Visualizing the Chain-Flipping Mechanism in Fatty-Acid Biosynthesis
The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. We exploited solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. The addition of a catalytic partn...
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| Veröffentlicht in: | Angewandte Chemie (International ed.) Jg. 53; H. 52; S. 14456 - 14461 |
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Weinheim
WILEY-VCH Verlag
22.12.2014
WILEY‐VCH Verlag Wiley Wiley Subscription Services, Inc |
| Ausgabe: | International ed. in English |
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| ISSN: | 1433-7851, 1521-3773, 1521-3773 |
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| Abstract | The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. We exploited solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. The addition of a catalytic partner lures the cargo out of the ACP and into the active site of the enzyme, thus enhancing fluorescence to reveal the elusive chain‐flipping mechanism. This activity was confirmed by the use of a dual solvatochromic cross‐linking probe and solution‐phase NMR spectroscopy. The chain‐flipping mechanism was visualized by single‐molecule fluorescence techniques, thus demonstrating specificity between the Escherichia coli ACP and its ketoacyl synthase catalytic partner KASII.
Flipping out in style: Protein–protein interactions with the partner protein ketoacyl synthase II (KASII) cause fatty‐acid‐intermediate cargo sequestered by the acyl carrier protein (ACP) to flip from the hydrophobic core of the carrier protein into the active site of the partner protein. Solvatochromic pantetheine probes were used to visualize this event (see picture). |
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| AbstractList | The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. We exploited solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. The addition of a catalytic partner lures the cargo out of the ACP and into the active site of the enzyme, thus enhancing fluorescence to reveal the elusive chain-flipping mechanism. This activity was confirmed by the use of a dual solvatochromic cross-linking probe and solution-phase NMR spectroscopy. The chain-flipping mechanism was visualized by single-molecule fluorescence techniques, thus demonstrating specificity between the Escherichia coli ACP and its ketoacyl synthase catalytic partner KASII. The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. We exploited solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. The addition of a catalytic partner lures the cargo out of the ACP and into the active site of the enzyme, thus enhancing fluorescence to reveal the elusive chain‐flipping mechanism. This activity was confirmed by the use of a dual solvatochromic cross‐linking probe and solution‐phase NMR spectroscopy. The chain‐flipping mechanism was visualized by single‐molecule fluorescence techniques, thus demonstrating specificity between the Escherichia coli ACP and its ketoacyl synthase catalytic partner KASII. Flipping out in style: Protein–protein interactions with the partner protein ketoacyl synthase II (KASII) cause fatty‐acid‐intermediate cargo sequestered by the acyl carrier protein (ACP) to flip from the hydrophobic core of the carrier protein into the active site of the partner protein. Solvatochromic pantetheine probes were used to visualize this event (see picture). The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. We exploited solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. The addition of a catalytic partner lures the cargo out of the ACP and into the active site of the enzyme, thus enhancing fluorescence to reveal the elusive chain-flipping mechanism. This activity was confirmed by the use of a dual solvatochromic cross-linking probe and solution-phase NMR spectroscopy. The chain-flipping mechanism was visualized by single-molecule fluorescence techniques, thus demonstrating specificity between the Escherichia coli ACP and its ketoacyl synthase catalytic partner KASII. Flipping out in style: Protein-protein interactions with the partner protein ketoacyl synthaseII (KASII) cause fatty-acid-intermediate cargo sequestered by the acyl carrier protein (ACP) to flip from the hydrophobic core of the carrier protein into the active site of the partner protein. Solvatochromic pantetheine probes were used to visualize this event (see picture). In the fatty acid biosynthesis of plants and bacteria, the acyl carrier protein (ACP) is known to sequester elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. In this paper we exploit solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. Addition of a catalytic partner lures the cargo out of the ACP and into the active site of the enzyme, enhancing fluorescence to reveal the elusive chain-flipping mechanism. This activity is confirmed by demonstration of a dual solvatochromic-crosslinking probe and solution-phase NMR. The chain-flipping mechanism can be visualized by single molecule fluorescent techniques, demonstrating specificity between the Escherichia coli ACP and its ketoacyl synthase catalytic partner KASII. The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. We exploited solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. The addition of a catalytic partner lures the cargo out of the ACP and into the active site of the enzyme, thus enhancing fluorescence to reveal the elusive chain-flipping mechanism. This activity was confirmed by the use of a dual solvatochromic cross-linking probe and solution-phase NMR spectroscopy. The chain-flipping mechanism was visualized by single-molecule fluorescence techniques, thus demonstrating specificity between the Escherichia coli ACP and its ketoacyl synthase catalytic partner KASII.The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. We exploited solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. The addition of a