New dimensions of the virus world discovered through metagenomics
Metagenomic analysis of viruses suggests novel patterns of evolution, changes the existing ideas of the composition of the virus world and reveals novel groups of viruses and virus-like agents. The gene composition of the marine DNA virome is dramatically different from that of known bacteriophages....
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| Vydáno v: | Trends in microbiology (Regular ed.) Ročník 18; číslo 1; s. 11 - 19 |
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| Hlavní autoři: | , , , |
| Médium: | Journal Article |
| Jazyk: | angličtina |
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England
Elsevier Ltd
01.01.2010
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| ISSN: | 0966-842X, 1878-4380, 1878-4380 |
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| Abstract | Metagenomic analysis of viruses suggests novel patterns of evolution, changes the existing ideas of the composition of the virus world and reveals novel groups of viruses and virus-like agents. The gene composition of the marine DNA virome is dramatically different from that of known bacteriophages. The virome is dominated by rare genes, many of which might be contained within virus-like entities such as gene transfer agents. Analysis of marine metagenomes thought to consist mostly of bacterial genes revealed a variety of sequences homologous to conserved genes of eukaryotic nucleocytoplasmic large DNA viruses, resulting in the discovery of diverse members of previously undersampled groups and suggesting the existence of new classes of virus-like agents. Unexpectedly, metagenomics of marine RNA viruses showed that representatives of only one superfamily of eukaryotic viruses, the picorna-like viruses, dominate the RNA virome. |
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| AbstractList | Metagenomic analysis of viruses suggests novel patterns of evolution, changes the existing ideas of the composition of the virus world and reveals novel groups of viruses and virus-like agents. The gene composition of the marine DNA virome is dramatically different from that of known bacteriophages. The virome is dominated by rare genes, many of which might be contained within virus-like entities such as gene transfer agents. Analysis of marine metagenomes thought to consist mostly of bacterial genes revealed a variety of sequences homologous to conserved genes of eukaryotic nucleocytoplasmic large DNA viruses, resulting in the discovery of diverse members of previously undersampled groups and suggesting the existence of new classes of virus-like agents. Unexpectedly, metagenomics of marine RNA viruses showed that representatives of only one superfamily of eukaryotic viruses, the picorna-like viruses, dominate the RNA virome. Metagenomic analysis of viruses suggests novel patterns of evolution, changes the existing ideas of the composition of the virus world and reveals novel groups of viruses and virus-like agents. The gene composition of the marine DNA virome is dramatically different from that of known bacteriophages. The virome is dominated by rare genes, many of which might be contained within virus-like entities such as gene transfer agents. Analysis of marine metagenomes thought to consist mostly of bacterial genes revealed a variety of sequences homologous to conserved genes of eukaryotic nucleocytoplasmic large DNA viruses, resulting in the discovery of diverse members of previously undersampled groups and suggesting the existence of new classes of virus-like agents. Unexpectedly, metagenomics of marine RNA viruses showed that representatives of only one superfamily of eukaryotic viruses, the picorna-like viruses, dominate the RNA virome.Metagenomic analysis of viruses suggests novel patterns of evolution, changes the existing ideas of the composition of the virus world and reveals novel groups of viruses and virus-like agents. The gene composition of the marine DNA virome is dramatically different from that of known bacteriophages. The virome is dominated by rare genes, many of which might be contained within virus-like entities such as gene transfer agents. Analysis of marine metagenomes thought to consist mostly of bacterial genes revealed a variety of sequences homologous to conserved genes of eukaryotic nucleocytoplasmic large DNA viruses, resulting in the discovery of diverse members of previously undersampled groups and suggesting the existence of new classes of virus-like agents. Unexpectedly, metagenomics of marine RNA viruses showed that representatives of only one superfamily of eukaryotic viruses, the picorna-like viruses, dominate the RNA virome. |
| Author | Koonin, Eugene V. Dolja, Valerian V. Mushegian, Arcady R. Kristensen, David M. |
| AuthorAffiliation | 2 Department of Microbiology, Molecular Genetics and Immunology, Kansas University Medical Center, Kansas City, KS 66160, USA 3 Department of Botany and Plant Pathology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR 97331, USA 1 Stowers Institute of Medical Research, Kansas City, MO 64110, USA 4 National Center for Biotechnology Information, National Institutes of Health, Bethesda, MD 20894, USA |
| AuthorAffiliation_xml | – name: 3 Department of Botany and Plant Pathology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR 97331, USA – name: 1 Stowers Institute of Medical Research, Kansas City, MO 64110, USA – name: 4 National Center for Biotechnology Information, National Institutes of Health, Bethesda, MD 20894, USA – name: 2 Department of Microbiology, Molecular Genetics and Immunology, Kansas University Medical Center, Kansas City, KS 66160, USA |
| Author_xml | – sequence: 1 givenname: David M. surname: Kristensen fullname: Kristensen, David M. organization: Stowers Institute of Medical Research, Kansas City, MO 64110, USA – sequence: 2 givenname: Arcady R. surname: Mushegian fullname: Mushegian, Arcady R. organization: Stowers Institute of Medical Research, Kansas City, MO 64110, USA – sequence: 3 givenname: Valerian V. surname: Dolja fullname: Dolja, Valerian V. organization: Department of Botany and Plant Pathology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR 97331, USA – sequence: 4 givenname: Eugene V. surname: Koonin fullname: Koonin, Eugene V. email: koonin@ncbi.nlm.nih.gov organization: National Center for Biotechnology Information, National Institutes of Health, Bethesda, MD 20894, USA |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/19942437$$D View this record in MEDLINE/PubMed |
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| Publisher | Elsevier Ltd |
| Publisher_xml | – name: Elsevier Ltd |
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| Title | New dimensions of the virus world discovered through metagenomics |
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