Rfold: an exact algorithm for computing local base pairing probabilities

Motivation: Base pairing probability matrices have been frequently used for the analyses of structural RNA sequences. Recently, there has been a growing need for computing these probabilities for long DNA sequences by constraining the maximal span of base pairs to a limited value. However, none of t...

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Veröffentlicht in:	Bioinformatics Jg. 24; H. 3; S. 367 - 373
Hauptverfasser:	Kiryu, Hisanori, Kin, Taishin, Asai, Kiyoshi
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	Oxford Oxford University Press 01.02.2008 Oxford Publishing Limited (England)
Schlagworte:	Algorithms Base Pairing - genetics Base Sequence Bioinformatics Biological and medical sciences Computer Simulation Fundamental and applied biological sciences. Psychology General aspects Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Models, Chemical Models, Genetic Models, Statistical Molecular Sequence Data RNA, Untranslated - chemistry RNA, Untranslated - genetics Sequence Analysis, RNA - methods Software Probability Algorithm Pairing Bioinformatics
ISSN:	1367-4803, 1367-4811, 1460-2059, 1367-4811
Online-Zugang:	Volltext
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