Cell type specific transcriptomic differences in depression show similar patterns between males and females but implicate distinct cell types and genes
Major depressive disorder (MDD) is a common, heterogenous, and potentially serious psychiatric illness. Diverse brain cell types have been implicated in MDD etiology. Significant sexual differences exist in MDD clinical presentation and outcome, and recent evidence suggests different molecular bases...
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| Published in: | Nature communications Vol. 14; no. 1; pp. 2912 - 18 |
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| Main Authors: | , , , , , , , , , , , , , |
| Format: | Journal Article |
| Language: | English |
| Published: |
London
Nature Publishing Group UK
22.05.2023
Nature Publishing Group Nature Portfolio |
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| ISSN: | 2041-1723, 2041-1723 |
| Online Access: | Get full text |
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| Abstract | Major depressive disorder (MDD) is a common, heterogenous, and potentially serious psychiatric illness. Diverse brain cell types have been implicated in MDD etiology. Significant sexual differences exist in MDD clinical presentation and outcome, and recent evidence suggests different molecular bases for male and female MDD. We evaluated over 160,000 nuclei from 71 female and male donors, leveraging new and pre-existing single-nucleus RNA-sequencing data from the dorsolateral prefrontal cortex. Cell type specific transcriptome-wide threshold-free MDD-associated gene expression patterns were similar between the sexes, but significant differentially expressed genes (DEGs) diverged. Among 7 broad cell types and 41 clusters evaluated, microglia and parvalbumin interneurons contributed the most DEGs in females, while deep layer excitatory neurons, astrocytes, and oligodendrocyte precursors were the major contributors in males. Further, the Mic1 cluster with 38% of female DEGs and the ExN10_L46 cluster with 53% of male DEGs, stood out in the meta-analysis of both sexes.
Sex differences in brain transcriptomics have unknown cell type specificity. Here, authors show concordant cortical transcriptomic patterns in depression within individual cell types between sexes, but distinctly affected top cell types and genes. |
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| AbstractList | Major depressive disorder (MDD) is a common, heterogenous, and potentially serious psychiatric illness. Diverse brain cell types have been implicated in MDD etiology. Significant sexual differences exist in MDD clinical presentation and outcome, and recent evidence suggests different molecular bases for male and female MDD. We evaluated over 160,000 nuclei from 71 female and male donors, leveraging new and pre-existing single-nucleus RNA-sequencing data from the dorsolateral prefrontal cortex. Cell type specific transcriptome-wide threshold-free MDD-associated gene expression patterns were similar between the sexes, but significant differentially expressed genes (DEGs) diverged. Among 7 broad cell types and 41 clusters evaluated, microglia and parvalbumin interneurons contributed the most DEGs in females, while deep layer excitatory neurons, astrocytes, and oligodendrocyte precursors were the major contributors in males. Further, the Mic1 cluster with 38% of female DEGs and the ExN10_L46 cluster with 53% of male DEGs, stood out in the meta-analysis of both sexes. Major depressive disorder (MDD) is a common, heterogenous, and potentially serious psychiatric illness. Diverse brain cell types have been implicated in MDD etiology. Significant sexual differences exist in MDD clinical presentation and outcome, and recent evidence suggests different molecular bases for male and female MDD. We evaluated over 160,000 nuclei from 71 female and male donors, leveraging new and pre-existing single-nucleus RNA-sequencing data from the dorsolateral prefrontal cortex. Cell type specific transcriptome-wide threshold-free MDD-associated gene expression patterns were similar between the sexes, but significant differentially expressed genes (DEGs) diverged. Among 7 broad cell types and 41 clusters evaluated, microglia and parvalbumin interneurons contributed the most DEGs in females, while deep layer excitatory neurons, astrocytes, and oligodendrocyte precursors were the major contributors in males. Further, the Mic1 cluster with 38% of female DEGs and the ExN10_L46 cluster with 53% of male DEGs, stood out in the meta-analysis of both sexes. Sex differences