Transcriptome and metabolome analyses revealed the response mechanism of pepper roots to Phytophthora capsici infection
Background Phytophthora root rot caused by the oomycete Phytophthora capsici is the most devastating disease in pepper production worldwide, and current management strategies have not been effective in preventing this disease. Therefore, the use of resistant varieties was regarded as an important pa...
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| Vydáno v: | BMC genomics Ročník 24; číslo 1; s. 1 - 18 |
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| Jazyk: | angličtina |
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BioMed Central
20.10.2023
BioMed Central Ltd Springer Nature B.V BMC |
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| Abstract | Background
Phytophthora
root rot caused by the oomycete
Phytophthora capsici
is the most devastating disease in pepper production worldwide, and current management strategies have not been effective in preventing this disease. Therefore, the use of resistant varieties was regarded as an important part of disease management of
P. capsici
. However, our knowledge of the molecular mechanisms underlying the defense response of pepper roots to
P
.
capsici
infection is limited.
Methods
A comprehensive transcriptome and metabolome approaches were used to dissect the molecular response of pepper to
P
.
capsici
infection in the resistant genotype A204 and the susceptible genotype A198 at 0, 24 and 48 hours post-inoculation (hpi).
Results
More genes and metabolites were induced at 24 hpi in A204 than A198, suggesting the prompt activation of defense responses in the resistant genotype, which can attribute two proteases, subtilisin-like protease and xylem cysteine proteinase 1, involved in pathogen recognition and signal transduction in A204. Further analysis indicated that the resistant genotype responded to
P
.
capsici
with fine regulation by the Ca
2+
- and salicylic acid-mediated signaling pathways, and then activation of downstream defense responses, including cell wall reinforcement and defense-related genes expression and metabolites accumulation. Among them, differentially expressed genes and differentially accumulated metabolites involved in the flavonoid biosynthesis pathways were uniquely activated in the resistant genotype A204 at 24 hpi, indicating a significant role of the flavonoid biosynthesis pathways in pepper resistance to
P
.
capsici
.
Conclusion
The candidate transcripts may provide genetic resources that may be useful in the improvement of
Phytophthora
root rot-resistant characters of pepper. In addition, the model proposed in this study provides new insight into the defense response against
P. capsici
in pepper, and enhance our current understanding of the interaction of pepper–
P. capsici
. |
|---|---|
| AbstractList | Background
Phytophthora
root rot caused by the oomycete
Phytophthora capsici
is the most devastating disease in pepper production worldwide, and current management strategies have not been effective in preventing this disease. Therefore, the use of resistant varieties was regarded as an important part of disease management of
P. capsici
. However, our knowledge of the molecular mechanisms underlying the defense response of pepper roots to
P
.
capsici
infection is limited.
Methods
A comprehensive transcriptome and metabolome approaches were used to dissect the molecular response of pepper to
P
.
capsici
infection in the resistant genotype A204 and the susceptible genotype A198 at 0, 24 and 48 hours post-inoculation (hpi).
Results
More genes and metabolites were induced at 24 hpi in A204 than A198, suggesting the prompt activation of defense responses in the resistant genotype, which can attribute two proteases, subtilisin-like protease and xylem cysteine proteinase 1, involved in pathogen recognition and signal transduction in A204. Further analysis indicated that the resistant genotype responded to
P
.
capsici
with fine regulation by the Ca
2+
- and salicylic acid-mediated signaling pathways, and then activation of downstream defense responses, including cell wall reinforcement and defense-related genes expression and metabolites accumulation. Among them, differentially expressed genes and differentially accumulated metabolites involved in the flavonoid biosynthesis pathways were uniquely activated in the resistant genotype A204 at 24 hpi, indicating a significant role of the flavonoid biosynthesis pathways in pepper resistance to
P
.
capsici
.
