Genetic consequences of breaking migratory traditions in barnacle geese Branta leucopsis
Cultural transmission of migratory traditions enables species to deal with their environment based on experiences from earlier generations. Also, it allows a more adequate and rapid response to rapidly changing environments. When individuals break with their migratory traditions, new population stru...
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| Vydané v: | Molecular ecology Ročník 22; číslo 23; s. 5835 - 5847 |
|---|---|
| Hlavní autori: | , , , , , , , , , , , , |
| Médium: | Journal Article |
| Jazyk: | English |
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Oxford
Blackwell Publishing Ltd
01.12.2013
Blackwell |
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| ISSN: | 0962-1083, 1365-294X, 1365-294X |
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| Abstract | Cultural transmission of migratory traditions enables species to deal with their environment based on experiences from earlier generations. Also, it allows a more adequate and rapid response to rapidly changing environments. When individuals break with their migratory traditions, new population structures can emerge that may affect gene flow. Recently, the migratory traditions of the Barnacle Goose Branta leucopsis changed, and new populations differing in migratory distance emerged. Here, we investigate the population genetic structure of the Barnacle Goose to evaluate the consequences of altered migratory traditions. We used a set of 358 single nucleotide polymorphism (SNP) markers to genotype 418 individuals from breeding populations in Greenland, Spitsbergen, Russia, Sweden and the Netherlands, the latter two being newly emerged populations. We used discriminant analysis of principal components, FST, linkage disequilibrium and a comparison of geneflow models using migrate‐n to show that there is significant population structure, but that relatively many pairs of SNPs are in linkage disequilibrium, suggesting recent admixture between these populations. Despite the assumed traditions of migration within populations, we also show that genetic exchange occurs between all populations. The newly established nonmigratory population in the Netherlands is characterized by high emigration into other populations, which suggests more exploratory behaviour, possibly as a result of shortened parental care. These results suggest that migratory traditions in populations are subject to change in geese and that such changes have population genetic consequences. We argue that the emergence of nonmigration probably resulted from developmental plasticity. |
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| AbstractList | Cultural transmission of migratory traditions enables species to deal with their environment based on experiences from earlier generations. Also, it allows a more adequate and rapid response to rapidly changing environments. When individuals break with their migratory traditions, new population structures can emerge that may affect gene flow. Recently, the migratory traditions of the Barnacle Goose Branta leucopsis changed, and new populations differing in migratory distance emerged. Here, we investigate the population genetic structure of the Barnacle Goose to evaluate the consequences of altered migratory traditions. We used a set of 358 single nucleotide polymorphism (SNP) markers to genotype 418 individuals from breeding populations in Greenland, Spitsbergen, Russia, Sweden and the Netherlands, the latter two being newly emerged populations. We used discriminant analysis of principal components, FST , linkage disequilibrium and a comparison of geneflow models using migrate-n to show that there is significant population structure, but that relatively many pairs of SNPs are in linkage disequilibrium, suggesting recent admixture between these populations. Despite the assumed traditions of migration within populations, we also show that genetic exchange occurs between all populations. The newly established nonmigratory population in the Netherlands is characterized by high emigration into other populations, which suggests more exploratory behaviour, possibly as a result of shortened parental care. These results suggest that migratory traditions in populations are subject to change in geese and that such changes have population genetic consequences. We argue that the emergence of nonmigration probably resulted from developmental plasticity. Cultural transmission of migratory traditions enables species to deal with their environment based on experiences from earlier generations. Also, it allows a more adequate and rapid response to rapidly changing environments. When individuals break with their migratory traditions, new population structures can emerge that may affect gene flow. Recently, the migratory traditions of the Barnacle Goose Branta leucopsis changed, and new populations differing in migratory distance emerged. Here, we investigate the population