catalytic partner lures the cargo out of the ACP and into the active site of the enzyme, thus enhancing fluorescence to reveal the elusive chain-flipping mechanism. This activity was confirmed by the use of a dual solvatochromic cross-linking probe and solution-phase NMR spectroscopy. The chain-flipping mechanism was visualized by single-molecule fluorescence techniques, thus demonstrating specificity between the Escherichia coli ACP and its ketoacyl synthase catalytic partner KASII. The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. In this paper, we exploited solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. The addition of a catalytic partner lures the cargo out of the ACP and into the active site of the enzyme, thus enhancing fluorescence to reveal the elusive chain-flipping mechanism. This activity was confirmed by the use of a dual solvatochromic cross-linking probe and solution-phase NMR spectroscopy. Finally, the chain-flipping mechanism was visualized by single-molecule fluorescence techniques, thus demonstrating specificity between the Escherichia coli ACP and its ketoacyl synthase catalytic partner KASII. The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly understood. We exploited solvatochromic pantetheine probes attached to ACP that fluoresce when sequestered. The addition of a catalytic partner lures the cargo out of the ACP and into the active site of the enzyme, thus enhancing fluorescence to reveal the elusive chain‐flipping mechanism. This activity was confirmed by the use of a dual solvatochromic cross‐linking probe and solution‐phase NMR spectroscopy. The chain‐flipping mechanism was visualized by single‐molecule fluorescence techniques, thus demonstrating specificity between the Escherichia coli ACP and its ketoacyl synthase catalytic partner KASII. |
| Author | Beld, Joris Cang, Hu Burkart, Michael D. |
| AuthorAffiliation | a Department of Chemistry and Biochemistry, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0358, USA b Waitt Advanced Biophotonics Center, The Salk Institute for Biological Studies, La Jolla, California, USA |
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| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/25354391$$D View this record in MEDLINE/PubMed https://www.osti.gov/servlets/purl/1342736$$D View this record in Osti.gov |
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| Copyright | 2014 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim. 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim |
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| Issue | 52 |
| Keywords | DOMAIN fatty acids ESCHERICHIA-COLI chain-flipping mechanism SYNTHASE BETA-KETOACYL acyl carrier protein FLUORESCENCE SPECTROSCOPY fatty acid synthase SPINACH DYNAMICS solvatochromism |
| Language | English |
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| Notes | ark:/67375/WNG-LMGQ30PL-L California Energy Commission - No. DOE DE-EE0003373 istex:F98B625171FF6CA00D98E204DDD3BBA6F5104B75 NIH - No. R01GM094924; No. R01GM095970 ArticleID:ANIE201408576 J.B. was supported by a Rubicon postdoctoral fellowship. M.D.B. and J.B. were funded by California Energy Commission CILMSF 500-10-039; DOE DE-EE0003373; NIH R01GM094924; and R01GM095970. We thank J. J. La Clair for fruitful discussions and support, X. Huang and D. J. Lee for training and support with solution protein NMR spectroscopy, and T. L. Foley (NIH) for the plasmid encoding H. sapiens ACP. J.B. was supported by a Rubicon postdoctoral fellowship. M.D.B. and J.B. were funded by California Energy Commission CILMSF 500‐10‐039; DOE DE‐EE0003373; NIH R01GM094924; and R01GM095970. We thank J. J. La Clair for fruitful discussions and support, X. Huang and D. J. Lee for training and support with solution protein NMR spectroscopy, and T. L. Foley (NIH) for the plasmid encoding ACP. H. sapiens NIH RePORTER ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 content type line 23 EE0003373 USDOE Office of Energy Efficiency and Renewable Energy (EERE), Sustainable Transportation Office. Bioenergy Technologies Office |
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| SSID | ssj0028806 |
| Score | 2.3451416 |
| Snippet | The acyl carrier protein (ACP) from fatty acid synthases sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poorly... In the fatty acid biosynthesis of plants and bacteria, the acyl carrier protein (ACP) is known to sequester elongating products within its hydrophobic core,... |
| Source | Web of Science |
| SourceID | pubmedcentral osti proquest pubmed webofscience crossref wiley istex |
| SourceType | Open Access Repository Aggregation Database Index Database Enrichment Source Publisher |
| StartPage | 14456 |
| SubjectTerms | acyl carrier protein Acyl Carrier Protein - chemistry Acyl Carrier Protein - metabolism BASIC BIOLOGICAL SCIENCES Biosynthesis Carriers Catalysis Catalysts chain-flipping mechanism Chains Chemistry Chemistry, Multidisciplinary E coli Elongation Escherichia coli fatty acid synthase Fatty acids Fatty Acids - biosynthesis Fluorescence Naphthalimides - chemistry Nuclear Magnetic Resonance, Biomolecular Oxadiazoles - chemistry Physical Sciences Protein Interaction Domains and Motifs Proteins Rhodamines - chemistry Science & Technology solvatochromism Solvents - chemistry |
| Title | Visualizing the Chain-Flipping Mechanism in Fatty-Acid Biosynthesis |
| URI | https://api.istex.fr/ark:/67375/WNG-LMGQ30PL-L/fulltext.pdf https://onlinelibrary.wiley.com/doi/abs/10.1002%2Fanie.201408576 http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=Summon&SrcAuth=ProQuest&DestApp=WOS&DestLinkType=FullRecord&UT=000346485800027 https://www.ncbi.nlm.nih.gov/pubmed/25354391 https://www.proquest.com/docview/1636824827 https://www.proquest.com/docview/1639494727 https://www.proquest.com/docview/1701002571 https://www.osti.gov/servlets/purl/1342736 https://pubmed.ncbi.nlm.nih.gov/PMC4425425 |
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