in brain transcriptomics have unknown cell type specificity. Here, authors show concordant cortical transcriptomic patterns in depression within individual cell types between sexes, but distinctly affected top cell types and genes. Major depressive disorder (MDD) is a common, heterogenous, and potentially serious psychiatric illness. Diverse brain cell types have been implicated in MDD etiology. Significant sexual differences exist in MDD clinical presentation and outcome, and recent evidence suggests different molecular bases for male and female MDD. We evaluated over 160,000 nuclei from 71 female and male donors, leveraging new and pre-existing single-nucleus RNA-sequencing data from the dorsolateral prefrontal cortex. Cell type specific transcriptome-wide threshold-free MDD-associated gene expression patterns were similar between the sexes, but significant differentially expressed genes (DEGs) diverged. Among 7 broad cell types and 41 clusters evaluated, microglia and parvalbumin interneurons contributed the most DEGs in females, while deep layer excitatory neurons, astrocytes, and oligodendrocyte precursors were the major contributors in males. Further, the Mic1 cluster with 38% of female DEGs and the ExN10_L46 cluster with 53% of male DEGs, stood out in the meta-analysis of both sexes. Sex differences in brain transcriptomics have unknown cell type specificity. Here, authors show concordant cortical transcriptomic patterns in depression within individual cell types between sexes, but distinctly affected top cell types and genes. Major depressive disorder (MDD) is a common, heterogenous, and potentially serious psychiatric illness. Diverse brain cell types have been implicated in MDD etiology. Significant sexual differences exist in MDD clinical presentation and outcome, and recent evidence suggests different molecular bases for male and female MDD. We evaluated over 160,000 nuclei from 71 female and male donors, leveraging new and pre-existing single-nucleus RNA-sequencing data from the dorsolateral prefrontal cortex. Cell type specific transcriptome-wide threshold-free MDD-associated gene expression patterns were similar between the sexes, but significant differentially expressed genes (DEGs) diverged. Among 7 broad cell types and 41 clusters evaluated, microglia and parvalbumin interneurons contributed the most DEGs in females, while deep layer excitatory neurons, astrocytes, and oligodendrocyte precursors were the major contributors in males. Further, the Mic1 cluster with 38% of female DEGs and the ExN10_L46 cluster with 53% of male DEGs, stood out in the meta-analysis of both sexes.Major depressive disorder (MDD) is a common, heterogenous, and potentially serious psychiatric illness. Diverse brain cell types have been implicated in MDD etiology. Significant sexual differences exist in MDD clinical presentation and outcome, and recent evidence suggests different molecular bases for male and female MDD. We evaluated over 160,000 nuclei from 71 female and male donors, leveraging new and pre-existing single-nucleus RNA-sequencing data from the dorsolateral prefrontal cortex. Cell type specific transcriptome-wide threshold-free MDD-associated gene expression patterns were similar between the sexes, but significant differentially expressed genes (DEGs) diverged. Among 7 broad cell types and 41 clusters evaluated, microglia and parvalbumin interneurons contributed the most DEGs in females, while deep layer excitatory neurons, astrocytes, and oligodendrocyte precursors were the major contributors in males. Further, the Mic1 cluster with 38% of female DEGs and the ExN10_L46 cluster with 53% of male DEGs, stood out in the meta-analysis of both sexes. Abstract Major depressive disorder (MDD) is a common, heterogenous, and potentially serious psychiatric illness. Diverse brain cell types have been implicated in MDD etiology. Significant sexual differences exist in MDD clinical presentation and outcome, and recent evidence suggests different molecular bases for male and female MDD. We evaluated over 160,000 nuclei from 71 female and male donors, leveraging new and pre-existing single-nucleus RNA-sequencing data from the dorsolateral prefrontal cortex. Cell type specific transcriptome-wide threshold-free MDD-associated gene expression patterns were similar between the sexes, but significant differentially expressed genes (DEGs) diverged. Among 7 broad cell types and 41 clusters evaluated, microglia and parvalbumin interneurons contributed the most DEGs in females, while deep layer excitatory neurons, astrocytes, and oligodendrocyte precursors were the major contributors in males. Further, the Mic1 cluster with 38% of female DEGs and the ExN10_L46 cluster with 53% of male DEGs, stood out in the meta-analysis of both sexes. |