genetic structure of the Barnacle Goose to evaluate the consequences of altered migratory traditions. We used a set of 358 single nucleotide polymorphism (SNP) markers to genotype 418 individuals from breeding populations in Greenland, Spitsbergen, Russia, Sweden and the Netherlands, the latter two being newly emerged populations. We used discriminant analysis of principal components, FST , linkage disequilibrium and a comparison of geneflow models using migrate-n to show that there is significant population structure, but that relatively many pairs of SNPs are in linkage disequilibrium, suggesting recent admixture between these populations. Despite the assumed traditions of migration within populations, we also show that genetic exchange occurs between all populations. The newly established nonmigratory population in the Netherlands is characterized by high emigration into other populations, which suggests more exploratory behaviour, possibly as a result of shortened parental care. These results suggest that migratory traditions in populations are subject to change in geese and that such changes have population genetic consequences. We argue that the emergence of nonmigration probably resulted from developmental plasticity.Cultural transmission of migratory traditions enables species to deal with their environment based on experiences from earlier generations. Also, it allows a more adequate and rapid response to rapidly changing environments. When individuals break with their migratory traditions, new population structures can emerge that may affect gene flow. Recently, the migratory traditions of the Barnacle Goose Branta leucopsis changed, and new populations differing in migratory distance emerged. Here, we investigate the population genetic structure of the Barnacle Goose to evaluate the consequences of altered migratory traditions. We used a set of 358 single nucleotide polymorphism (SNP) markers to genotype 418 individuals from breeding populations in Greenland, Spitsbergen, Russia, Sweden and the Netherlands, the latter two being newly emerged populations. We used discriminant analysis of principal components, FST , linkage disequilibrium and a comparison of geneflow models using migrate-n to show that there is significant population structure, but that relatively many pairs of SNPs are in linkage disequilibrium, suggesting recent admixture between these populations. Despite the assumed traditions of migration within populations, we also show that genetic exchange occurs between all populations. The newly established nonmigratory population in the Netherlands is characterized by high emigration into other populations, which suggests more exploratory behaviour, possibly as a result of shortened parental care. These results suggest that migratory traditions in populations are subject to change in geese and that such changes have population genetic consequences. We argue that the emergence of nonmigration probably resulted from developmental plasticity. Cultural transmission of migratory traditions enables species to deal with their environment based on experiences from earlier generations. Also, it allows a more adequate and rapid response to rapidly changing environments. When individuals break with their migratory traditions, new population structures can emerge that may affect gene flow. Recently, the migratory traditions of the Barnacle Goose Branta leucopsis changed, and new populations differing in migratory distance emerged. Here, we investigate the population genetic structure of the Barnacle Goose to evaluate the consequences of altered migratory traditions. We used a set of 358 single nucleotide polymorphism (SNP) markers to genotype 418 individuals from breeding populations in Greenland, Spitsbergen, Russia, Sweden and the Netherlands, the latter two being newly emerged populations. We used discriminant analysis of principal components, FST, linkage disequilibrium and a comparison of geneflow models using migrate-n to show that there is significant population structure, but that relatively many pairs of SNPs are in linkage disequilibrium, suggesting recent admixture between these populations. Despite the assumed traditions of migration within populations, we also show that genetic exchange occurs between all populations. The newly established nonmigratory population in the Netherlands is characterized by high emigration into other populations, which suggests more exploratory behaviour, possibly as a result of shortened parental care. These results suggest that migratory traditions in populations are subject to change in geese and that such changes have population genetic consequences. We argue that the emergence of nonmigration probably resulted from developmental plasticity. [PUBLICATION ABSTRACT] Cultural transmission of migratory traditions enables species to deal with their environment based on experiences from earlier generations. Also, it allows a more adequate and rapid response to rapidly changing environments. When