Conclusion
The candidate transcripts may provide genetic resources that may be useful in the improvement of
Phytophthora
root rot-resistant characters of pepper. In addition, the model proposed in this study provides new insight into the defense response against
P. capsici
in pepper, and enhance our current understanding of the interaction of pepper–
P. capsici
. Phytophthora root rot caused by the oomycete Phytophthora capsici is the most devastating disease in pepper production worldwide, and current management strategies have not been effective in preventing this disease. Therefore, the use of resistant varieties was regarded as an important part of disease management of P. capsici. However, our knowledge of the molecular mechanisms underlying the defense response of pepper roots to P. capsici infection is limited.BACKGROUNDPhytophthora root rot caused by the oomycete Phytophthora capsici is the most devastating disease in pepper production worldwide, and current management strategies have not been effective in preventing this disease. Therefore, the use of resistant varieties was regarded as an important part of disease management of P. capsici. However, our knowledge of the molecular mechanisms underlying the defense response of pepper roots to P. capsici infection is limited.A comprehensive transcriptome and metabolome approaches were used to dissect the molecular response of pepper to P. capsici infection in the resistant genotype A204 and the susceptible genotype A198 at 0, 24 and 48 hours post-inoculation (hpi).METHODSA comprehensive transcriptome and metabolome approaches were used to dissect the molecular response of pepper to P. capsici infection in the resistant genotype A204 and the susceptible genotype A198 at 0, 24 and 48 hours post-inoculation (hpi).More genes and metabolites were induced at 24 hpi in A204 than A198, suggesting the prompt activation of defense responses in the resistant genotype, which can attribute two proteases, subtilisin-like protease and xylem cysteine proteinase 1, involved in pathogen recognition and signal transduction in A204. Further analysis indicated that the resistant genotype responded to P. capsici with fine regulation by the Ca2+- and salicylic acid-mediated signaling pathways, and then activation of downstream defense responses, including cell wall reinforcement and defense-related genes expression and metabolites accumulation. Among them, differentially expressed genes and differentially accumulated metabolites involved in the flavonoid biosynthesis pathways were uniquely activated in the resistant genotype A204 at 24 hpi, indicating a significant role of the flavonoid biosynthesis pathways in pepper resistance to P. capsici.RESULTSMore genes and metabolites were induced at 24 hpi in A204 than A198, suggesting the prompt activation of defense responses in the resistant genotype, which can attribute two proteases, subtilisin-like protease and xylem cysteine proteinase 1, involved in pathogen recognition and signal transduction in A204. Further analysis indicated that the resistant genotype responded to P. capsici with fine regulation by the Ca2+- and salicylic acid-mediated signaling pathways, and then activation of downstream defense responses, including cell wall reinforcement and defense-related genes expression and metabolites accumulation. Among them, differentially expressed genes and differentially accumulated metabolites involved in the flavonoid biosynthesis pathways were uniquely activated in the resistant genotype A204 at 24 hpi, indicating a significant role of the flavonoid biosynthesis pathways in pepper resistance to P. capsici.The candidate transcripts may provide genetic resources that may be useful in the improvement of Phytophthora root rot-resistant characters of pepper. In addition, the model proposed in this study provides new insight into the defense response against P. capsici in pepper, and enhance our current understanding of the interaction of pepper-P. capsici.CONCLUSIONThe candidate transcripts may provide genetic resources that may be useful in the improvement of Phytophthora root rot-resistant characters of pepper. In addition, the model proposed in this study provides new insight into the defense response against P. capsici in pepper, and enhance our current understanding of the interaction of pepper-P. capsici. BackgroundPhytophthora root rot caused by the oomycete Phytophthora capsici is the most devastating disease in pepper production worldwide, and current management strategies have not been effective in preventing this disease. Therefore, the use of resistant varieties was regarded as an important part of disease management of P. capsici. However, our knowledge of the molecular mechanisms underlying the defense response of pepper roots to P. capsici infection is limited.MethodsA comprehensive transcriptome and metabolome approaches were used to dissect the molecular response of pepper to P. capsici infection in the resistant genotype A204 and the susceptible genotype A198 at 0, 24 and 48 hours post-inoculation (hpi).ResultsMore genes and metabolites were induced at 24 hpi in A204 than A198, suggesting the prompt activation of defense responses in the resistant genotype, which can attribute two proteases, subtilisin-like protease and xylem cysteine proteinase 1, involved in