MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads

Background PacBio high fidelity (HiFi) sequencing reads are both long (15–20 kb) and highly accurate (> Q20). Because of these properties, they have revolutionised genome assembly leading to more accurate and contiguous genomes. In eukaryotes the mitochondrial genome is sequenced alongside the n...

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Bibliographic Details
Published in:	BMC bioinformatics Vol. 24; no. 1; pp. 288 - 13
Main Authors:	Uliano-Silva, Marcela, Ferreira, João Gabriel R. N., Krasheninnikova, Ksenia, Formenti, Giulio, Abueg, Linelle, Torrance, James, Myers, Eugene W., Durbin, Richard, Blaxter, Mark, McCarthy, Shane A.
Format:	Journal Article
Language:	English
Published:	London BioMed Central 18.07.2023 BioMed Central Ltd Springer Nature B.V BMC
Subjects:	Accuracy Algorithms Annotations Assembly Bats Biodiversity Bioinformatics Biomedical and Life Sciences Computational Biology/Bioinformatics Computer Appl. in Life Sciences DNA sequencing Docker Eukaryota Eukaryotes Fidelity Genes Genetic research Genome, Mitochondrial Genomes Genomics Heteroplasmy HiFi High-Throughput Nucleotide Sequencing Inspection Life Sciences Long reads Methods Microarrays Mitochondria Mitochondrial DNA Mitogenome MitoHiFi Nucleotide sequence Nucleotide sequencing Phylogeny Proteins Python (Programming language) RNA Sequence Analysis, DNA Software Symbiosis Transfer RNA Vertebrates United Kingdom Singularity MitoHiFi Docker Mitogenome Long reads Heteroplasmy HiFi DToL Python
ISSN:	1471-2105, 1471-2105
Online Access:	Get full text
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