Phylogeny of Yellow Fever Virus, Uganda, 2016
In April 2016, a yellow fever outbreak was detected in Uganda. Removal of contaminating ribosomal RNA in a clinical sample improved the sensitivity of next-generation sequencing. Molecular analyses determined the Uganda yellow fever outbreak was distinct from the concurrent yellow fever outbreak in...
Uloženo v:
| Vydáno v: | Emerging infectious diseases Ročník 24; číslo 8; s. 1598 - 1599 |
|---|---|
| Hlavní autoři: | , , , , , |
| Médium: | Journal Article |
| Jazyk: | angličtina |
| Vydáno: |
United States
U.S. National Center for Infectious Diseases
01.08.2018
Centers for Disease Control and Prevention |
| Témata: | |
| ISSN: | 1080-6040, 1080-6059, 1080-6059 |
| On-line přístup: | Získat plný text |
| Tagy: |
Přidat tag
Žádné tagy, Buďte první, kdo vytvoří štítek k tomuto záznamu!
|
| Abstract | In April 2016, a yellow fever outbreak was detected in Uganda. Removal of contaminating ribosomal RNA in a clinical sample improved the sensitivity of next-generation sequencing. Molecular analyses determined the Uganda yellow fever outbreak was distinct from the concurrent yellow fever outbreak in Angola, improving our understanding of yellow fever epidemiology. |
|---|---|
| AbstractList | In April 2016, a yellow fever outbreak was detected in Uganda. Removal of contaminating ribosomal RNA in a clinical sample improved the sensitivity of next-generation sequencing. Molecular analyses determined the Uganda yellow fever outbreak was distinct from the concurrent yellow fever outbreak in Angola, improving our understanding of yellow fever epidemiology. In April 2016, a yellow fever outbreak was detected in Uganda. Removal of contaminating ribosomal RNA in a clinical sample improved the sensitivity of next-generation sequencing. Molecular analyses determined the Uganda yellow fever outbreak was distinct from the concurrent yellow fever outbreak in Angola, improving our understanding of yellow fever epidemiology.In April 2016, a yellow fever outbreak was detected in Uganda. Removal of contaminating ribosomal RNA in a clinical sample improved the sensitivity of next-generation sequencing. Molecular analyses determined the Uganda yellow fever outbreak was distinct from the concurrent yellow fever outbreak in Angola, improving our understanding of yellow fever epidemiology. |
| Audience | Professional Academic |
| Author | Lutwama, Julius Kayiwa, John Mossel, Eric C. Hughes, Holly R. Staples, J. Erin Lambert, Amy J. |
| Author_xml | – sequence: 1 givenname: Holly R. surname: Hughes fullname: Hughes, Holly R. – sequence: 2 givenname: John surname: Kayiwa fullname: Kayiwa, John – sequence: 3 givenname: Eric C. surname: Mossel fullname: Mossel, Eric C. – sequence: 4 givenname: Julius surname: Lutwama fullname: Lutwama, Julius – sequence: 5 givenname: J. Erin surname: Staples fullname: Staples, J. Erin – sequence: 6 givenname: Amy J. surname: Lambert fullname: Lambert, Amy J. |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/29798746$$D View this record in MEDLINE/PubMed |
| BookMark | eNqNkttrFDEYxQep2Iu--igDgih01kxuk7wIpVhdKFTUFnwKuc6mzE7aZKba_96su64dWUHykJD8zvmSk--w2OtDb4vieQ1mCIL6rfUGYsBmNQOEsUfFQQ0YqCggfG-7xmC_OEzpGoA6S_iTYh_yhrMG04Oi-rS470Jr-_syuPKb7brwvTyzdzaWVz6O6bi8bGVv5HGZpfRp8djJLtlnm_mouDx7__X0Y3V-8WF-enJeaUrBUHGFOSQKaaYc4lARJJHDDhMiFa0Bb5pauYYyyp0hDFheKwZQwzFE2pCGoaNivvY1QV6Lm-iXMt6LIL34tRFiK2QcvO6sMFQZ7IAFkjLMmVI2v5owZBhlAEqdvd6tvW5GtbRG236IspuYTk96vxBtuBM5xHxZkg1ebwxiuB1tGsTSJ52Tkr0NYxIQYIIARQRm9OUabWW-mu9dyI56hYsTQmANOSEoU9UOKv-BzeXz9zqftyf8bAefh7FLr3cK3kwEmRnsj6GVY0pi_uXz_7MXV1P21QN2YWU3LFLoxsGHPk3BFw8z34b9u-_-PEnHkFK0bovUQKwaW2waW6wbOwvwXwLtB7kqnLPw3b9kPwFwBvO- |
