Inventory of molecular markers affecting biological characteristics of avian influenza A viruses

Avian influenza viruses (AIVs) circulate globally, spilling over into domestic poultry and causing zoonotic infections in humans. Fortunately, AIVs are not yet capable of causing sustained human-to-human infection; however, AIVs are still a high risk as future pandemic strains, especially if they ac...

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Vydané v:Virus genes Ročník 55; číslo 6; s. 739 - 768
Hlavní autori: Suttie, Annika, Deng, Yi-Mo, Greenhill, Andrew R., Dussart, Philippe, Horwood, Paul F., Karlsson, Erik A.
Médium: Journal Article
Jazyk:English
Vydavateľské údaje: New York Springer US 01.12.2019
Springer Nature B.V
Springer Verlag
Predmet:
Animals
Avian flu
avian influenza
Biochemistry, Molecular Biology
Biomarkers
Biomedical and Life Sciences
Biomedicine
Birds
Birds - genetics
Birds - virology
Drug Resistance, Viral
Drug Resistance, Viral - genetics
Genetic Markers
Genetic Markers - genetics
Humans
Influenza
Influenza A
Influenza A virus
Influenza A Virus, H5N1 Subtype
Influenza A Virus, H5N1 Subtype - genetics
Influenza A Virus, H5N1 Subtype - pathogenicity
Influenza A Virus, H7N9 Subtype
Influenza A Virus, H7N9 Subtype - genetics
Influenza A Virus, H7N9 Subtype - pathogenicity
Influenza in Birds
Influenza in Birds - epidemiology
Influenza in Birds - genetics
Influenza in Birds - virology
Influenza, Human
Influenza, Human - genetics
Influenza, Human - virology
Life Sciences
mammals
Medical Microbiology
Microbiology and Parasitology
mutation
pandemic
Pandemics
pathogenesis
Pathogenicity
Plant Sciences
Poultry
Poultry - genetics
Poultry - virology
Review Paper
risk
Virology
Zoonoses
Zoonoses - genetics
Zoonoses - virology
Avian influenza
Molecular marker
Mutation
Influenza virus
Risk assessment
Molecular inventory
ISSN:0920-8569, 1572-994X, 1572-994X
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Abstract Avian influenza viruses (AIVs) circulate globally, spilling over into domestic poultry and causing zoonotic infections in humans. Fortunately, AIVs are not yet capable of causing sustained human-to-human infection; however, AIVs are still a high risk as future pandemic strains, especially if they acquire further mutations that facilitate human infection and/or increase pathogenesis. Molecular characterization of sequencing data for known genetic markers associated with AIV adaptation, transmission, and antiviral resistance allows for fast, efficient assessment of AIV risk. Here we summarize and update the current knowledge on experimentally verified molecular markers involved in AIV pathogenicity, receptor binding, replicative capacity, and transmission in both poultry and mammals with a broad focus to include data available on other AIV subtypes outside of A/H5N1 and A/H7N9.
AbstractList Avian influenza viruses (AIVs) circulate globally, spilling over into domestic poultry and causing zoonotic infections in humans. Fortunately, AIVs are not yet capable of causing sustained human-to-human infection; however, AIVs are still a high risk as future pandemic strains, especially if they acquire further mutations that facilitate human infection and/or increase pathogenesis. Molecular characterization of sequencing data for known genetic markers associated with AIV adaptation, transmission, and antiviral resistance allows for fast, efficient assessment of AIV risk. Here we summarize and update the current knowledge on experimentally verified molecular markers involved in AIV pathogenicity, receptor binding, replicative capacity, and transmission in both poultry and mammals with a broad focus to include data available on other AIV subtypes outside of A/H5N1 and A/H7N9.
