A Practical Bioinformatics Workflow for Routine Analysis of Bacterial WGS Data

The use of whole-genome sequencing (WGS) for bacterial characterisation has increased substantially in the last decade. Its high throughput and decreasing cost have led to significant changes in outbreak investigations and surveillance of a wide variety of microbial pathogens. Despite the innumerabl...

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Bibliographic Details
Published in:	Microorganisms (Basel) Vol. 10; no. 12; p. 2364
Main Authors:	Atxaerandio-Landa, Aitor, Arrieta-Gisasola, Ainhoa, Laorden, Lorena, Bikandi, Joseba, Garaizar, Javier, Martinez-Malaxetxebarria, Irati, Martinez-Ballesteros, Ilargi
Format:	Journal Article
Language:	English
Published:	Switzerland MDPI AG 29.11.2022 MDPI
Subjects:	Annotations antibiotic resistance Antimicrobial resistance Bacteria Bacteria, Pathogenic Bioinformatics bioinformatics workflow Clustering Computational biology Data analysis Data mining DNA sequencing Epidemiology foodborne pathogens Galaxy Gene polymorphism Gene sequencing Genes Genetic aspects genome Genomes Genomics Identification and classification Laboratories Methods Microbiological research Microorganisms monitoring Nucleotide sequence Nucleotide sequencing Nucleotides Outbreaks Pathogens Phylogenetics Phylogeny plasmids Polymorphism prediction Public health replicon Salmonella Salmonella enterica serotypes Single-nucleotide polymorphism Software packages species identification Surveillance Virulence Whole genome sequencing Workflow Spain Europe Galaxy foodborne pathogens whole-genome sequencing bioinformatics workflow
ISSN:	2076-2607, 2076-2607
Online Access:	Get full text
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