| CitedBy_id | crossref_primary_10_1126_science_aau8225 crossref_primary_10_3390_ph14090891 crossref_primary_10_3390_genes9090425 crossref_primary_10_1016_j_ijid_2019_07_033 crossref_primary_10_1016_S1473_3099_19_30125_2 crossref_primary_10_1093_infdis_jiz302 crossref_primary_10_1038_s41467_024_45116_2 crossref_primary_10_1186_s12967_021_02747_z crossref_primary_10_1186_s42522_024_00103_x |
| Cites_doi | 10.1093/molbev/mss075 10.1186/s13059-014-0519-7 10.1128/JCM.01799-12 10.1016/S1286-4579(02)00028-X 10.3201/eid2210.160818 10.1128/JVI.75.15.6999-7008.2001 10.1016/j.virol.2017.09.022 |
| ContentType | Journal Article |
| Copyright | COPYRIGHT 2018 U.S. National Center for Infectious Diseases |
| Copyright_xml | – notice: COPYRIGHT 2018 U.S. National Center for Infectious Diseases |
| DBID | AAYXX CITATION NPM IOV ISR 7X8 5PM DOA |
| DOI | 10.3201/eid2408.180588 |
| DatabaseName | CrossRef PubMed Gale In Context: Opposing Viewpoints Gale In Context: Science MEDLINE - Academic PubMed Central (Full Participant titles) Directory of Open Access Journals |
| DatabaseTitle | CrossRef PubMed MEDLINE - Academic |
| DatabaseTitleList | PubMed MEDLINE - Academic |
| Database_xml | – sequence: 1 dbid: DOA name: DOAJ Directory of Open Access Journals url: https://www.doaj.org/ sourceTypes: Open Website – sequence: 2 dbid: NPM name: PubMed url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 3 dbid: 7X8 name: MEDLINE - Academic url: https://search.proquest.com/medline sourceTypes: Aggregation Database |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Public Health |
| DocumentTitleAlternate | Phylogeny of Yellow Fever Virus, Uganda, 2016 |
| EISSN | 1080-6059 |
| EndPage | 1599 |
| ExternalDocumentID | oai_doaj_org_article_d6bd4f0e0a68498bbe108583d86802ac PMC6056105 A552129553 29798746 10_3201_eid2408_180588 |
| Genre | Journal Article |
| GeographicLocations | Uganda Angola Africa |
| GeographicLocations_xml | – name: Africa – name: Uganda – name: Angola |
| GroupedDBID | --- -~X .GJ 186 29G 2WC 36B 53G 5GY 5VS 6PF 7RV 7X7 85S 8C1 8FI 8FJ 9K5 A8Z AAWTL AAYXX ABDBF ABUWG ACGFO ACUHS ADBBV ADRAZ AEGXH AENEX AETEA AEUYN AFFHD AFKRA AIAGR ALMA_UNASSIGNED_HOLDINGS AOIJS AZQEC B0M BAIFH BANNL BAWUL BBTPI BCNDV BENPR C1A CCPQU CITATION DIK DO4 E3Z EAD EAP EAS EBC EBD EBS EDH EJD EMB EMH EMI EMK EMOBN EPL EPT ESX F5P FRP FYUFA GROUPED_DOAJ GX1 HMCUK HYE IAO IBB IEA IEP IHR IHW IMI INH INR IOF IOV IPO ISR ITC K9- KQ8 M0R M48 NAPCQ NEJ O5R O5S OK1 OVT P2P PGMZT PHGZM PHGZT PJZUB PPXIY PV9 Q.E QF4 QM9 QN7 QO4 Q~Q RGD RGQ RNS RPM RXW RZL SV3 TAE TR2 TUS TWZ UKHRP UQL W2D WH7 WOQ WOW XSB YRT YV5 YXF ZBA ZGI ~8M 0ZS AAYOK ALIPV NPM XJT 7X8 ESTFP 5PM |
| ID | FETCH-LOGICAL-c660t-9b4925b3c8bf392b53a3f4f455ab6109771bf76869fd580e91b80379423cd5783 |
| IEDL.DBID | DOA |
| ISICitedReferencesCount | 8 |
| ISICitedReferencesURI | http://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=Summon&SrcAuth=ProQuest&DestLinkType=CitingArticles&DestApp=WOS_CPL&KeyUT=000439050300041&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D |
| ISSN | 1080-6040 1080-6059 |
| IngestDate | Fri Oct 03 12:41:56 EDT 2025 Tue Nov 04 01:59:53 EST 2025 Mon Sep 08 06:39:39 EDT 2025 Sat Nov 29 13:30:13 EST 2025 Sat Nov 29 11:36:26 EST 2025 Sat Nov 29 10:05:03 EST 2025 Wed Nov 26 08:56:43 EST 2025 Wed Nov 26 10:03:21 EST 2025 Thu May 22 21:22:29 EDT 2025 Thu Apr 03 07:02:03 EDT 2025 Tue Nov 18 22:00:36 EST 2025 Sat Nov 29 05:36:08 EST 2025 |
| IsDoiOpenAccess | true |
| IsOpenAccess | true |
| IsPeerReviewed | true |
| IsScholarly | true |
| Issue | 8 |
