Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG)
In April 2008, a nucleotide-sequence-based, complete genome classification system was developed for group A rotaviruses (RVs). This system assigns a specific genotype to each of the 11 genome segments of a particular RV strain according to established nucleotide percent cutoff values. Using this app...
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| Vydané v: | Archives of virology Ročník 156; číslo 8; s. 1397 - 1413 |
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| Hlavní autori: | , , , , , , , , , , , , , , , , , , , , , , , , , |
| Médium: | Journal Article |
| Jazyk: | English |
| Vydavateľské údaje: |
Vienna
Springer Vienna
01.08.2011
Springer Springer Nature B.V Springer Verlag |
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| ISSN: | 0304-8608, 1432-8798, 1432-8798 |
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| Abstract | In April 2008, a nucleotide-sequence-based, complete genome classification system was developed for group A rotaviruses (RVs). This system assigns a specific genotype to each of the 11 genome segments of a particular RV strain according to established nucleotide percent cutoff values. Using this approach, the genome of individual RV strains are given the complete descriptor of Gx-P[x]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-Ex-Hx. The Rotavirus Classification Working Group (RCWG) was formed by scientists in the field to maintain, evaluate and develop the RV genotype classification system, in particular to aid in the designation of new genotypes. Since its conception, the group has ratified 51 new genotypes: as of April 2011, new genotypes for VP7 (G20-G27), VP4 (P[28]-P[35]), VP6 (I12-I16), VP1 (R5-R9), VP2 (C6-C9), VP3 (M7-M8), NSP1 (A15-A16), NSP2 (N6-N9), NSP3 (T8-T12), NSP4 (E12-E14) and NSP5/6 (H7-H11) have been defined for RV strains recovered from humans, cows, pigs, horses, mice, South American camelids (guanaco), chickens, turkeys, pheasants, bats and a sugar glider. With increasing numbers of complete RV genome sequences becoming available, a standardized RV strain nomenclature system is needed, and the RCWG proposes that individual RV strains are named as follows: RV group/species of origin/country of identification/common name/year of identification/G- and P-type. In collaboration with the National Center for Biotechnology Information (NCBI), the RCWG is also working on developing a RV-specific resource for the deposition of nucleotide sequences. This resource will provide useful information regarding RV strains, including, but not limited to, the individual gene genotypes and epidemiological and clinical information. Together, the proposed nomenclature system and the NCBI RV resource will offer highly useful tools for investigators to search for, retrieve, and analyze the ever-growing volume of RV genomic data. |
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| AbstractList | In April 2008, a nucleotide-sequence-based, complete genome classification system was developed for group A rotaviruses (RVs). This system assigns a specific genotype to each of the 11 genome segments of a particular RV strain according to established nucleotide percent cutoff values. Using this approach, the genome of individual RV strains are given the complete descriptor of Gx-P[x]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-Ex-Hx. The Rotavirus Classification Working Group (RCWG) was formed by scientists in the field to maintain, evaluate and develop the RV genotype classification system, in particular to aid in the designation of new genotypes. Since its conception, the group has ratified 51 new genotypes: as of April 2011, new genotypes for VP7 (G20-G27), VP4 (P[28]-P[35]), VP6 (I12-I16), VP1 (R5-R9), VP2 (C6-C9), VP3 (M7-M8), NSP1 (A15-A16), NSP2 (N6-N9), NSP3 (T8-T12), NSP4 (E12-E14) and NSP5/6 (H7-H11) have been defined for RV strains recovered from humans, cows, pigs, horses, mice, South American camelids (guanaco), chickens, turkeys, pheasants, bats and a sugar glider. With increasing numbers of complete RV genome sequences becoming available, a standardized RV strain nomenclature system is needed, and the RCWG proposes that individual RV strains are named as follows: RV group/species of origin/country of identification/common name/year of identification/G- and P-type. In collaboration with the National Center for Biotechnology Information (NCBI), the RCWG is also working on developing a RV-specific resource for the deposition of