individuals break with their migratory traditions new population structures can emerge that may affect gene flow. Recently, the migratory traditions of the Barnacle Goose Branta leucopsis changed, and new populations differing in migratory distance emerged. Here, we investigate the population genetic structure of the Barnacle Goose to evaluate the consequences of altered migratory traditions. We used a set of 358 Single Nucleotide Polymorphisms (SNP) markers to genotype 418 individuals from breeding populations in Greenland, Spitsbergen, Russia, Sweden and the Netherlands, the latter two being newly emerged populations. We used Discriminant Analysis of Principal Components, FST , linkage disequilibrium and a comparison of gene flow models using migrate-n to show that there is significant population structure, but that relatively many pairs of SNPs are in linkage disequilibrium, suggesting recent admixture between these populations. Despite the assumed traditions of migration within populations we also show that genetic exchange occurs between all populations. The newly established non-migratory population in the Netherlands is characterized by high emigration into other populations which suggests more exploratory behaviour, possibly as a result of shortened parental care. These results suggest that migratory traditions in populations are subject to change in geese and that such changes have population genetic consequences. We argue that the emergence of non-migration likely resulted from developmental plasticity. Cultural transmission of migratory traditions enables species to deal with their environment based on experiences from earlier generations. Also, it allows a more adequate and rapid response to rapidly changing environments. When individuals break with their migratory traditions, new population structures can emerge that may affect gene flow. Recently, the migratory traditions of the Barnacle Goose Branta leucopsis changed, and new populations differing in migratory distance emerged. Here, we investigate the population genetic structure of the Barnacle Goose to evaluate the consequences of altered migratory traditions. We used a set of 358 single nucleotide polymorphism ( SNP ) markers to genotype 418 individuals from breeding populations in Greenland, Spitsbergen, Russia, Sweden and the Netherlands, the latter two being newly emerged populations. We used discriminant analysis of principal components, F ST , linkage disequilibrium and a comparison of geneflow models using migrate ‐ n to show that there is significant population structure, but that relatively many pairs of SNP s are in linkage disequilibrium, suggesting recent admixture between these populations. Despite the assumed traditions of migration within populations, we also show that genetic exchange occurs between all populations. The newly established nonmigratory population in the Netherlands is characterized by high emigration into other populations, which suggests more exploratory behaviour, possibly as a result of shortened parental care. These results suggest that migratory traditions in populations are subject to change in geese and that such changes have population genetic consequences. We argue that the emergence of nonmigration probably resulted from developmental plasticity. |
| Author | Larsson, K. van der Jeugd, H. P. Crooijmans, R. P. M. A. Zhang, Q. van Hooft, P. Jonker, R. M. Kraus, R. H. S. Loonen, M. J. J. E. van Wieren, S. E. Prins, H. H. T. Groenen, M. A. M. Kurvers, R. H. J. M. Ydenberg, R. C. |
| Author_xml | – sequence: 1 givenname: R. M. surname: Jonker fullname: Jonker, R. M. email: Correspondence: Rudy M. Jonker,, mrjonker@gmail.com organization: Resource Ecology Group, Wageningen University, Droevendaalsesteeg 3a, 6708 PB, Wageningen, The Netherlands – sequence: 2 givenname: R. H. S. surname: Kraus fullname: Kraus, R. H. S. organization: Resource Ecology Group, Wageningen University, Droevendaalsesteeg 3a, 6708 PB, Wageningen, The Netherlands – sequence: 3 givenname: Q. surname: Zhang fullname: Zhang, Q. organization: Resource Ecology Group, Wageningen University, Droevendaalsesteeg 3a, 6708 PB, Wageningen, The Netherlands – sequence: 4 givenname: P. surname: van Hooft fullname: van Hooft, P. organization: Resource Ecology Group, Wageningen University, Droevendaalsesteeg 3a, 6708 PB, Wageningen, The Netherlands – sequence: 5 givenname: K. surname: Larsson fullname: Larsson, K. organization: Kalmar Maritime Academy, Linnaeus University, 391 82, Kalmar, Sweden – sequence: 6 givenname: H. P. surname: van der Jeugd fullname: van der Jeugd, H. P. organization: Dutch Centre for Avian Migration and Demography, NIOO-KNAW, Droevendaalsesteeg 10, 6708 PB, Wageningen, The Netherlands – sequence: 7 givenname: R. H. J. M. surname: Kurvers fullname: Kurvers, R. H. J. M. organization: Resource Ecology Group, Wageningen University, Droevendaalsesteeg 3a, 6708 PB, Wageningen, The Netherlands – sequence: 8 givenname: S. E. surname: van Wieren fullname: van