Potential role of weather, soil and plant microbial communities in rapid decline of apple trees
An unusual decline and collapse of young established trees known as "rapid apple decline" (RAD) has become a major concern for apple growers, particularly in the northeastern United States. This decline is characterized by stunted growth, pale yellow to reddish leaves, and tree collapse wi...
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| Vydáno v: | PloS one Ročník 14; číslo 3; s. e0213293 |
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| Hlavní autoři: | , , , |
| Médium: | Journal Article |
| Jazyk: | angličtina |
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United States
Public Library of Science
06.03.2019
Public Library of Science (PLoS) |
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| ISSN: | 1932-6203, 1932-6203 |
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| Abstract | An unusual decline and collapse of young established trees known as "rapid apple decline" (RAD) has become a major concern for apple growers, particularly in the northeastern United States. This decline is characterized by stunted growth, pale yellow to reddish leaves, and tree collapse within weeks after onset of symptoms. We studied declining apple trees to identify potential involvement of abiotic and biotic stresses. We used 16S and ITS to profile bacterial and fungal communities in the soil, rhizosphere, roots, and shoots and tested for the presence of six viruses in scions and rootstocks of symptomatic and asymptomatic trees. The viruses detected were not associated with RAD symptoms. Bacterial and fungal populations were highly variable in plant tissue, soil and rhizosphere samples, with bacteroidetes, firmicutes, proteobacteria, acidobacteria, and actinobacteria the predominant bacterial classes in various samples. 'Alphaproteobacteria-rickettsiales', a bacterial class usually reduced in water-limiting soils, had significantly low abundance in root samples of symptomatic trees. Basidiomycota and Ascomycota fungal classes were the most common fungal classes observed, but neither showed differential enrichment between symptomatic and asymptomatic trees. Analyzing weather data showed an extremely cold winter followed by drought in 2015-2016, which likely weakened the trees to make them more susceptible to varied stresses. In addition, similar physical and nutritional soil composition from symptomatic and asymptomatic trees rules out the role of nutritional stress in RAD. Necrotic lesions and wood decay symptoms dispersing from bark or vascular cambium towards the heartwood were observed primarily below the graft union of declining apple trees, suggesting that the rootstock is the originating point of RAD. We speculate that differences in abiotic factors such as moisture levels in declining roots in combination with extreme weather profiles might cause RAD but cannot clearly rule out the involvement of other factors. |
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| AbstractList | An unusual decline and collapse of young established trees known as "rapid apple decline" (RAD) has become a major concern for apple growers, particularly in the northeastern United States. This decline is characterized by stunted growth, pale yellow to reddish leaves, and tree collapse within weeks after onset of symptoms. We studied declining apple trees to identify potential involvement of abiotic and biotic stresses. We used 16S and ITS to profile bacterial and fungal communities in the soil, rhizosphere, roots, and shoots and tested for the presence of six viruses in scions and rootstocks of symptomatic and asymptomatic trees. The viruses detected were not associated with RAD symptoms. Bacterial and fungal populations were highly variable in plant tissue, soil and rhizosphere samples, with bacteroidetes, firmicutes, proteobacteria, acidobacteria, and actinobacteria the predominant bacterial classes in various samples. 