nucleotide sequences. This resource will provide useful information regarding RV strains, including, but not limited to, the individual gene genotypes and epidemiological and clinical information. Together, the proposed nomenclature system and the NCBI RV resource will offer highly useful tools for investigators to search for, retrieve, and analyze the ever-growing volume of RV genomic data. In April 2008, a nucleotide-sequence-based, complete genome classification system was developed for group A rotaviruses (RVs). This system assigns a specific genotype to each of the 11 genome segments of a particular RV strain according to established nucleotide percent cutoff values. Using this approach, the genome of individual RV strains are given the complete descriptor of Gx-P[x]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-Ex-Hx. The Rotavirus Classification Working Group (RCWG) was formed by scientists in the field to maintain, evaluate and develop the RV genotype classification system, in particular to aid in the designation of new genotypes. Since its conception, the group has ratified 51 new genotypes: as of April 2011, new genotypes for VP7 (G20-G27), VP4 (P[28]-P[35]), VP6 (I12-I16), VP1 (R5-R9), VP2 (C6-C9), VP3 (M7-M8), NSP1 (A15-A16), NSP2 (N6-N9), NSP3 (T8-T12), NSP4 (E12-E14) and NSP5/6 (H7-H11) have been defined for RV strains recovered from humans, cows, pigs, horses, mice, South American camelids (guanaco), chickens, turkeys, pheasants, bats and a sugar glider. With increasing numbers of complete RV genome sequences becoming available, a standardized RV strain nomenclature system is needed, and the RCWG proposes that individual RV strains are named as follows: RV group/species of origin/country of identification/common name/year of identification/G- and P-type. In collaboration with the National Center for Biotechnology Information (NCBI), the RCWG is also working on developing a RV-specific resource for the deposition of nucleotide sequences. This resource will provide useful information regarding RV strains, including, but not limited to, the individual gene genotypes and epidemiological and clinical information. Together, the proposed nomenclature system and the NCBI RV resource will offer highly useful tools for investigators to search for, retrieve, and analyze the ever-growing volume of RV genomic data.[PUBLICATION ABSTRACT] In April 2008, a nucleotide-sequence-based, complete genome classification system was developed for group A rotaviruses (RVs). This system assigns a specific genotype to each of the 11 genome segments of a particular RV strain according to established nucleotide percent cutoff values. Using this approach, the genome of individual RV strains are given the complete descriptor of Gx-P[x]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-Ex-Hx. The Rotavirus Classification Working Group (RCWG) was formed by scientists in the field to maintain, evaluate and develop the RV genotype classification system, in particular to aid in the designation of new genotypes. Since its conception, the group has ratified 51 new genotypes: as of April 2011, new genotypes for VP7 (G20-G27), VP4 (P[28]-P[35]), VP6 (I12-I16), VP1 (R5-R9), VP2 (C6-C9), VP3 (M7-M8), NSP1 (A15-A16), NSP2 (N6-N9), NSP3 (T8-T12), NSP4 (E12-E14) and NSP5/6 (H7-H11) have been defined for RV strains recovered from humans, cows, pigs, horses, mice, South American camelids (guanaco), chickens, turkeys, pheasants, bats and a sugar glider. With In April 2008, a nucleotide-sequence-based, complete genome classification system was developed for group A rotaviruses (RVs). This system assigns a specific genotype to each of the 11 genome segments of a particular RV strain according to established nucleotide percent cutoff values. Using this approach, the genome of individual RV strains are given the complete descriptor of Gx-P[x]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-Ex-Hx. The Rotavirus Classification Working Group (RCWG) was formed by scientists in the field to maintain, evaluate and develop the RV genotype classification system, in particular to aid in the designation of new genotypes. Since its conception, the group has ratified 51 new genotypes: as of April 2011, new genotypes for VP7 (G20-G27), VP4 (P[28]-P[35]), VP6 (I12-I16), VP1 (R5-R9), VP2 (C6-C9), VP3 (M7-M8), NSP1 (A15-A16), NSP2 (N6-N9), NSP3 (T8-T12), NSP4 (E12-E14) and NSP5/6 (H7-H11) have been defined for RV strains recovered from humans, cows, pigs, horses, mice, South American camelids (guanaco), chickens, turkeys, pheasants, bats and a sugar glider. With increasing numbers of complete RV genome sequences becoming available, a standardized RV strain nomenclature system is needed, and the RCWG proposes that individual RV strains are named as follows: RV group/species of origin/country of identification/common name/year of identification/G- and P-type. In collaboration with the National Center for Biotechnology Information (NCBI), the RCWG is also working on developing a RV-specific resource for the deposition of nucleotide sequences. This resource will provide useful information regarding RV strains, including, but not limited to, the individual gene genotypes and epidemiological and clinical information. Together, the proposed nomenclature system and the NCBI RV resource will offer highly useful tools for investigators to search for, retrieve, and analyze the ever-growing volume of RV genomic data.In April 2008, a nucleotide-sequence-based, complete genome classification system was developed for group A rotaviruses (RVs). This system assigns a specific genotype to each of the 11 genome segments of a particular RV strain according to established nucleotide percent cutoff values. Using this approach, the genome of individual RV strains are given the complete descriptor of Gx-P[x]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-Ex-Hx. The Rotavirus Classification Working Group (RCWG) was formed by scientists in the field to maintain, evaluate and develop the RV genotype classification system, in particular to aid in the designation of new genotypes. Since its conception, the group has ratified 51 new genotypes: as of April 2011, new genotypes for VP7 (G20-G27), VP4 (P[28]-P[35]), VP6 (I12-I16), VP1 (R5-R9), VP2 (C6-C9), VP3 (M7-M8), NSP1 (A15-A16), NSP2 (N6-N9), NSP3 (T8-T12), NSP4 (E12-E14) and NSP5/6 (H7-H11) have been defined for RV strains recovered from humans, cows, pigs, horses, mice, South American camelids (guanaco), chickens, turkeys, pheasants, bats and a sugar glider. With increasing numbers of complete RV genome sequences becoming available, a standardized RV strain nomenclature system is needed, and the RCWG proposes that individual RV strains are named as follows: RV group/species of origin/country of identification/common name/year of identification/G- and P-type. In collaboration with the National Center for Biotechnology Information (NCBI), the RCWG is also working on developing a RV-specific resource for the deposition of nucleotide sequences. This resource will provide useful information regarding RV strains, including, but not limited to, the individual gene genotypes and epidemiological and clinical information. Together, the proposed nomenclature system and the NCBI RV resource will offer highly useful tools for investigators to search for, retrieve, and analyze the ever-growing volume of RV genomic data. In April 2008, a nucleotide sequence-based, complete genome classification system was developed for group A rotaviruses (RVs). This system assigns a specific genotype to each of the 11 genome segments of a particular RV strain according to established nucleotide percent cut-off values. Using this approach, the genome of individual RV strains are given the complete descriptor of Gx-P[x]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-Ex-Hx. A Rotavirus Classification Working Group (RCWG) was formed by scientists in the field to maintain, evaluate, and develop the RV genotype classification system, in particular to aid in the designation of new genotypes. Since its conception, the group has ratified 50 new genotypes: as of January 2011, new genotypes for VP7 (G20–G26), VP4 (P[28]–P[35]), VP6 (I12–I16), VP1 (R5–R9), VP2 (C6–C9), VP3 (M7–M8), NSP1 (A15–A16), NSP2 (N6–N9), NSP3 (T8–T12), NSP4 (E12–E14), and NSP5/6 (H7–H11) have been defined for RV strains identified in humans, cows, pigs, horses, mice, South American camelids (guanaco and vicuña), chickens, turkeys, pheasants, and bats. With increasing numbers of complete RV genome sequences becoming available, a standardized RV strain nomenclature system is needed and the RCWG proposes that individual RV strains are named as follows: RV group/species of origin/country of identification/common name/year of identification/G- and P-type. In collaboration with the National Center for Biotechnology Information (NCBI), the RCWG is also working on developing a RV-specific resource for the deposition of nucleotide sequences. This resource will provide useful information regarding RV strains, including but not limited to, the individual gene genotypes, epidemiological, and clinical information. Together, the proposed nomenclature system and the NCBI RV resource will offer highly useful tools for investigators to search for, retrieve, and analyze the ever-growing volume of RV genomic data. |