pathogen recognition and signal transduction in A204. Further analysis indicated that the resistant genotype responded to P. capsici with fine regulation by the Ca2+- and salicylic acid-mediated signaling pathways, and then activation of downstream defense responses, including cell wall reinforcement and defense-related genes expression and metabolites accumulation. Among them, differentially expressed genes and differentially accumulated metabolites involved in the flavonoid biosynthesis pathways were uniquely activated in the resistant genotype A204 at 24 hpi, indicating a significant role of the flavonoid biosynthesis pathways in pepper resistance to P. capsici.ConclusionThe candidate transcripts may provide genetic resources that may be useful in the improvement of Phytophthora root rot-resistant characters of pepper. In addition, the model proposed in this study provides new insight into the defense response against P. capsici in pepper, and enhance our current understanding of the interaction of pepper–P. capsici. Phytophthora root rot caused by the oomycete Phytophthora capsici is the most devastating disease in pepper production worldwide, and current management strategies have not been effective in preventing this disease. Therefore, the use of resistant varieties was regarded as an important part of disease management of P. capsici. However, our knowledge of the molecular mechanisms underlying the defense response of pepper roots to P. capsici infection is limited. A comprehensive transcriptome and metabolome approaches were used to dissect the molecular response of pepper to P. capsici infection in the resistant genotype A204 and the susceptible genotype A198 at 0, 24 and 48 hours post-inoculation (hpi). More genes and metabolites were induced at 24 hpi in A204 than A198, suggesting the prompt activation of defense responses in the resistant genotype, which can attribute two proteases, subtilisin-like protease and xylem cysteine proteinase 1, involved in pathogen recognition and signal transduction in A204. Further analysis indicated that the resistant genotype responded to P. capsici with fine regulation by the Ca.sup.2+- and salicylic acid-mediated signaling pathways, and then activation of downstream defense responses, including cell wall reinforcement and defense-related genes expression and metabolites accumulation. Among them, differentially expressed genes and differentially accumulated metabolites involved in the flavonoid biosynthesis pathways were uniquely activated in the resistant genotype A204 at 24 hpi, indicating a significant role of the flavonoid biosynthesis pathways in pepper resistance to P. capsici. The candidate transcripts may provide genetic resources that may be useful in the improvement of Phytophthora root rot-resistant characters of pepper. In addition, the model proposed in this study provides new insight into the defense response against P. capsici in pepper, and enhance our current understanding of the interaction of pepper-P. capsici. Background Phytophthora root rot caused by the oomycete Phytophthora capsici is the most devastating disease in pepper production worldwide, and current management strategies have not been effective in preventing this disease. Therefore, the use of resistant varieties was regarded as an important part of disease management of P. capsici. However, our knowledge of the molecular mechanisms underlying the defense response of pepper roots to P. capsici infection is limited. Methods A comprehensive transcriptome and metabolome approaches were used to dissect the molecular response of pepper to P. capsici infection in the resistant genotype A204 and the susceptible genotype A198 at 0, 24 and 48 hours post-inoculation (hpi). Results More genes and metabolites were induced at 24 hpi in A204 than A198, suggesting the prompt activation of defense responses in the resistant genotype, which can attribute two proteases, subtilisin-like protease and xylem cysteine proteinase 1, involved in pathogen recognition and signal transduction in A204. Further analysis indicated that the resistant genotype responded to P. capsici with fine regulation by the Ca.sup.2+- and salicylic acid-mediated signaling pathways, and then activation of downstream defense responses, including cell wall reinforcement and defense-related genes expression and metabolites accumulation. Among them, differentially expressed genes and differentially accumulated metabolites involved in the flavonoid biosynthesis pathways were uniquely activated in the resistant genotype A204 at 24 hpi, indicating a significant role of the flavonoid biosynthesis pathways in pepper resistance to P. capsici. Conclusion The candidate transcripts may provide genetic resources that may be useful in the improvement of Phytophthora root rot-resistant characters of pepper. In addition, the model proposed in this study provides new insight into the defense response against P. capsici in pepper, and enhance our current understanding of the interaction of pepper-P. capsici. Keywords: Capsicum annuum, Phytophthora capsici, Transcriptome, Metabolome, Salicylic acid, Ca.sup.2+, Flavonoid biosynthesis pathways Abstract Background Phytophthora root rot caused by the oomycete Phytophthora capsici is the most devastating disease in pepper production worldwide, and current