'Alphaproteobacteria-rickettsiales', a bacterial class usually reduced in water-limiting soils, had significantly low abundance in root samples of symptomatic trees. Basidiomycota and Ascomycota fungal classes were the most common fungal classes observed, but neither showed differential enrichment between symptomatic and asymptomatic trees. Analyzing weather data showed an extremely cold winter followed by drought in 2015-2016, which likely weakened the trees to make them more susceptible to varied stresses. In addition, similar physical and nutritional soil composition from symptomatic and asymptomatic trees rules out the role of nutritional stress in RAD. Necrotic lesions and wood decay symptoms dispersing from bark or vascular cambium towards the heartwood were observed primarily below the graft union of declining apple trees, suggesting that the rootstock is the originating point of RAD. We speculate that differences in abiotic factors such as moisture levels in declining roots in combination with extreme weather profiles might cause RAD but cannot clearly rule out the involvement of other factors.An unusual decline and collapse of young established trees known as "rapid apple decline" (RAD) has become a major concern for apple growers, particularly in the northeastern United States. This decline is characterized by stunted growth, pale yellow to reddish leaves, and tree collapse within weeks after onset of symptoms. We studied declining apple trees to identify potential involvement of abiotic and biotic stresses. We used 16S and ITS to profile bacterial and fungal communities in the soil, rhizosphere, roots, and shoots and tested for the presence of six viruses in scions and rootstocks of symptomatic and asymptomatic trees. The viruses detected were not associated with RAD symptoms. Bacterial and fungal populations were highly variable in plant tissue, soil and rhizosphere samples, with bacteroidetes, firmicutes, proteobacteria, acidobacteria, and actinobacteria the predominant bacterial classes in various samples. 'Alphaproteobacteria-rickettsiales', a bacterial class usually reduced in water-limiting soils, had significantly low abundance in root samples of symptomatic trees. Basidiomycota and Ascomycota fungal classes were the most common fungal classes observed, but neither showed differential enrichment between symptomatic and asymptomatic trees. Analyzing weather data showed an extremely cold winter followed by drought in 2015-2016, which likely weakened the trees to make them more susceptible to varied stresses. In addition, similar physical and nutritional soil composition from symptomatic and asymptomatic trees rules out the role of nutritional stress in RAD. Necrotic lesions and wood decay symptoms dispersing from bark or vascular cambium towards the heartwood were observed primarily below the graft union of declining apple trees, suggesting that the rootstock is the originating point of RAD. We speculate that differences in abiotic factors such as moisture levels in declining roots in combination with extreme weather profiles might cause RAD but cannot clearly rule out the involvement of other factors. An unusual decline and collapse of young established trees known as "rapid apple decline" (RAD) has become a major concern for apple growers, particularly in the northeastern United States. This decline is characterized by stunted growth, pale yellow to reddish leaves, and tree collapse within weeks after onset of symptoms. We studied declining apple trees to identify potential involvement of abiotic and biotic stresses. We used 16S and ITS to profile bacterial and fungal communities in the soil, rhizosphere, roots, and shoots and tested for the presence of six viruses in scions and rootstocks of symptomatic and asymptomatic trees. The viruses detected were not associated with RAD symptoms. Bacterial and fungal populations were highly variable in plant tissue, soil and rhizosphere samples, with bacteroidetes, firmicutes, proteobacteria, acidobacteria, and actinobacteria the predominant bacterial classes in various samples. 'Alphaproteobacteria-rickettsiales', a bacterial class usually reduced in water-limiting soils, had significantly low abundance in root samples of symptomatic trees. Basidiomycota and Ascomycota fungal classes were the most common fungal classes observed, but neither showed differential enrichment between symptomatic and asymptomatic trees. Analyzing weather data showed an extremely cold winter followed by drought in 2015-2016, which likely weakened the trees to make them more susceptible to varied stresses. In addition, similar physical and nutritional soil composition from symptomatic and asymptomatic trees rules out the role of nutritional stress in RAD. Necrotic lesions and wood decay symptoms dispersing from bark or vascular cambium towards the heartwood were observed primarily below the graft union of declining apple trees, suggesting that the rootstock is the originating point of RAD. We speculate that differences in abiotic factors such as moisture levels in declining roots in combination with extreme weather profiles might cause RAD but cannot clearly rule out the involvement of other factors. |
