Genetic variation and phylogeographic structure of Spodoptera exigua in western China based on mitochondrial DNA and microsatellite markers
The beet armyworm, Spodoptera exigua, is a significant agricultural pest of numerous crops and has caused serious economic losses in China. To effectively control this pest, we analyzed its genetic variation, population genetic structure and demographic history. We used mitochondrial DNA (mtDNA) fra...
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| Abstract | The beet armyworm, Spodoptera exigua, is a significant agricultural pest of numerous crops and has caused serious economic losses in China. To effectively control this pest, we analyzed its genetic variation, population genetic structure and demographic history. We used mitochondrial DNA (mtDNA) fragments of the cytochrome oxidase subunit I (COI) and eight nuclear microsatellite loci to investigate genetic diversity and population genetic structure of S. exigua populations at 14 sampling sites in western China. Both mtDNA and microsatellite data indicated low levels of genetic diversity among all populations. A moderate genetic differentiation among some S. exigua populations was detected. Neighbor-joining dendrograms, STRUCTURE, and principal coordinate analysis (PCoA) revealed two genetically distinct groups: the KEL group and the remaining population group. Isolation by distance (IBD) results showed a weak significant correlation between geographic distance and genetic differentiation. Haplotype networks, neutrality testing, and mismatch distribution analysis indicated that the beet armyworm experienced a recent rapid expansion without a recent genetic bottleneck in western China. Thus, the results of this population genetic study can help with the development of strategies for managing this highly migratory pest. |
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| AbstractList | The beet armyworm, Spodoptera exigua, is a significant agricultural pest of numerous crops and has caused serious economic losses in China. To effectively control this pest, we analyzed its genetic variation, population genetic structure and demographic history. We used mitochondrial DNA (mtDNA) fragments of the cytochrome oxidase subunit I (COI) and eight nuclear microsatellite loci to investigate genetic diversity and population genetic structure of S. exigua populations at 14 sampling sites in western China. Both mtDNA and microsatellite data indicated low levels of genetic diversity among all populations. A moderate genetic differentiation among some S. exigua populations was detected. Neighbor-joining dendrograms, STRUCTURE, and principal coordinate analysis (PCoA) revealed two genetically distinct groups: the KEL group and the remaining population group. Isolation by distance (IBD) results showed a weak significant correlation between geographic distance and genetic differentiation. Haplotype networks, neutrality testing, and mismatch distribution analysis indicated that the beet armyworm experienced a recent rapid expansion without a recent genetic bottleneck in western China. Thus, the results of this population genetic study can help with the development of strategies for managing this highly migratory pest. The beet armyworm, Spodoptera exigua, is a significant agricultural pest of numerous crops and has caused serious economic losses in China. To effectively control this pest, we analyzed its genetic variation, population genetic structure and demographic history. We used mitochondrial DNA (mtDNA) fragments of the cytochrome oxidase subunit I (COI) and eight nuclear microsatellite loci to investigate genetic diversity and population genetic structure of S. exigua populations at 14 sampling sites in western China. Both mtDNA and microsatellite data indicated low levels of genetic diversity among all populations. A moderate genetic differentiation among some S. exigua populations was detected. Neighbor-joining dendrograms, STRUCTURE, and principal coordinate analysis (PCoA) revealed two genetically distinct groups: the KEL group and the remaining population group. Isolation by distance (IBD) results showed a weak significant correlation between geographic distance and genetic differentiation. Haplotype networks, neutrality testing, and mismatch distribution analysis indicated that the beet armyworm experienced a recent rapid expansion without a recent genetic bottleneck in western China. Thus, the results of this population genetic study can help with the development of strategies for managing this highly migratory pest.The beet armyworm, Spodoptera exigua, is a significant agricultural pest of numerous crops and has caused serious economic losses in China. To effectively control this pest, we analyzed its genetic variation, population genetic structure and demographic history. We used mitochondrial DNA (mtDNA) fragments of the cytochrome oxidase subunit I (COI) and eight nuclear microsatellite loci to investigate genetic diversity and population genetic structure of S. exigua populations at 14 sampling sites in western China. Both mtDNA and microsatellite data indicated low levels of genetic diversity among all populations. A moderate genetic differentiation among some S. exigua populations was detected. Neighbor-joining dendrograms, STRUCTURE, and principal coordinate analysis (PCoA) revealed two genetically distinct groups: the KEL group and the remaining population group. Isolation by distance (IBD) results showed a weak significant correlation between geographic distance and genetic differentiation. Haplotype networks, neutrality testing, and mismatch distribution analysis indicated that the beet armyworm experienced a recent rapid expansion without a recent genetic bottleneck in western China. Thus, the results of this population genetic study can help with the development of strategies for managing this highly migratory pest. |
| Audience | Academic |
| Author | Chen, Chen Wang, Xiao-Qi Wang, Xing-Ya Wang, Ming-Ming |
| AuthorAffiliation | College of Plant Protection, Shenyang Agricultural University, Shenyang, Liaoning, China CMAVE, USDA-ARS, UNITED STATES |
| AuthorAffiliation_xml | – name: CMAVE, USDA-ARS, UNITED STATES – name: College of Plant Protection, Shenyang Agricultural University, Shenyang, Liaoning, China |
| Author_xml | – sequence: 1 givenname: Xing-Ya orcidid: 0000-0001-6850-3809 surname: Wang fullname: Wang, Xing-Ya – sequence: 2 givenname: Ming-Ming surname: Wang fullname: Wang, Ming-Ming – sequence: 3 givenname: Chen surname: Chen fullname: Chen, Chen – sequence: 4 givenname: Xiao-Qi surname: Wang fullname: Wang, Xiao-Qi |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/32407374$$D View this record in MEDLINE/PubMed |
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| CitedBy_id | crossref_primary_10_1002_ps_6670 crossref_primary_10_1093_jee_toac103 crossref_primary_10_1007_s12600_023_01099_2 crossref_primary_10_1016_j_aspen_2021_101863 crossref_primary_10_3389_fevo_2023_1062857 crossref_primary_10_1007_s12355_024_01458_1 crossref_primary_10_7717_peerj_19243 |
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| SubjectTerms | Agricultural management Agricultural pests Agronomy Analysis Armyworms Biodiversity Biology and Life Sciences Control Cytochrome Cytochrome oxidase Cytochromes Deoxyribonucleic acid Development strategies Differentiation Distribution DNA DNA polymerase Earth Sciences Ecology and Environmental Sciences Economic analysis Economic impact Genetic aspects Genetic diversity Genetic markers Genetic structure Genetic variation Haplotypes History Isolation Microsatellites Microsatellites (Genetics) Mitochondrial DNA Oxidases People and Places Pest control Pests Polymorphism Population genetics Population studies Populations Spodoptera exigua Structure (Literature) Studies |
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| Title | Genetic variation and phylogeographic structure of Spodoptera exigua in western China based on mitochondrial DNA and microsatellite markers |
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