Visualizing the Chain-Flipping Mechanism in Fatty-Acid Biosynthesis

The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. We exploited solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. The addition of a catalytic partn...

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Veröffentlicht in:Angewandte Chemie (International ed.) Jg. 53; H. 52; S. 14456 - 14461
Hauptverfasser: Beld, Joris, Cang, Hu, Burkart, Michael D.
Format: Journal Article
Sprache:Englisch
Veröffentlicht: Weinheim WILEY-VCH Verlag 22.12.2014
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Abstract The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. We exploited solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. The addition of a catalytic partner lures the cargo out of the ACP and into the active site of the enzyme, thus enhancing fluorescence to reveal the elusive chain‐flipping mechanism. This activity was confirmed by the use of a dual solvatochromic cross‐linking probe and solution‐phase NMR spectroscopy. The chain‐flipping mechanism was visualized by single‐molecule fluorescence techniques, thus demonstrating specificity between the Escherichia coli ACP and its ketoacyl synthase catalytic partner KASII. Flipping out in style: Protein–protein interactions with the partner protein ketoacyl synthase II (KASII) cause fatty‐acid‐intermediate cargo sequestered by the acyl carrier protein (ACP) to flip from the hydrophobic core of the carrier protein into the active site of the partner protein. Solvatochromic pantetheine probes were used to visualize this event (see picture).
AbstractList The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. We exploited solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. The addition of a catalytic partner lures the cargo out of the ACP and into the active site of the enzyme, thus enhancing fluorescence to reveal the elusive chain-flipping mechanism. This activity was confirmed by the use of a dual solvatochromic cross-linking probe and solution-phase NMR spectroscopy. The chain-flipping mechanism was visualized by single-molecule fluorescence techniques, thus demonstrating specificity between the Escherichia coli ACP and its ketoacyl synthase catalytic partner KASII.
The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. We exploited solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. The addition of a catalytic partner lures the cargo out of the ACP and into the active site of the enzyme, thus enhancing fluorescence to reveal the elusive chain‐flipping mechanism. This activity was confirmed by the use of a dual solvatochromic cross‐linking probe and solution‐phase NMR spectroscopy. The chain‐flipping mechanism was visualized by single‐molecule fluorescence techniques, thus demonstrating specificity between the Escherichia coli ACP and its ketoacyl synthase catalytic partner KASII. Flipping out in style: Protein–protein interactions with the partner protein ketoacyl synthase II (KASII) cause fatty‐acid‐intermediate cargo sequestered by the acyl carrier protein (ACP) to flip from the hydrophobic core of the carrier protein into the active site of the partner protein. Solvatochromic pantetheine probes were used to visualize this event (see picture).
The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. We exploited solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. The addition of a catalytic partner lures the cargo out of the ACP and into the active site of the enzyme, thus enhancing fluorescence to reveal the elusive chain-flipping mechanism. This activity was confirmed by the use of a dual solvatochromic cross-linking probe and solution-phase NMR spectroscopy. The chain-flipping mechanism was visualized by single-molecule fluorescence techniques, thus demonstrating specificity between the Escherichia coli ACP and its ketoacyl synthase catalytic partner KASII. Flipping out in style: Protein-protein interactions with the partner protein ketoacyl synthaseII (KASII) cause fatty-acid-intermediate cargo sequestered by the acyl carrier protein (ACP) to flip from the hydrophobic core of the carrier protein into the active site of the partner protein. Solvatochromic pantetheine probes were used to visualize this event (see picture).
In the fatty acid biosynthesis of plants and bacteria, the acyl carrier protein (ACP) is known to sequester elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. In this paper we exploit solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. Addition of a catalytic partner lures the cargo out of the ACP and into the active site of the enzyme, enhancing fluorescence to reveal the elusive chain-flipping mechanism. This activity is confirmed by demonstration of a dual solvatochromic-crosslinking probe and solution-phase NMR. The chain-flipping mechanism can be visualized by single molecule fluorescent techniques, demonstrating specificity between the Escherichia coli ACP and its ketoacyl synthase catalytic partner KASII.