Wieren, S. E. organization: Resource Ecology Group, Wageningen University, Droevendaalsesteeg 3a, 6708 PB, Wageningen, The Netherlands – sequence: 9 givenname: M. J. J. E. surname: Loonen fullname: Loonen, M. J. J. E. organization: Arctic Centre, University of Groningen, Aweg 30, 9718 CW, Groningen, The Netherlands – sequence: 10 givenname: R. P. M. A. surname: Crooijmans fullname: Crooijmans, R. P. M. A. organization: Animal Breeding and Genomics Centre, Wageningen University, P.O. Box 338, 6700 AH, Wageningen, The Netherlands – sequence: 11 givenname: R. C. surname: Ydenberg fullname: Ydenberg, R. C. organization: Resource Ecology Group, Wageningen University, Droevendaalsesteeg 3a, 6708 PB, Wageningen, The Netherlands – sequence: 12 givenname: M. A. M. surname: Groenen fullname: Groenen, M. A. M. organization: Animal Breeding and Genomics Centre, Wageningen University, P.O. Box 338, 6700 AH, Wageningen, The Netherlands – sequence: 13 givenname: H. H. T. surname: Prins fullname: Prins, H. H. T. organization: Resource Ecology Group, Wageningen University, Droevendaalsesteeg 3a, 6708 PB, Wageningen, The Netherlands |
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| Keywords | admixture Migration Anatidae Population genetics Modeling Vertebrata Migratory SNP Branta leucopsis migration modelling Aves Speciation cultural evolution population genetics speciation |
| Language | English |
| License | http://onlinelibrary.wiley.com/termsAndConditions#vor CC BY 4.0 2013 John Wiley & Sons Ltd. |
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| Notes | Fig. S1 A geographical representation of the 7 gene-flow models. Fig. S2-S5 Schematic map of LD pairs across the 374 SNPs. Fig. S6 Distribution of within chromosome LD pairs. Netherlands Organization for Scientific Research (NWO) Faunafonds ark:/67375/WNG-RDWQ98QQ-H KNJV (Royal Netherlands Hunting association) istex:3209EE98C8E075581D9EDA9E03A0B8404DA1A9F2 Stichting de Eik Trust ArticleID:MEC12548 ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 content type line 23 |
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| Publisher | Blackwell Publishing Ltd Blackwell |
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| References | Goudet J (2005) HIERFSTAT, a package for R to compute and test hierarchical F-statistics. Molecular Ecology Notes, 5, 184-186. Beerli P, Palczewski M (2010) Unified framework to evaluate panmixia and migration direction among multiple sampling locations. Genetics, 185, 313-326. Jacobsen F, Omland KE (2011) Species tree inference in a recent radiation of orioles (Genus Icterus): multiple markers and methods reveal cytonuclear discordance in the northern oriole group. Molecular phylogenetics and evolution, 61, 460-469. Hartl DL, Clark AG (2007) Principles of Population Genetics. Sinauer Associates, Sunderland, MA. McNamara JM, Dall SRX (2011) The evolution of unconditional strategies via the "multiplier effect". Ecology Letters, 14, 237-243. Jonker RM, Zhang Q, Van Hooft P et al. (2012b) The development of a genome wide SNP set for the barnacle goose Branta leucopsis. PLoS ONE, 7, e38412. Beerli P (2012) Tutorial: Comparison of Gene Flow Models Using Bayes Factors. Comparison of gene flow models using Bayes Factors, Tutorial. Kraus RHS, Zeddeman A, van Hooft P et al. (2011b) Evolution and connectivity in the world-wide migration system of the mallard: inferences from mitochondrial DNA. BMC Genetics, 12, 99. Riesch R, Barrett-Lennard LG, Ellis GM, Ford JKB, Deecke VB (2012) Cultural traditions and the evolution of reproductive isolation: ecological speciation in killer whales? Biological Journal of the Linnean Society, 106, 1-17. Black JM, Prop J, Larsson K (2007) Wild Goose Dilemmas. Branta Press, Groningen, The Netherlands. West-Eberhard MJ (2003) Developmental Plasticity and Evolution. Oxford University Press, Oxford, UK. Van Der Jeugd HP, Litvin KY (2006) Travels and traditions: long-distance dispersal in the Barnacle Goose Branta leucopsis based on individual case histories. Ardea, 94, 421-432. Feldman M, Aoki K, Kumm J (1996) Individual versus social learning: evolutionary analysis in a fluctuating environment. Anthropological Science, 104, 209-232. Mayr E (1942) Systematics and the Origin of Species, From the Viewpoint of a Zoologist. Columbia University Press, New York. Berthold P, Helbig AJ (1992) The genetics of bird migration: stimulus, timing, and direction. Ibis, 134, 35-40. Lensink R (1996) De opkomst van exoten in de Nederlandse Avifauna: verleden, heden en toekomst. (in Dutch, translated as: the emergence of exots in the Netherlands avifauna: past, present and future.). Limosa, 69, 103-130. Mills LS, Allendorf FW (1996) La regla de Un-Migrante-Por-Generación en Conservación y Manejo. Conservation Biology, 10, 1509-1518. Palacín C, Alonso JC, Alonso JA, Magaña M, Martín CA (2011) Cultural transmission and flexibility of partial migration patterns in a long-lived bird, the great bustard Otis tarda. Journal of Avian Biology, 42, 301-308. Von