Avian influenza viruses (AIVs) circulate globally, spilling over into domestic poultry and causing zoonotic infections in humans. Fortunately, AIVs are not yet capable of causing sustained human-to-human infection; however, AIVs are still a high risk as future pandemic strains, especially if they acquire further mutations that facilitate human infection and/or increase pathogenesis. Molecular characterization of sequencing data for known genetic markers associated with AIV adaptation, transmission, and antiviral resistance allows for fast, efficient assessment of AIV risk. Here we summarize and update the current knowledge on experimentally verified molecular markers involved in AIV pathogenicity, receptor binding, replicative capacity, and transmission in both poultry and mammals with a broad focus to include data available on other AIV subtypes outside of A/H5N1 and A/H7N9.Avian influenza viruses (AIVs) circulate globally, spilling over into domestic poultry and causing zoonotic infections in humans. Fortunately, AIVs are not yet capable of causing sustained human-to-human infection; however, AIVs are still a high risk as future pandemic strains, especially if they acquire further mutations that facilitate human infection and/or increase pathogenesis. Molecular characterization of sequencing data for known genetic markers associated with AIV adaptation, transmission, and antiviral resistance allows for fast, efficient assessment of AIV risk. Here we summarize and update the current knowledge on experimentally verified molecular markers involved in AIV pathogenicity, receptor binding, replicative capacity, and transmission in both poultry and mammals with a broad focus to include data available on other AIV subtypes outside of A/H5N1 and A/H7N9.
Author Suttie, Annika
Karlsson, Erik A.
Deng, Yi-Mo
Dussart, Philippe
Horwood, Paul F.
Greenhill, Andrew R.
Author_xml – sequence: 1
  givenname: Annika
  surname: Suttie
  fullname: Suttie, Annika
  organization: Virology Unit, Institut Pasteur du Cambodge, Institut Pasteur International Network, School of Health and Life Sciences, Federation University, World Health Organization Collaborating Centre for Reference and Research on Influenza, Peter Doherty Institute for Infection and Immunity
– sequence: 2
  givenname: Yi-Mo
  surname: Deng
  fullname: Deng, Yi-Mo
  organization: World Health Organization Collaborating Centre for Reference and Research on Influenza, Peter Doherty Institute for Infection and Immunity
– sequence: 3
  givenname: Andrew R.
  surname: Greenhill
  fullname: Greenhill, Andrew R.
  organization: School of Health and Life Sciences, Federation University
– sequence: 4
  givenname: Philippe
  surname: Dussart
  fullname: Dussart, Philippe
  organization: Virology Unit, Institut Pasteur du Cambodge, Institut Pasteur International Network
– sequence: 5
  givenname: Paul F.
  surname: Horwood
  fullname: Horwood, Paul F.
  organization: College of Public Health, Medical and Veterinary Sciences, James Cook University
– sequence: 6
  givenname: Erik A.
  orcidid: 0000-0001-6004-5671
  surname: Karlsson
  fullname: Karlsson, Erik A.
  email: ekarlsson@pasteur-kh.org
  organization: Virology Unit, Institut Pasteur du Cambodge, Institut Pasteur International Network
BackLink https://www.ncbi.nlm.nih.gov/pubmed/31428925$$D View this record in MEDLINE/PubMed
https://riip.hal.science/pasteur-03214753$$DView record in HAL
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Virus Genes is a copyright of Springer, (2019). All Rights Reserved. © 2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
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Issue 6
Keywords Avian influenza
Molecular marker
Mutation
Influenza virus
Risk assessment
Molecular inventory
Language English
License Attribution: http://creativecommons.org/licenses/by
Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
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PublicationTitle Virus genes
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SubjectTerms Animals
Avian flu
avian influenza
Biochemistry, Molecular Biology
Biomarkers
Biomedical and Life Sciences
Biomedicine
Birds
Birds - genetics
Birds - virology
Drug Resistance, Viral
Drug Resistance, Viral - genetics
Genetic Markers
Genetic Markers - genetics
Humans
Influenza
Influenza A
Influenza A virus
Influenza A Virus, H5N1 Subtype
Influenza A Virus, H5N1 Subtype - genetics
Influenza A Virus, H5N1 Subtype - pathogenicity
Influenza A Virus, H7N9 Subtype
Influenza A Virus, H7N9 Subtype - genetics
Influenza A Virus, H7N9 Subtype - pathogenicity
Influenza in Birds
Influenza in Birds - epidemiology
Influenza in Birds - genetics
Influenza in Birds - virology
Influenza, Human
Influenza, Human - genetics
Influenza, Human - virology
Life Sciences
mammals
Medical Microbiology
Microbiology and Parasitology
mutation
pandemic
Pandemics
pathogenesis
Pathogenicity
Plant Sciences
Poultry
Poultry - genetics
Poultry - virology
Review Paper
risk
Virology
Zoonoses
Zoonoses - genetics
Zoonoses - virology
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