Wavelet‐Based Clustering for Mixed‐Effects Functional Models in High Dimension

We propose a method for high‐dimensional curve clustering in the presence of interindividual variability. Curve clustering has longly been studied especially using splines to account for functional random effects. However, splines are not appropriate when dealing with high‐dimensional data and can n...

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Podrobná bibliografie
Vydáno v:	Biometrics Ročník 69; číslo 1; s. 31 - 40
Hlavní autoři:	Giacofci, M, Lambert‐Lacroix, S, Marot, G, Picard, F
Médium:	Journal Article
Jazyk:	angličtina
Vydáno:	United States Blackwell Publishers 01.03.2013 Blackwell Publishing Ltd Wiley-Blackwell Wiley
Témata:	Algorithms Applications BIOMETRIC METHODOLOGY Biometrics biometry Cluster Analysis Clustering Comparative genomic hybridization Comparative Genomic Hybridization - methods Computer Simulation Data Interpretation, Statistical Datasets Dimensionality reduction Female Functional data Genomics High dimensional spaces Humans Hybridization Likelihood Functions Mass Spectrometry Mass spectroscopy Methodology microarray technology Mixed models Models, Statistical Ovarian Neoplasms - genetics Signals Simulations Statistical variance Statistics Trucks variance wavelet Wavelet transforms Wavelets Wavelets Functional data Clustering Mixed models
ISSN:	0006-341X, 1541-0420, 1541-0420
On-line přístup:	Získat plný text
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Popis
Shrnutí:	We propose a method for high‐dimensional curve clustering in the presence of interindividual variability. Curve clustering has longly been studied especially using splines to account for functional random effects. However, splines are not appropriate when dealing with high‐dimensional data and can not be used to model irregular curves such as peak‐like data. Our method is based on a wavelet decomposition of the signal for both fixed and random effects. We propose an efficient dimension reduction step based on wavelet thresholding adapted to multiple curves and using an appropriate structure for the random effect variance, we ensure that both fixed and random effects lie in the same functional space even when dealing with irregular functions that belong to Besov spaces. In the wavelet domain our model resumes to a linear mixed‐effects model that can be used for a model‐based clustering algorithm and for which we develop an EM‐algorithm for maximum likelihood estimation. The properties of the overall procedure are validated by an extensive simulation study. Then, we illustrate our method on mass spectrometry data and we propose an original application of functional data analysis on microarray comparative genomic hybridization (CGH) data. Our procedure is available through the R package curvclust which is the first publicly available package that performs curve clustering with random effects in the high dimensional framework (available on the CRAN).
Bibliografie:	http://dx.doi.org/10.1111/j.1541-0420.2012.01828.x ArticleID:BIOM1828 istex:DA46C681F00076E867D547AA2D796B94FAD29CB6 ark:/67375/WNG-18SRBLZ3-B SourceType-Scholarly Journals-1 ObjectType-Feature-1 content type line 14 ObjectType-Article-1 ObjectType-Feature-2 content type line 23
ISSN:	0006-341X 1541-0420 1541-0420
DOI:	10.1111/j.1541-0420.2012.01828.x