management strategies have not been effective in preventing this disease. Therefore, the use of resistant varieties was regarded as an important part of disease management of P. capsici. However, our knowledge of the molecular mechanisms underlying the defense response of pepper roots to P. capsici infection is limited. Methods A comprehensive transcriptome and metabolome approaches were used to dissect the molecular response of pepper to P. capsici infection in the resistant genotype A204 and the susceptible genotype A198 at 0, 24 and 48 hours post-inoculation (hpi). Results More genes and metabolites were induced at 24 hpi in A204 than A198, suggesting the prompt activation of defense responses in the resistant genotype, which can attribute two proteases, subtilisin-like protease and xylem cysteine proteinase 1, involved in pathogen recognition and signal transduction in A204. Further analysis indicated that the resistant genotype responded to P. capsici with fine regulation by the Ca2+- and salicylic acid-mediated signaling pathways, and then activation of downstream defense responses, including cell wall reinforcement and defense-related genes expression and metabolites accumulation. Among them, differentially expressed genes and differentially accumulated metabolites involved in the flavonoid biosynthesis pathways were uniquely activated in the resistant genotype A204 at 24 hpi, indicating a significant role of the flavonoid biosynthesis pathways in pepper resistance to P. capsici. Conclusion The candidate transcripts may provide genetic resources that may be useful in the improvement of Phytophthora root rot-resistant characters of pepper. In addition, the model proposed in this study provides new insight into the defense response against P. capsici in pepper, and enhance our current understanding of the interaction of pepper–P. capsici. |
| ArticleNumber | 626 |
| Audience | Academic |
| Author | Huang, Yue-Qin Lei, Gang Yuan, Xin-Jie Chen, Xue-Jun Fang, Rong Li, Ge-Ge Xie, Yuan-Yuan Zhou, Kun-Hua |
| Author_xml | – sequence: 1 givenname: Gang surname: Lei fullname: Lei, Gang organization: Institute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences – sequence: 2 givenname: Kun-Hua surname: Zhou fullname: Zhou, Kun-Hua organization: Institute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences – sequence: 3 givenname: Xue-Jun surname: Chen fullname: Chen, Xue-Jun organization: Institute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences – sequence: 4 givenname: Yue-Qin surname: Huang fullname: Huang, Yue-Qin organization: Institute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences – sequence: 5 givenname: Xin-Jie surname: Yuan fullname: Yuan, Xin-Jie organization: Institute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences – sequence: 6 givenname: Ge-Ge surname: Li fullname: Li, Ge-Ge organization: Institute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences – sequence: 7 givenname: Yuan-Yuan surname: Xie fullname: Xie, Yuan-Yuan organization: Institute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences – sequence: 8 givenname: Rong surname: Fang fullname: Fang, Rong email: fangrong2020@163.com organization: Institute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences |
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| Keywords | Metabolome Salicylic acid Ca Transcriptome Flavonoid biosynthesis pathways |
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| Snippet | Background
Phytophthora
root rot caused by the oomycete
Phytophthora capsici
is the most devastating disease in pepper production worldwide, and current... Phytophthora root rot caused by the oomycete Phytophthora capsici is the most devastating disease in pepper production worldwide, and current management... Background Phytophthora root rot caused by the oomycete Phytophthora capsici is the most devastating disease in pepper production worldwide, and current... BackgroundPhytophthora root rot caused by the oomycete Phytophthora capsici is the most devastating disease in pepper production worldwide, and current... Abstract Background Phytophthora root rot caused by the oomycete Phytophthora capsici is the most devastating disease in pepper production worldwide, and... |
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| SubjectTerms | Animal Genetics and Genomics Biomedical and Life Sciences Biosynthesis Ca2 Calcium ions Capsicum annuum Cell death Cell walls Control Cysteine proteinase Disease Diseases and pests Flavonoids Gene expression Genes Genetic aspects Genetic engineering Genetic resources Genomics Genotype & phenotype Genotypes Infections Inoculation Kinases Life Sciences Metabolism Metabolites Metabolome Metabolomics Methods Microarrays Microbial Genetics and Genomics Molecular modelling Pathogens Peppers Phytophthora Phytophthora capsici Phytophthora diseases Plant Genetics and Genomics Plant immunology Plant resistance Proteinase Proteinase 1 Proteins Proteomics RNA sequencing Root rot Roots Salicylic acid Signal transduction Subtilisin Transcriptome Transcriptomes Vegetables Xylem |
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| Title | Transcriptome and metabolome analyses revealed the response mechanism of pepper roots to Phytophthora capsici infection |
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