| Author | Bányai, Krisztián Estes, Mary K. Nakagomi, Osamu Kirkwood, Carl D. Matthijnssens, Jelle Brister, J. Rodney Iturriza-Gómara, Miren Ciarlet, Max Desselberger, Ulrich Mertens, Peter P. C. Steyer, Andrej Gentsch, Jon R. Attoui, Houssam Buesa, Javier Parreño, Viviana Taniguchi, Koki Van Ranst, Marc Santos, Norma Johne, Reimar Ruggeri, Franco M. Saif, Linda J. Esona, Mathew D. Rahman, Mustafizur Patton, John T. Martella, Vito McDonald, Sarah M. |
| AuthorAffiliation | 6 National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA 20892 14 Department of Molecular Microbiology and Immunology, Nagasaki University, Nagasaki 852-8523, Japan 13 Department of Veterinary Public Health, University of Bari, Italy 2 Clinical Research and Development, Novartis Vaccines & Diagnostics, Inc, Cambridge, Massachusetts 02139, USA 7 Department of Microbiology and Ecology, School of Medicine, University of Valencia, Avda. Blasco Ibáñez, 17, 46010 Valencia, Spain 3 Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892 USA 16 Laboratory of Virology, ICDDR, B: Mohakhali, Dhaka-1212, Bangladesh 17 Department of Veterinary Public Health & Food Safety, Istituto Superiore di Sanità, Rome, Italy 18 Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University, Wooster OH 44691, USA 12 E |
| AuthorAffiliation_xml | – name: 3 Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892 USA – name: 18 Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University, Wooster OH 44691, USA – name: 2 Clinical Research and Development, Novartis Vaccines & Diagnostics, Inc, Cambridge, Massachusetts 02139, USA – name: 5 Veterinary Medical Research Institute, Hungarian Academy of Sciences, H-1143 Budapest, Hungária krt. 21, Hungary – name: 15 Instituto de Virología, CICVyA, INTA Castelar, Buenos Aires, Argentina – name: 9 Departments of Molecular Virology and Microbiology and Medicine –GI, Baylor College of Medicine, Houston, USA – name: 21 Department of Virology and Parasitology, Fujita Health University School of Medicine, Toyoake, Aichi 470-1192, Japan – name: 11 Federal Institute for Risk Assessment, Berlin, Germany – name: 13 Department of Veterinary Public Health, University of Bari, Italy – name: 8 Centers for Disease Control and Prevention, National Center for Immunization and Respiratory Diseases, Division of Viral Diseases, Atlanta, GA, USA – name: 14 Department of Molecular Microbiology and Immunology, Nagasaki University, Nagasaki 852-8523, Japan – name: 12 Enteric Virus Research Group, Murdoch Childrens Research Institute, Royal Children’s Hospital Parkville, Victoria, Australia – name: 20 University of Ljubljana, Faculty of Medicine, Institute of Microbiology and Immunology, Zaloska 4, SI-1104 Ljubljana, Slovenia – name: 22 Department of Medicine, University of Cambridge, Addenbrooke’s Hospital, Cambridge, U.K – name: 4 Vector-Borne Diseases Program, Institute for Animal Health, Ash Road, Pirbright, Surrey GU24 0NF, UK – name: 10 Enteric Virus Unit, Virus Reference Department, Centre for Infection, Health Protection Agency, Colindale, London, United Kingdom – name: 17 Department of Veterinary Public Health & Food Safety, Istituto Superiore di Sanità, Rome, Italy – name: 19 Departamento de Virologia, Instituto de Microbiologia, Universidade Federal do Rio de Janeiro, Brazil – name: 1 Laboratory of Clinical & Epidemiological Virology, Department of Microbiology & Immunology, Rega Institute for Medical Research, University of Leuven, Belgium – name: 7 Department of Microbiology and Ecology, School of Medicine, University of Valencia, Avda. Blasco Ibáñez, 17, 46010 Valencia, Spain – name: 6 National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA 20892 – name: 16 Laboratory of Virology, ICDDR, B: Mohakhali, Dhaka-1212, Bangladesh |
