Introducing difference recurrence relations for faster semi-global alignment of long sequences

Background The read length of single-molecule DNA sequencers is reaching 1 Mb. Popular alignment software tools widely used for analyzing such long reads often take advantage of single-instruction multiple-data (SIMD) operations to accelerate calculation of dynamic programming (DP) matrices in the S...

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Bibliographic Details
Published in:	BMC bioinformatics Vol. 19; no. Suppl 1; pp. 45 - 47
Main Authors:	Suzuki, Hajime, Kasahara, Masahiro
Format:	Journal Article
Language:	English
Published:	London BioMed Central 19.02.2018 BioMed Central Ltd BMC
Subjects:	Algorithms Alignment Base sequence Bioinformatics Biomedical and Life Sciences Computational Biology/Bioinformatics Computer Appl. in Life Sciences Humans Life Sciences Long read Methodology Microarrays Sequence Alignment - methods Sequence analysis Sequence Analysis, DNA - methods Software Sequence analysis Alignment Long read
ISSN:	1471-2105, 1471-2105
Online Access:	Get full text
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