-title: Compressed indexing and local alignment of dna publication-title: Bioinformatics doi: 10.1093/bioinformatics/btn032 – volume: 25 start-page: 2841 year: 2009 ident: ref12 article-title: Updates to the rmap short-read mapping software publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp533 – ident: ref36 – volume: 21 start-page: ii79 year: 2005 ident: ref22 article-title: The fragment assembly string graph publication-title: Bioinformatics doi: 10.1093/bioinformatics/bti1114 – volume: 22 start-page: 549 year: 2012 ident: ref23 article-title: Efficient de novo assembly of large genomes using compressed data structures publication-title: Genome Research doi: 10.1101/gr.126953.111 – volume: 7 start-page: 576 year: 2010 ident: ref7 article-title: mrsfast: a cache-oblivious algorithm for short-read mapping publication-title: Nat Meth doi: 10.1038/nmeth0810-576 – volume: 26 start-page: 873 year: 2010 ident: ref13 article-title: Fast and snp-tolerant detection of complex variants and splicing in short reads publication-title: Bioinformatics doi: 10.1093/bioinformatics/btq057 – volume: 18 start-page: 810 year: 2008 ident: ref21 article-title: Allpaths: De novo assembly of whole-genome shotgun microreads publication-title: Genome Research doi: 10.1101/gr.7337908 – volume: 13 start-page: 422 year: 1970 ident: ref27 article-title: Space/time trade-offs in hash coding with allowable errors publication-title: Commun ACM doi: 10.1145/362686.362692 – volume: 5 start-page: R12 year: 2004 ident: ref2 article-title: Versatile and open software for comparing large genomes publication-title: Genome Biology doi: 10.1186/gb-2004-5-2-r12 – volume: 22 start-page: 935 year: 1993 ident: ref37 article-title: Suffix arrays: A new method for on-line string searches publication-title: SIAM Journal on Computing doi: 10.1137/0222058 – volume: 215 start-page: 403 year: 1990 ident: ref5 article-title: Basic local alignment search tool publication-title: Journal of Molecular Biology doi: 10.1016/S0022-2836(05)80360-2 – volume: 9 start-page: 2 year: 2014 ident: ref30 article-title: Using cascading bloom filters to improve the memory usage for de brujin graphs publication-title: Algorithms for Molecular Biology doi: 10.1186/1748-7188-9-2 – start-page: 65 year: 1985 ident: ref34 article-title: A 71/60 theorem for bin packing publication-title: J Complexity doi: 10.1016/0885-064X(85)90022-6 – volume: 25 start-page: 1363 year: 2009 ident: ref11 article-title: Cloudburst: highly sensitive read mapping with mapreduce publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp236 – volume: 463 start-page: 311 year: 2010 ident: ref18 article-title: The sequence and de novo assembly of the giant panda genome publication-title: Nature doi: 10.1038/nature08696 – volume: 39 year: 2007 ident: ref38 article-title: A taxonomy of suffix array construction algorithms publication-title: ACM Comput Surv doi: 10.1145/1242471.1242472 – volume: 63 start-page: 707 year: 2012 ident: ref39 article-title: Lightweight data indexing and compression in external memory publication-title: Algorithmica doi: 10.1007/s00453-011-9535-0 – volume: 9 start-page: 357 year: 2012 ident: ref15 article-title: Fast gapped-read alignment with bowtie 2 publication-title: Nat Meth doi: 10.1038/nmeth.1923 – volume: 25 start-page: 2514 year: 2009 ident: ref6 article-title: Perm: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp486 – volume: 9 start-page: 1185 year: 2012 ident: ref20 article-title: The gem mapper: fast, accurate and versatile alignment by filtration publication-title: Nat Meth doi: 10.1038/nmeth.2221 – volume: 26 start-page: 1595 year: 2010 ident: ref31 article-title: Classification of dna sequences using bloom filters publication-title: Bioinformatics doi: 10.1093/bioinformatics/btq230 – volume: 29 start-page: 1492 year: 2013 ident: ref26 article-title: Assembling the 20 gb white spruce (picea glauca) genome from whole-genome shotgun sequencing data publication-title: Bioinformatics doi: 10.1093/bioinformatics/btt178 – volume: 25 start-page: 2078 year: 2009 ident: ref17 article-title: The sequence alignment/map format and samtools publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp352 – reference: 19251739 - Genome Res. 2009 Jun;19(6):1117-23 – reference: 21831268 - BMC Bioinformatics. 2011;12:333 – reference: 16204131 - Bioinformatics. 2005 Sep 1;21 Suppl 2:ii79-85 – reference: 19736251 - Bioinformatics. 2009 Nov 1;25(21):2841-2 – reference: 22156294 - Genome Res. 2012 Mar;22(3):549-56 – reference: 18340039 - Genome Res. 2008 May;18(5):810-20 – reference: 18349386 - Genome Res. 2008 May;18(5):821-9 – reference: 20147302 - Bioinformatics. 2010 Apr 1;26(7):873-81 – reference: 5420325 - J Mol Biol. 1970 Mar;48(3):443-53 – reference: 18714091 - Genome Res. 2008 Nov;18(11):1851-8 – reference: 19907642 - PLoS One. 2009;4(11):e7767 – reference: 19505943 - Bioinformatics. 2009 Aug 15;25(16):2078-9 – reference: 18227115 - Bioinformatics. 2008 Mar 15;24(6):791-7 – reference: 19675096 - Bioinformatics. 2009 Oct 1;25(19):2514-21 – reference: 20010809 - Nature. 2010 Jan 21;463(7279):311-7 – reference: 19497933 - Bioinformatics. 2009 Aug 1;25(15):1966-7 – reference: 24040893 - Algorithms Mol Biol. 2013 Sep 16;8(1):22 – reference: 23698863 - Bioinformatics. 2013 Jun 15;29(12):1492-7 – reference: 20676076 - Nat Methods. 2010 Aug;7(8):576-7 – reference: 25143290 - Bioinformatics. 2014 Dec 1;30(23):3402-4 – reference: 2231712 - J Mol Biol. 1990 Oct 5;215(3):403-10 – reference: 24565280 - Algorithms Mol Biol. 2014 Feb 24;9(1):2 – reference: 19750212 - PLoS Comput Biol. 2009 Sep;5(9):e1000502 – reference: 19261174 - Genome Biol. 2009;10(3):R25 – reference: 19357099 - Bioinformatics. 2009 Jun 1;25(11):1363-9 – reference: 20472541 - Bioinformatics. 2010 Jul 1;26(13):1595-600 – reference: 14759262 - Genome Biol. 2004;5(2):R12 – reference: 22388286 - Nat Methods. 2012 Apr;9(4):357-9 – reference: 23103880 - Nat Methods. 2012 Dec;9(12):1185-8 – reference: 11934743 - Bioinformatics. 2002 Mar;18(3):440-5 |
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