Essen L (1991) A note on the Lesser White-Fronted Goose Anser erythropus in Sweden and the result of a re-introduction scheme. Ardea, 79, 305-306. Raveling DG (1979) Traditional use of migration and winter roost sites by Canada geese. Journal of Wildlife Management, 43, 229-235. Friesen VL, Burg TM, McCoy KD (2007) Mechanisms of population differentiation in seabirds. Molecular Ecology, 16, 1765-1785. Alcaide M, Serrano D, Tella JL, Negro JJ (2009) Strong philopatry derived from capture-recapture records does not lead to fine-scale genetic differentiation in lesser kestrels. Journal Of Animal Ecology, 78, 468-475. Kraus RHS, Kerstens HHD, Van Hooft P et al. (2011a) Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos). BMC Genomics, 12, 1-11. McQuinn IH (1997) Metapopulations and the Atlantic herring. Reviews in Fish Biology and Fisheries, 7, 297-329. Baker RR (1978) The Evolutionary Ecology of Animal Migration. Holmes & Meier Publishers, New York. Milner-Gulland EJ, Fryxell JM, Sinclair ARE (2011) Animal Migration: A Synthesis. Oxford University Press, USA. Pulido F, Berthold P (2010) Current selection for lower migratory activity will drive the evolution of residency in a migratory bird population. Proceedings of the National Academy of Sciences of the United States of America, 107, 7341-7346. West-Eberhard MJ (2005) Developmental plasticity and the origin of species differences. Proceedings of the National Academy of Sciences, 102, 6543-6549. Hochbaum HA (1955) Travels and Traditions of Waterfowl. University of Minnesota Press, Minneapolis. Jombart T (2008) Adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics, 24, 1403-1405. Van der Jeugd HP, van der Veen IT, Larsson K (2002) Kin clustering in barnacle geese: familiarity or phenotype matching? Behavioral Ecology, 13, 786-790. Van der Jeugd HP, Gurtovaya E, Eichhorn G et al. (2003) Breeding barnacle geese in Kolokolkova Bay, Russia: number of breeding pairs, reproductive success and morphology. Polar Biology, 26, 700-706. Van der Jeugd HP, Eichhorn G, Litvin KE et al. (2009) Keeping up with early springs: rapid range expansion in an avian herbivore incurs a mismatch between reproductive timing and food supply. Global Change Biology, 15, 1057-1071. Warner GE, Leisch F (2002) "Genetics'', a Package for Handling Marker-Based Genetic Data within the Open-Source Statistical Package R. Available from: http://cran.r-project.org. Corten A (2002) The role of "conservatism" in herring migrations. Reviews in Fish Biology and Fisheries, 11, 339-361. Jonker RM, Eichhorn G, van Langevelde F, Bauer S (2010) Predation danger can explain changes in timing of migration: the case of the barnacle goose. PLoS ONE, 5, e11369. Jombart T, Devillard S, Balloux F (2010) Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC Genetics, 11, 1-15. Kraus RHS, van Hooft P, Megens H-J et al. (2013) Global lack of flyway structure in a cosmopolitan bird revealed by a genome wide survey of single nucleotide polymorphisms. Molecular Ecology, 22, 41-55. Prop J, Black JM, Shimmings P (2003) Travel schedules to the high arctic: barnacle geese trade-off the timing of migration with accumulation of fat deposits. Oikos, 103, 403-414. Raveling DG (1976) Migration reversal: a regular phenomenon of Canada geese. Science, 193, 153-154. Ward DH, Dau CP, Tibbitts TL et al. (2009) Change in abundance of Pacific Brant wintering in Alaska : evidence of a climate warming effect? Arctic, 62, 301-311. Larsson K, Forslund P, Gustafsson L, Ebbinge BS (1988) From the high Arctic to the Baltic: the successful establishment of a Barnacle Goose Branta leucopsis population on Gotland, Sweden. Ornis Scandinavica, 19, 182-189. Eichhorn G, Drent RH, Stahl J, Leito A, Alerstam T (2008) Skipping the Baltic: the emergence of a dichotomy of alternative spring migration strategies in Russian barnacle geese. Journal of Animal Ecology, 78, 63-72. Nelson ME (1995) Winter range arrival and departure of white-tailed deer in northeastern Minnesota. Canadian Journal of Zoology, 73, 1069-1076. Newton MA, Raftery AE (1994) Approximate Bayesian inference with the weighted likelihood bootstrap. Journal of the Royal Statistical Society. Series B (Methodological), 56, 3-48. R Development Core Team (2013) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. Available at: http://www.R-project.org. Owen M (1980) Wild Geese of the World - Their Life History and Ecology. B T Batsford Ltd., London. Prins HHT (1996) Ecology and Behaviour of the African Buffalo. Chapman & Hall, London, UK. Kurvers RHJM, Adamczyk VMAP, Kraus RHS et al. (2013) Contrasting context-dependence of familiarity and kinship in animal social networks. Animal Behaviour. doi: 10.1016/j.anbehav.2013.09.001. Humphries EM, Peters JL, Jónsson JE et al. (2009) Genetic differentiation between sympatric and allopatric wintering populations of snow geese. The Wilson Journal of Ornithology, 121, 730-738. Sutherland WJ (1988) The heritability of migration. Nature, 334, 471-472. Milligan BG (2003) Maximum-likelihood estimation of relatedness. Genetics, 163, 1153-1167. Lecomte N, Gauthier G, Giroux JF, Milot E, Bernatchez L (2009) Tug of war between continental gene flow and rearing site philopatry in a migratory bird: the sex-biased dispersal paradigm reconsidered. Molecular Ecology, 18, 593-602. Choudhury S, Black JM (1994) Barnacle geese preferentially pair with familiar associates from early life. Animal Behaviour, 48, 81-88. Wang J (2011) Coancestry: a program for simulating, estimating and analysing relatedness and inbreeding coefficients. Molecular Ecology Resources, 11, 141-145. Guttal V, Couzin ID (2010) Social interactions, information use, and the evolution of collective migration. Proceedings of the National Academy of Sciences, 107, 16172-16177. Jonker RM, Kuiper MW, Snijders L et al. (2011) Divergence in timing of parental care and migration in barnacle geese. Behavioral Ecology, 22, 326-331. Helbig AJ (1991) Inheritance of migratory direction in a bird species - a cross-breeding experiment with Se-migrating and Sw-migrating blackcaps (Sylvia-Atricapilla). Behavioral Ecology and Sociobiology, 28, 9-12. Kondo B, Peters JL, Rosensteel BB, Omland KE (2008) Coalescent analysis of multiple loci support a new route to speciation in birds. Evolution, 62, 1182-1191. Fox AD, Ebbinge BS, Mitchell C et al. (2010) Current estimates of goose population sizes in western Europe, a gap analysis and an assassment of trends. Ornis Svecica, 20, 115-127. Pulido F (2007) The genetics and evolution of avian migration. BioScience, 57, 165-174. Sutherland WJ (1998) Evidence for flexibility and constraint in migration systems. Journal of Avian Biology, 29, 441-446. Harrison XA, Tregenza T, Inger R et al. (2010) Cultural inheritance drives site fidelity and migratory connectivity in a long-distance migrant. Molecular Ecology, 19, 5484-5496. Jonker RM, Kurvers R, van de Bilt A et al. (2012a) Rapid adaptive adjustment of parental care coincident with altered migratory behaviour. Evolutionary Ecology, 26, 657-667. 2010; 11 1995; 73 2010; 107 2013; 22 2010; 19 2002; 13 2002; 11 2011; 61 2010; 185 2008; 78 2011; 11 1970 2011; 14 1996; 104 1978 1997; 7 2010; 20 2005; 102 2011b; 12 2009; 121 1988; 334 1942 2011; 22 2008; 24 1980 1996; 69 2008; 62 2010; 5 2009; 15 2009; 18 2003; 163 2012a; 26 1998; 29 2009; 62 2006; 94 2012 1988; 19 2011 1991; 79 2009 1997 2007 1996 1994; 48 1992 2003 2002 1976; 193 2012; 106 1996; 10 2007; 57 2011a; 12 2007; 16 1955 2009; 78 1991; 28 1992; 134 2005; 5 1994; 56 2011; 42 2003; 26 2013 2003; 103 1979; 43 2012b; 7 e_1_2_6_51_1 e_1_2_6_53_1 e_1_2_6_32_1 e_1_2_6_70_1 Kear J (e_1_2_6_30_1) 1970 Warner GE (e_1_2_6_68_1) 2002 Mayr E (e_1_2_6_40_1) 1942 e_1_2_6_19_1 e_1_2_6_13_1 e_1_2_6_36_1 e_1_2_6_59_1 e_1_2_6_11_1 e_1_2_6_34_1 e_1_2_6_17_1 e_1_2_6_15_1 e_1_2_6_57_1 Jeugd HP (e_1_2_6_61_1) 2006; 94 e_1_2_6_62_1 e_1_2_6_64_1 e_1_2_6_43_1 e_1_2_6_20_1 e_1_2_6_41_1 e_1_2_6_60_1 Baker RR (e_1_2_6_4_1) 1978 e_1_2_6_5_1 e_1_2_6_7_1 e_1_2_6_24_1 e_1_2_6_22_1 e_1_2_6_66_1 e_1_2_6_28_1 e_1_2_6_45_1 e_1_2_6_26_1 e_1_2_6_47_1 e_1_2_6_52_1 e_1_2_6_54_1 e_1_2_6_10_1 e_1_2_6_31_1 Lensink R (e_1_2_6_38_1) 1996; 69 Owen M (e_1_2_6_49_1) 1980 e_1_2_6_50_1 R Development Core Team (e_1_2_6_55_1) 2013 Black JM (e_1_2_6_9_1) 2007 e_1_2_6_14_1 e_1_2_6_35_1 e_1_2_6_12_1 e_1_2_6_33_1 e_1_2_6_18_1 e_1_2_6_39_1 e_1_2_6_56_1 e_1_2_6_16_1 e_1_2_6_37_1 e_1_2_6_58_1 e_1_2_6_63_1 e_1_2_6_42_1 e_1_2_6_21_1 Anderson MG (e_1_2_6_3_1) 1992 Essen L (e_1_2_6_65_1) 1991; 79 Beerli P (e_1_2_6_6_1) 2012 e_1_2_6_8_1 e_1_2_6_25_1 e_1_2_6_48_1 e_1_2_6_23_1 Mowbray TB (e_1_2_6_46_1) 2002 e_1_2_6_2_1 e_1_2_6_29_1 e_1_2_6_44_1 e_1_2_6_67_1 e_1_2_6_27_1 e_1_2_6_69_1 |
| References_xml | – reference: Corten A (2002) The role of "conservatism" in herring migrations. Reviews in Fish Biology and Fisheries, 11, 339-361. – reference: Jonker RM, Kuiper MW, Snijders L et al. (2011) Divergence in timing of parental care and migration in barnacle geese. Behavioral Ecology, 22, 326-331. – reference: Mayr E (1942) Systematics and the Origin of Species, From the Viewpoint of a Zoologist. Columbia University Press, New York. – reference: Sutherland WJ (1988) The heritability of migration. Nature, 334, 471-472. – reference: Kondo B, Peters JL, Rosensteel BB, Omland KE (2008) Coalescent analysis of multiple loci support a new route to speciation in birds. Evolution, 62, 1182-1191. – reference: Beerli P, Palczewski M (2010) Unified framework to evaluate panmixia and migration direction among multiple sampling locations. Genetics, 185, 313-326. – reference: McQuinn IH (1997) Metapopulations and the Atlantic herring. Reviews in Fish Biology and Fisheries, 7, 297-329. – reference: Choudhury S, Black JM (1994) Barnacle geese preferentially pair with familiar associates from early life. Animal Behaviour, 48, 81-88. – reference: Jombart T, Devillard S, Balloux F (2010) Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC Genetics, 11, 1-15. – reference: Von Essen L (1991) A note on the Lesser