Mash: fast genome and metagenome distance estimation using MinHash

Mash extends the MinHash dimensionality-reduction technique to include a pairwise mutation distance and P value significance test, enabling the efficient clustering and search of massive sequence collections. Mash reduces large sequences and sequence sets to small, representative sketches, from whic...

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Bibliographic Details
Published in:	Genome Biology Vol. 17; no. 1; p. 132
Main Authors:	Ondov, Brian D., Treangen, Todd J., Melsted, Páll, Mallonee, Adam B., Bergman, Nicholas H., Koren, Sergey, Phillippy, Adam M.
Format:	Journal Article
Language:	English
Published:	London BioMed Central 20.06.2016 Springer Nature B.V
Subjects:	Animal Genetics and Genomics Automation Bioinformatics Biomedical and Life Sciences Cluster Analysis Data collection Databases, Nucleic Acid Estimates Evolution, Molecular Evolutionary Biology Genome Genomes Genomics Genomics - methods Human Genetics Library collections Life Sciences mash Metagenome metagenomics Metagenomics - methods Microbial Genetics and Genomics Mutation nanopores Phylogeny Plant Genetics and Genomics Privacy Software Comparative genomics Metagenomics Alignment Nanopore Genomic distance Sequencing
ISSN:	1474-760X, 1474-7596, 1474-760X
Online Access:	Get full text
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