| Keywords | Kayiwa J Lutwama J Suggested citation for this article: Hughes HR Mossel EC Uganda 2016. Emerg Infect Dis. 2018 Aug [date cited]. https://doi.org/10.3201/eid2408.180588 Staples JE Lambert AJ. Phylogeny of yellow fever virus |
| Language | English |
| License | This is a publication of the U.S. Government. This publication is in the public domain and is therefore without copyright. All text from this work may be reprinted freely. Use of these materials should be properly cited. |
| LinkModel | DirectLink |
| MergedId | FETCHMERGED-LOGICAL-c660t-9b4925b3c8bf392b53a3f4f455ab6109771bf76869fd580e91b80379423cd5783 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
| OpenAccessLink | https://doaj.org/article/d6bd4f0e0a68498bbe108583d86802ac |
| PMID | 29798746 |
| PQID | 2045306352 |
| PQPubID | 23479 |
| PageCount | 2 |
| ParticipantIDs | doaj_primary_oai_doaj_org_article_d6bd4f0e0a68498bbe108583d86802ac pubmedcentral_primary_oai_pubmedcentral_nih_gov_6056105 proquest_miscellaneous_2045306352 gale_infotracmisc_A552129553 gale_infotracgeneralonefile_A552129553 gale_infotracacademiconefile_A552129553 gale_incontextgauss_ISR_A552129553 gale_incontextgauss_IOV_A552129553 gale_healthsolutions_A552129553 pubmed_primary_29798746 crossref_primary_10_3201_eid2408_180588 crossref_citationtrail_10_3201_eid2408_180588 |
| PublicationCentury | 2000 |
| PublicationDate | 2018-08-00 20180801 2018-08-01 |
| PublicationDateYYYYMMDD | 2018-08-01 |
| PublicationDate_xml | – month: 08 year: 2018 text: 2018-08-00 |
| PublicationDecade | 2010 |
| PublicationPlace | United States |
| PublicationPlace_xml | – name: United States |
| PublicationTitle | Emerging infectious diseases |
| PublicationTitleAlternate | Emerg Infect Dis |
| PublicationYear | 2018 |
| Publisher | U.S. National Center for Infectious Diseases Centers for Disease Control and Prevention |
| Publisher_xml | – name: U.S. National Center for Infectious Diseases – name: Centers for Disease Control and Prevention |
| References | Hughes (key-10.3201/eid2408.180588-201807171212-R7) 2017; 512 Mutebi (key-10.3201/eid2408.180588-201807171212-R2) 2001; 75 key-10.3201/eid2408.180588-201807171212-R5 key-10.3201/eid2408.180588-201807171212-R4 Mutebi (key-10.3201/eid2408.180588-201807171212-R1) 2002; 4 Domingo (key-10.3201/eid2408.180588-201807171212-R6) 2012; 50 Grobbelaar (key-10.3201/eid2408.180588-201807171212-R3) 2016; 22 Drummond (key-10.3201/eid2408.180588-201807171212-R9) 2012; 29 Matranga (key-10.3201/eid2408.180588-201807171212-R8) 2014; 15 |
| References_xml | – volume: 29 start-page: 1969 year: 2012 ident: key-10.3201/eid2408.180588-201807171212-R9 article-title: Bayesian phylogenetics with BEAUti and the BEAST 1.7. publication-title: Mol Biol Evol doi: 10.1093/molbev/mss075 – ident: key-10.3201/eid2408.180588-201807171212-R5 – ident: key-10.3201/eid2408.180588-201807171212-R4 – volume: 15 start-page: 519 year: 2014 ident: key-10.3201/eid2408.180588-201807171212-R8 article-title: Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples. publication-title: Genome Biol doi: 10.1186/s13059-014-0519-7 – volume: 50 start-page: 4054 year: 2012 ident: key-10.3201/eid2408.180588-201807171212-R6 article-title: Advanced yellow fever virus genome detection in point-of-care facilities and reference laboratories. publication-title: J Clin Microbiol doi: 10.1128/JCM.01799-12 – volume: 4 start-page: 1459 year: 2002 ident: key-10.3201/eid2408.180588-201807171212-R1 article-title: The epidemiology of yellow fever in Africa. publication-title: Microbes Infect doi: 10.1016/S1286-4579(02)00028-X – volume: 22 start-page: 1854 