White-Fronted Goose Anser erythropus in Sweden and the result of a re-introduction scheme. Ardea, 79, 305-306. – reference: Sutherland WJ (1998) Evidence for flexibility and constraint in migration systems. Journal of Avian Biology, 29, 441-446. – reference: Van der Jeugd HP, van der Veen IT, Larsson K (2002) Kin clustering in barnacle geese: familiarity or phenotype matching? Behavioral Ecology, 13, 786-790. – reference: McNamara JM, Dall SRX (2011) The evolution of unconditional strategies via the "multiplier effect". Ecology Letters, 14, 237-243. – reference: Harrison XA, Tregenza T, Inger R et al. (2010) Cultural inheritance drives site fidelity and migratory connectivity in a long-distance migrant. Molecular Ecology, 19, 5484-5496. – reference: Humphries EM, Peters JL, Jónsson JE et al. (2009) Genetic differentiation between sympatric and allopatric wintering populations of snow geese. The Wilson Journal of Ornithology, 121, 730-738. – reference: Mills LS, Allendorf FW (1996) La regla de Un-Migrante-Por-Generación en Conservación y Manejo. Conservation Biology, 10, 1509-1518. – reference: Owen M (1980) Wild Geese of the World - Their Life History and Ecology. B T Batsford Ltd., London. – reference: Jonker RM, Kurvers R, van de Bilt A et al. (2012a) Rapid adaptive adjustment of parental care coincident with altered migratory behaviour. Evolutionary Ecology, 26, 657-667. – reference: Jombart T (2008) Adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics, 24, 1403-1405. – reference: Jonker RM, Eichhorn G, van Langevelde F, Bauer S (2010) Predation danger can explain changes in timing of migration: the case of the barnacle goose. PLoS ONE, 5, e11369. – reference: Kraus RHS, Zeddeman A, van Hooft P et al. (2011b) Evolution and connectivity in the world-wide migration system of the mallard: inferences from mitochondrial DNA. BMC Genetics, 12, 99. – reference: Beerli P (2012) Tutorial: Comparison of Gene Flow Models Using Bayes Factors. Comparison of gene flow models using Bayes Factors, Tutorial. – reference: Van Der Jeugd HP, Litvin KY (2006) Travels and traditions: long-distance dispersal in the Barnacle Goose Branta leucopsis based on individual case histories. Ardea, 94, 421-432. – reference: Fox AD, Ebbinge BS, Mitchell C et al. (2010) Current estimates of goose population sizes in western Europe, a gap analysis and an assassment of trends. Ornis Svecica, 20, 115-127. – reference: Larsson K, Forslund P, Gustafsson L, Ebbinge BS (1988) From the high Arctic to the Baltic: the successful establishment of a Barnacle Goose Branta leucopsis population on Gotland, Sweden. Ornis Scandinavica, 19, 182-189. – reference: Guttal V, Couzin ID (2010) Social interactions, information use, and the evolution of collective migration. Proceedings of the National Academy of Sciences, 107, 16172-16177. – reference: Palacín C, Alonso JC, Alonso JA, Magaña M, Martín CA (2011) Cultural transmission and flexibility of partial migration patterns in a long-lived bird, the great bustard Otis tarda. Journal of Avian Biology, 42, 301-308. – reference: Raveling DG (1979) Traditional use of migration and winter roost sites by Canada geese. Journal of Wildlife Management, 43, 229-235. – reference: Hartl DL, Clark AG (2007) Principles of Population Genetics. Sinauer Associates, Sunderland, MA. – reference: Jacobsen F, Omland KE (2011) Species tree inference in a recent radiation of orioles (Genus Icterus): multiple markers and methods reveal cytonuclear discordance in the northern oriole group. Molecular phylogenetics and evolution, 61, 460-469. – reference: Kraus RHS, Kerstens HHD, Van Hooft P et al. (2011a) Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos). BMC Genomics, 12, 1-11. – reference: Wang J (2011) Coancestry: a program for simulating, estimating and analysing relatedness and inbreeding coefficients. Molecular Ecology Resources, 11, 141-145. – reference: Jonker RM, Zhang Q, Van Hooft P et al. (2012b) The development of a genome wide SNP set for the barnacle goose Branta leucopsis. PLoS ONE, 7, e38412. – reference: Van der Jeugd HP, Gurtovaya E, Eichhorn G et al. (2003) Breeding barnacle geese in Kolokolkova Bay, Russia: number of breeding pairs, reproductive success and morphology. Polar Biology, 26, 700-706. – reference: Alcaide M, Serrano D, Tella JL, Negro JJ (2009) Strong philopatry derived from capture-recapture records does not lead to fine-scale genetic differentiation in lesser kestrels. Journal Of Animal Ecology, 78, 468-475. – reference: West-Eberhard MJ (2003) Developmental Plasticity and Evolution. Oxford University Press, Oxford, UK. – reference: Newton MA, Raftery AE (1994) Approximate Bayesian inference with the weighted likelihood bootstrap. Journal of the Royal Statistical Society. Series B (Methodological), 56, 3-48. – reference: Feldman M, Aoki K, Kumm J (1996) Individual versus social learning: evolutionary analysis in a fluctuating environment. Anthropological Science, 104, 209-232. – reference: Milner-Gulland EJ, Fryxell