| Author_xml | – sequence: 1 givenname: Jelle surname: Matthijnssens fullname: Matthijnssens, Jelle email: jelle.matthijnssens@uz.kuleuven.ac.be organization: Laboratory of Clinical & Epidemiological Virology, Department of Microbiology & Immunology, Rega Institute for Medical Research, University of Leuven – sequence: 2 givenname: Max surname: Ciarlet fullname: Ciarlet, Max organization: Clinical Research and Development, Novartis Vaccines & Diagnostics, Inc – sequence: 3 givenname: Sarah M. surname: McDonald fullname: McDonald, Sarah M. organization: Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health – sequence: 4 givenname: Houssam surname: Attoui fullname: Attoui, Houssam organization: Vector-Borne Diseases Program, Institute for Animal Health – sequence: 5 givenname: Krisztián surname: Bányai fullname: Bányai, Krisztián organization: Veterinary Medical Research Institute, Hungarian Academy of Sciences – sequence: 6 givenname: J. Rodney surname: Brister fullname: Brister, J. Rodney organization: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health – sequence: 7 givenname: Javier surname: Buesa fullname: Buesa, Javier organization: Department of Microbiology and Ecology, School of Medicine, University of Valencia – sequence: 8 givenname: Mathew D. surname: Esona fullname: Esona, Mathew D. organization: Division of Viral Diseases, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention – sequence: 9 givenname: Mary K. surname: Estes fullname: Estes, Mary K. organization: Department of Molecular Virology and Microbiology and Medicine-GI, Baylor College of Medicine – sequence: 10 givenname: Jon R. surname: Gentsch fullname: Gentsch, Jon R. organization: Division of Viral Diseases, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention – sequence: 11 givenname: Miren surname: Iturriza-Gómara fullname: Iturriza-Gómara, Miren organization: Enteric Virus Unit, Virus Reference Department, Centre for Infection, Health Protection Agency – sequence: 12 givenname: Reimar surname: Johne fullname: Johne, Reimar organization: Federal Institute for Risk Assessment – sequence: 13 givenname: Carl D. surname: Kirkwood fullname: Kirkwood, Carl D. organization: Enteric Virus Research Group, Murdoch Childrens Research Institute, Royal Children’s Hospital – sequence: 14 givenname: Vito surname: Martella fullname: Martella, Vito organization: Department of Veterinary Public Health, University of Bari – sequence: 15 givenname: Peter P. C. surname: Mertens fullname: Mertens, Peter P. C. organization: Vector-Borne Diseases Program, Institute for Animal Health – sequence: 16 givenname: Osamu surname: Nakagomi fullname: Nakagomi, Osamu organization: Department of Molecular Microbiology and Immunology, Nagasaki University – sequence: 17 givenname: Viviana surname: Parreño fullname: Parreño, Viviana organization: Instituto de Virología, CICVyA, INTA Castelar – sequence: 18 givenname: Mustafizur surname: Rahman fullname: Rahman, Mustafizur organization: Laboratory of Virology, ICDDR,B – sequence: 19 givenname: Franco M. surname: Ruggeri fullname: Ruggeri, Franco M. organization: Department of Veterinary Public Health & Food Safety, Istituto Superiore di Sanità – sequence: 20 givenname: Linda J. surname: Saif fullname: Saif, Linda J. organization: Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University – sequence: 21 givenname: Norma surname: Santos fullname: Santos, Norma organization: Departamento de Virologia, Instituto de Microbiologia, Universidade Federal do Rio de Janeiro – sequence: 22 givenname: Andrej surname: Steyer fullname: Steyer, Andrej organization: University of Ljubljana, Faculty of Medicine, Institute of Microbiology and Immunology – sequence: 23 givenname: Koki surname: Taniguchi fullname: Taniguchi, Koki organization: Department of Virology and Parasitology, Fujita Health University School of Medicine – sequence: 24 givenname: John T. surname: Patton fullname: Patton, John T. organization: Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health – sequence: 25 givenname: Ulrich surname: Desselberger fullname: Desselberger, Ulrich organization: Department of Medicine, Addenbrooke’s Hospital, University of Cambridge – sequence: 26 givenname: Marc surname: Van Ranst fullname: Van Ranst, Marc organization: Laboratory of Clinical & Epidemiological Virology, Department of Microbiology & Immunology, Rega Institute for Medical Research, University of Leuven |
| BackLink | http://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=24404417$$DView record in Pascal Francis https://www.ncbi.nlm.nih.gov/pubmed/21597953$$D View this record in MEDLINE/PubMed https://hal.science/hal-05294732$$DView record in HAL |
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| Issue | 8 |
| Keywords | Genome Segment Nomenclature System Equivalent Mechanism Vaccine Strain Reverse Genetic Virus Rotavirus Nomenclature Reoviridae Strain |
| Language | English |
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