year: 2016 ident: key-10.3201/eid2408.180588-201807171212-R3 article-title: Resurgence of yellow fever in Angola, 2015–2016. publication-title: Emerg Infect Dis doi: 10.3201/eid2210.160818 – volume: 75 start-page: 6999 year: 2001 ident: key-10.3201/eid2408.180588-201807171212-R2 article-title: Phylogenetic and evolutionary relationships among yellow fever virus isolates in Africa. publication-title: J Virol doi: 10.1128/JVI.75.15.6999-7008.2001 – volume: 512 start-page: 201 year: 2017 ident: key-10.3201/eid2408.180588-201807171212-R7 article-title: Full genomic characterization of California serogroup viruses, genus Orthobunyavirus, family Peribunyaviridae including phylogenetic relationships. publication-title: Virology doi: 10.1016/j.virol.2017.09.022 |
| SSID | ssj0012019 |
| Score | 2.3155122 |
| Snippet | In April 2016, a yellow fever outbreak was detected in Uganda. Removal of contaminating ribosomal RNA in a clinical sample improved the sensitivity of... |
| SourceID | doaj pubmedcentral proquest gale pubmed crossref |
| SourceType | Open Website Open Access Repository Aggregation Database Index Database Enrichment Source |
| StartPage | 1598 |
| SubjectTerms | Analysis Epidemiology Health aspects Kayiwa J Lambert AJ. Phylogeny of yellow fever virus Lutwama J Mossel EC Phylogeny Phylogeny of Yellow Fever Virus, Uganda, 2016 Research Letter Ribosomal RNA Staples JE Suggested citation for this article: Hughes HR Yellow fever |
| Title | Phylogeny of Yellow Fever Virus, Uganda, 2016 |
| URI | https://www.ncbi.nlm.nih.gov/pubmed/29798746 https://www.proquest.com/docview/2045306352 https://pubmed.ncbi.nlm.nih.gov/PMC6056105 https://doaj.org/article/d6bd4f0e0a68498bbe108583d86802ac |
| Volume | 24 |
| WOSCitedRecordID | wos000439050300041&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| journalDatabaseRights | – providerCode: PRVAON databaseName: DOAJ Directory of Open Access Journals customDbUrl: eissn: 1080-6059 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0012019 issn: 1080-6040 databaseCode: DOA dateStart: 19950101 isFulltext: true titleUrlDefault: https://www.doaj.org/ providerName: Directory of Open Access Journals |
| link | http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV1Nb9QwELWg4oCEEN-kLSUgRC9N68TxR44FsQIJlQroajlZtmNvV0JZtNkF8e-ZibPLRoDgwDV-iZI343gmGb8h5JniAoLWvMykEiErjSszk4s6s4GG0qha0U6sevxWnp2pyaQ632r1hTVhUR44EndSC1uXgXpqhCorZa3HennFaiXgOsbh2xeinnUy1f8_gGWtiqX1kByBn0a5RgaHT_ysRlmv41xR3vVb-bkcdar9v76btxanYeHk1ko0ukVu9iFkehpv_Ta54ps75Eb8_pbGbUV3SXZ-Cak4eMf3dB7ST_iL5Vs68uC46Xi2WLVH6cUUPyIcpXC34h65GL36-PJ11rdGyJwQdJlVFkUFLXPKBohwLGeGhTKUnBuLAupS5jZAJiGqUHNFfZVbRRnMvYK5GiYpu092mnnjH5KUGw-2KiyDcyA2crY2XAZRBCULYShLSLZmSLteNxzbV3zWkD8go7pnVEdGE3K4wX-Jihl_RL5AwjcoVLruDoD9dW9__Tf7J-QxmkvHbaOb-apPOe5KrjiHB3jaIVDtosFymqlZta1-8278D6AP7wegwx4U5kCBM_0WBiASVbQGyOcD5DRqiP8OuD8AwuR2g-Enay_UOIQVcY2fr1qNbQQg3YP4OSEPolduiCwqWSlZioTIgb8OmB6ONLPLTltcYEZJ-e7_MM0euQ5GV7Fccp_sLBcr_4hcc1-Xs3ZxQK7KiTropu0P0Fo-Ig |
| linkProvider | Directory of Open Access Journals |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Phylogeny+of+Yellow+Fever+Virus%2C+Uganda%2C+2016&rft.jtitle=Emerging+infectious+diseases&rft.au=Hughes%2C+Holly+R&rft.au=Kayiwa%2C+John&rft.au=Mossel%2C+Eric+C&rft.au=Lutwama%2C+Julius&rft.date=2018-08-01&rft.issn=1080-6059&rft.eissn=1080-6059&rft.volume=24&rft.issue=8&rft_id=info:doi/10.3201%2Feid2408.180588&rft.externalDBID=NO_FULL_TEXT |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1080-6040&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1080-6040&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1080-6040&client=summon |