| ArticleNumber | 2912 |
| Author | Mitsuhashi, Haruka Nagy, Corina Aouabed, Zahia Fiori, Laura M. Maitra, Malosree Mash, Deborah C. Perlman, Kelly Yang, Jennie Suderman, Matthew Mechawar, Naguib Chawla, Anjali Davoli, Maria Antonietta Rahimian, Reza Turecki, Gustavo |
| Author_xml | – sequence: 1 givenname: Malosree surname: Maitra fullname: Maitra, Malosree organization: McGill Group for Suicide Studies, Douglas Institute, Integrated Program in Neuroscience, McGill University, Douglas Institute, Department of Psychiatry, McGill University – sequence: 2 givenname: Haruka surname: Mitsuhashi fullname: Mitsuhashi, Haruka organization: McGill Group for Suicide Studies, Douglas Institute, Integrated Program in Neuroscience, McGill University, Douglas Institute, Department of Psychiatry, McGill University – sequence: 3 givenname: Reza surname: Rahimian fullname: Rahimian, Reza organization: McGill Group for Suicide Studies, Douglas Institute, Douglas Institute, Department of Psychiatry, McGill University – sequence: 4 givenname: Anjali surname: Chawla fullname: Chawla, Anjali organization: McGill Group for Suicide Studies, Douglas Institute, Integrated Program in Neuroscience, McGill University, Douglas Institute, Department of Psychiatry, McGill University – sequence: 5 givenname: Jennie surname: Yang fullname: Yang, Jennie organization: McGill Group for Suicide Studies, Douglas Institute, Douglas Institute, Department of Psychiatry, McGill University – sequence: 6 givenname: Laura M. surname: Fiori fullname: Fiori, Laura M. organization: McGill Group for Suicide Studies, Douglas Institute, Douglas Institute, Department of Psychiatry, McGill University – sequence: 7 givenname: Maria Antonietta surname: Davoli fullname: Davoli, Maria Antonietta organization: McGill Group for Suicide Studies, Douglas Institute, Douglas Institute, Department of Psychiatry, McGill University – sequence: 8 givenname: Kelly surname: Perlman fullname: Perlman, Kelly organization: McGill Group for Suicide Studies, Douglas Institute, Integrated Program in Neuroscience, McGill University, Douglas Institute, Department of Psychiatry, McGill University – sequence: 9 givenname: Zahia surname: Aouabed fullname: Aouabed, Zahia organization: McGill Group for Suicide Studies, Douglas Institute, Douglas Institute, Department of Psychiatry, McGill University – sequence: 10 givenname: Deborah C. surname: Mash fullname: Mash, Deborah C. organization: Dr. Kiran C. Patel College of Allopathic Medicine, Nova Southeastern University – sequence: 11 givenname: Matthew orcidid: 0000-0002-2715-9930 surname: Suderman fullname: Suderman, Matthew organization: Population Health Sciences, Bristol Medical School, University of Bristol, MRC Integrative Epidemiology Unit, University of Bristol – sequence: 12 givenname: Naguib orcidid: 0000-0003-4960-756X surname: Mechawar fullname: Mechawar, Naguib organization: McGill Group for Suicide Studies, Douglas Institute, Integrated Program in Neuroscience, McGill University, Douglas Institute, Department of Psychiatry, McGill University – sequence: 13 givenname: Gustavo orcidid: 0000-0003-4075-2736 surname: Turecki fullname: Turecki, Gustavo email: gustavo.turecki@mcgill.ca organization: McGill Group for Suicide Studies, Douglas Institute, Integrated Program in Neuroscience, McGill University, Douglas Institute, Department of Psychiatry, McGill University – sequence: 14 givenname: Corina orcidid: 0000-0003-1439-0129 surname: Nagy fullname: Nagy, Corina email: corina.nagy@mcgill.ca organization: McGill Group for Suicide Studies, Douglas Institute, Integrated Program in Neuroscience, McGill University, Douglas Institute, Department of Psychiatry, McGill University |
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| Snippet | Major depressive disorder (MDD) is a common, heterogenous, and potentially serious psychiatric illness. Diverse brain cell types have been implicated in MDD... Abstract Major depressive disorder (MDD) is a common, heterogenous, and potentially serious psychiatric illness. Diverse brain cell types have been implicated... |
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| Title | Cell type specific transcriptomic differences in depression show similar patterns between males and females but implicate distinct cell types and genes |
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