| Audience | Academic |
| Author | Singh, Jugpreet Khan, Awais Silva, Katchen Julliany Pereira Fuchs, Marc |
| AuthorAffiliation | Estacion Experimental del Zaidin, SPAIN Plant Pathology and Plant-Microbe Biology Section, Cornell University, Geneva, NY, United Sttaes of America |
| AuthorAffiliation_xml | – name: Estacion Experimental del Zaidin, SPAIN – name: Plant Pathology and Plant-Microbe Biology Section, Cornell University, Geneva, NY, United Sttaes of America |
| Author_xml | – sequence: 1 givenname: Jugpreet orcidid: 0000-0002-5615-8312 surname: Singh fullname: Singh, Jugpreet – sequence: 2 givenname: Katchen Julliany Pereira surname: Silva fullname: Silva, Katchen Julliany Pereira – sequence: 3 givenname: Marc surname: Fuchs fullname: Fuchs, Marc – sequence: 4 givenname: Awais orcidid: 0000-0002-0424-7727 surname: Khan fullname: Khan, Awais |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/30840713$$D View this record in MEDLINE/PubMed |
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| Cites_doi | 10.1023/A:1022172515878 10.1016/j.scienta.2007.04.012 10.1038/ismej.2013.104 10.1186/s12985-018-0998-3 10.1371/journal.pone.0002702 10.1128/MMBR.00050-14 10.4141/P03-177 10.1016/j.chom.2015.01.011 10.1371/journal.pone.0159450 10.1093/bioinformatics/btu170 10.1016/0038-0717(91)90044-K 10.1038/s41598-018-29346-1 10.1016/j.apsoil.2014.06.005 10.1186/gb-2013-14-6-209 10.1073/pnas.1717617115 10.1038/s41598-017-08398-9 10.1139/x84-064 10.1016/j.apsoil.2017.02.002 10.1093/treephys/tpu012 10.1146/annurev-phyto-081211-173005 10.1016/j.plaphy.2011.10.014 10.1016/j.jplph.2005.01.018 10.21273/HORTSCI.46.11.1460 10.4141/CJPS09042 10.1094/PDIS.2002.86.6.669 10.21273/JASHS.118.1.63 10.4141/P98-028 10.1641/B580311 10.1038/s41467-018-05683-7 10.1111/nph.12797 10.1016/j.soilbio.2007.01.023 10.1016/0964-8305(95)00109-3 10.1128/AEM.71.9.4951-4959.2005 10.1093/jxb/erg132 10.1186/s40168-018-0403-x 10.3389/fpls.2014.00216 10.1007/s00425-011-1460-6 10.1016/j.tplants.2012.04.001 10.3389/fmicb.2015.01137 10.1038/ismej.2012.113 10.1038/ismej.2016.65 10.1094/PHYTO.1998.88.9.930 |
| ContentType | Journal Article |
| Copyright | COPYRIGHT 2019 Public Library of Science 2019 Singh et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. 2019 Singh et al 2019 Singh et al |
| Copyright_xml | – notice: COPYRIGHT 2019 Public Library of Science – notice: 2019 Singh et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. – notice: 2019 Singh et al 2019 Singh et al |
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| Snippet | An unusual decline and collapse of young established trees known as "rapid apple decline" (RAD) has become a major concern for apple growers, particularly in... An unusual decline and collapse of young established trees known as “rapid apple decline” (RAD) has become a major concern for apple growers, particularly in... |
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| SubjectTerms | Abiotic factors Abundance Analysis Apples Bacteria Bark Biology Biology and Life Sciences Collapse Data processing Decay fungi Drought Ecology and Environmental Sciences Ecosystem components Ecosystems Environmental aspects Extreme weather Farmers Fruit trade Fruit trees Fruits Fungi Insects Leaves Lesions Malus - growth & development Malus - microbiology Meteorological data Microbial activity Microbiota Microorganisms Nutrient deficiency Plant communities Plant diseases Plant Leaves - microbiology Plant pathology Plant Roots - microbiology Plant tissues Rhizosphere Roots Rootstocks Scions Shoots Signs and symptoms Soil - chemistry Soil composition Soil Microbiology Soil moisture Soil water Soils Stresses Trees Trees - growth & development Trees - microbiology Viruses Weather Wood |
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| Title | Potential role of weather, soil and plant microbial communities in rapid decline of apple trees |
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