The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. We exploited solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. The addition of a catalytic partner lures the cargo out of the ACP and into the active site of the enzyme, thus enhancing fluorescence to reveal the elusive chain-flipping mechanism. This activity was confirmed by the use of a dual solvatochromic cross-linking probe and solution-phase NMR spectroscopy. The chain-flipping mechanism was visualized by single-molecule fluorescence techniques, thus demonstrating specificity between the Escherichia coli ACP and its ketoacyl synthase catalytic partner KASII.The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. We exploited solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. The addition of a catalytic partner lures the cargo out of the ACP and into the active site of the enzyme, thus enhancing fluorescence to reveal the elusive chain-flipping mechanism. This activity was confirmed by the use of a dual solvatochromic cross-linking probe and solution-phase NMR spectroscopy. The chain-flipping mechanism was visualized by single-molecule fluorescence techniques, thus demonstrating specificity between the Escherichia coli ACP and its ketoacyl synthase catalytic partner KASII.
The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. In this paper, we exploited solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. The addition of a catalytic partner lures the cargo out of the ACP and into the active site of the enzyme, thus enhancing fluorescence to reveal the elusive chain-flipping mechanism. This activity was confirmed by the use of a dual solvatochromic cross-linking probe and solution-phase NMR spectroscopy. Finally, the chain-flipping mechanism was visualized by single-molecule fluorescence techniques, thus demonstrating specificity between the Escherichia coli ACP and its ketoacyl synthase catalytic partner KASII.
The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. We exploited solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. The addition of a catalytic partner lures the cargo out of the ACP and into the active site of the enzyme, thus enhancing fluorescence to reveal the elusive chain‐flipping mechanism. This activity was confirmed by the use of a dual solvatochromic cross‐linking probe and solution‐phase NMR spectroscopy. The chain‐flipping mechanism was visualized by single‐molecule fluorescence techniques, thus demonstrating specificity between the Escherichia coli ACP and its ketoacyl synthase catalytic partner KASII.
Author Beld, Joris
Cang, Hu
Burkart, Michael D.
AuthorAffiliation a Department of Chemistry and Biochemistry, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0358, USA
b Waitt Advanced Biophotonics Center, The Salk Institute for Biological Studies, La Jolla, California, USA
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  surname: Burkart
  fullname: Burkart, Michael D.
  email: mburkart@ucsd.edu
  organization: Department of Chemistry and Biochemistry, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0358 (USA)
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Copyright 2014 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim
2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
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Issue 52
Keywords DOMAIN
fatty acids
ESCHERICHIA-COLI
chain-flipping mechanism
SYNTHASE
BETA-KETOACYL
acyl carrier protein
FLUORESCENCE
SPECTROSCOPY
fatty acid synthase
SPINACH
DYNAMICS
solvatochromism
Language English
License http://onlinelibrary.wiley.com/termsAndConditions#vor
2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
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J.B. was supported by a Rubicon postdoctoral fellowship. M.D.B. and J.B. were funded by California Energy Commission CILMSF 500-10-039; DOE DE-EE0003373; NIH R01GM094924; and R01GM095970. We thank J. J. La Clair for fruitful discussions and support, X. Huang and D. J. Lee for training and support with solution protein NMR spectroscopy, and T. L. Foley (NIH) for the plasmid encoding H. sapiens ACP.
J.B. was supported by a Rubicon postdoctoral fellowship. M.D.B. and J.B. were funded by California Energy Commission CILMSF 500‐10‐039; DOE DE‐EE0003373; NIH R01GM094924; and R01GM095970. We thank J. J. La Clair for fruitful discussions and support, X. Huang and D. J. Lee for training and support with solution protein NMR spectroscopy, and T. L. Foley (NIH) for the plasmid encoding
ACP.
H. sapiens
NIH RePORTER
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– name: Wiley
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Snippet The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly...
In the fatty acid biosynthesis of plants and bacteria, the acyl carrier protein (ACP) is known to sequester elongating products within its hydrophobic core,...
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SubjectTerms acyl carrier protein
Acyl Carrier Protein - chemistry
Acyl Carrier Protein - metabolism
BASIC BIOLOGICAL SCIENCES
Biosynthesis
Carriers
Catalysis
Catalysts
chain-flipping mechanism
Chains
Chemistry
Chemistry, Multidisciplinary
E coli
Elongation
Escherichia coli
fatty acid synthase
Fatty acids
Fatty Acids - biosynthesis
Fluorescence
Naphthalimides - chemistry
Nuclear Magnetic Resonance, Biomolecular
Oxadiazoles - chemistry
Physical Sciences
Protein Interaction Domains and Motifs
Proteins
Rhodamines - chemistry
Science & Technology
solvatochromism
Solvents - chemistry
Title Visualizing the Chain-Flipping Mechanism in Fatty-Acid Biosynthesis
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