JM, Sinclair ARE (2011) Animal Migration: A Synthesis. Oxford University Press, USA. – reference: Warner GE, Leisch F (2002) "Genetics'', a Package for Handling Marker-Based Genetic Data within the Open-Source Statistical Package R. Available from: http://cran.r-project.org. – reference: Hochbaum HA (1955) Travels and Traditions of Waterfowl. University of Minnesota Press, Minneapolis. – reference: Ward DH, Dau CP, Tibbitts TL et al. (2009) Change in abundance of Pacific Brant wintering in Alaska : evidence of a climate warming effect? Arctic, 62, 301-311. – reference: Black JM, Prop J, Larsson K (2007) Wild Goose Dilemmas. Branta Press, Groningen, The Netherlands. – reference: Pulido F (2007) The genetics and evolution of avian migration. BioScience, 57, 165-174. – reference: Lensink R (1996) De opkomst van exoten in de Nederlandse Avifauna: verleden, heden en toekomst. (in Dutch, translated as: the emergence of exots in the Netherlands avifauna: past, present and future.). Limosa, 69, 103-130. – reference: Van der Jeugd HP, Eichhorn G, Litvin KE et al. (2009) Keeping up with early springs: rapid range expansion in an avian herbivore incurs a mismatch between reproductive timing and food supply. Global Change Biology, 15, 1057-1071. – reference: Baker RR (1978) The Evolutionary Ecology of Animal Migration. Holmes & Meier Publishers, New York. – reference: Milligan BG (2003) Maximum-likelihood estimation of relatedness. Genetics, 163, 1153-1167. – reference: West-Eberhard MJ (2005) Developmental plasticity and the origin of species differences. Proceedings of the National Academy of Sciences, 102, 6543-6549. – reference: Prop J, Black JM, Shimmings P (2003) Travel schedules to the high arctic: barnacle geese trade-off the timing of migration with accumulation of fat deposits. Oikos, 103, 403-414. – reference: Kurvers RHJM, Adamczyk VMAP, Kraus RHS et al. (2013) Contrasting context-dependence of familiarity and kinship in animal social networks. Animal Behaviour. doi: 10.1016/j.anbehav.2013.09.001. – reference: Kraus RHS, van Hooft P, Megens H-J et al. (2013) Global lack of flyway structure in a cosmopolitan bird revealed by a genome wide survey of single nucleotide polymorphisms. Molecular Ecology, 22, 41-55. – reference: R Development Core Team (2013) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. Available at: http://www.R-project.org. – reference: Pulido F, Berthold P (2010) Current selection for lower migratory activity will drive the evolution of residency in a migratory bird population. Proceedings of the National Academy of Sciences of the United States of America, 107, 7341-7346. – reference: Lecomte N, Gauthier G, Giroux JF, Milot E, Bernatchez L (2009) Tug of war between continental gene flow and rearing site philopatry in a migratory bird: the sex-biased dispersal paradigm reconsidered. Molecular Ecology, 18, 593-602. – reference: Eichhorn G, Drent RH, Stahl J, Leito A, Alerstam T (2008) Skipping the Baltic: the emergence of a dichotomy of alternative spring migration strategies in Russian barnacle geese. Journal of Animal Ecology, 78, 63-72. – reference: Goudet J (2005) HIERFSTAT, a package for R to compute and test hierarchical F-statistics. Molecular Ecology Notes, 5, 184-186. – reference: Prins HHT (1996) Ecology and Behaviour of the African Buffalo. Chapman & Hall, London, UK. – reference: Berthold P, Helbig AJ (1992) The genetics of bird migration: stimulus, timing, and direction. Ibis, 134, 35-40. – reference: Helbig AJ (1991) Inheritance of migratory direction in a bird species - a cross-breeding experiment with Se-migrating and Sw-migrating blackcaps (Sylvia-Atricapilla). Behavioral Ecology and Sociobiology, 28, 9-12. – reference: Nelson ME (1995) Winter range arrival and departure of white-tailed deer in northeastern Minnesota. 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| SubjectTerms | admixture Animal Migration Animal, plant and microbial ecology Animals Aquatic birds Biological and medical sciences Biological evolution bird Branta leucopsis canada geese connectivity cultural evolution differentiation direction Discriminant Analysis Emigration Environmental changes evolution Evolutionary Biology Evolutionsbiologi Fundamental and applied biological sciences. Psychology Geese - genetics Gene Flow General aspects. Techniques Genetic structure Genetics Genetics of eukaryotes. Biological and molecular evolution Genetics, Population Genotype Greenland inheritance Linkage Disequilibrium Methods and techniques (sampling, tagging, trapping, modelling...) migration modelling Migratory species Models, Genetic Netherlands parental care Polymorphism, Single Nucleotide population population genetics Population genetics, reproduction patterns Population structure Principal Component Analysis relatedness Russia SNP speciation Svalbard Sweden Traditions Wildfowl |
| Title | Genetic consequences of breaking migratory traditions in barnacle geese Branta leucopsis |
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