Single cell transcriptomic analysis of murine lung development on hyperoxia-induced damage
During late lung development, alveolar and microvascular development is finalized to enable sufficient gas exchange. Impaired late lung development manifests as bronchopulmonary dysplasia (BPD) in preterm infants. Single-cell RNA sequencing (scRNA-seq) allows for assessment of complex cellular dynam...
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| Veröffentlicht in: | Nature communications Jg. 12; H. 1; S. 1565 - 19 |
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| Format: | Journal Article |
| Sprache: | Englisch |
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10.03.2021
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| ISSN: | 2041-1723, 2041-1723 |
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| Abstract | During late lung development, alveolar and microvascular development is finalized to enable sufficient gas exchange. Impaired late lung development manifests as bronchopulmonary dysplasia (BPD) in preterm infants. Single-cell RNA sequencing (scRNA-seq) allows for assessment of complex cellular dynamics during biological processes, such as development. Here, we use MULTI-seq to generate scRNA-seq profiles of over 66,000 cells from 36 mice during normal or impaired lung development secondary to hyperoxia with validation of some of the findings in lungs from BPD patients. We observe dynamic populations of cells, including several rare cell types and putative progenitors. Hyperoxia exposure, which mimics the BPD phenotype, alters the composition of all cellular compartments, particularly alveolar epithelium, stromal fibroblasts, capillary endothelium and macrophage populations. Pathway analysis and predicted dynamic cellular crosstalk suggest inflammatory signaling as the main driver of hyperoxia-induced changes. Our data provides a single-cell view of cellular changes associated with late lung development in health and disease.
It is unclear how changes in gene expression are induced by changes in oxygen levels during late lung development. Here, the authors provide data from MULTI-seq scRNAseq in mice showing exposure to higher oxygen levels affects cell fates, especially for alveolarisation, and define gene/cell signatures of impaired lung development under hyperoxia. |
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| AbstractList | During late lung development, alveolar and microvascular development is finalized to enable sufficient gas exchange. Impaired late lung development manifests as bronchopulmonary dysplasia (BPD) in preterm infants. Single-cell RNA sequencing (scRNA-seq) allows for assessment of complex cellular dynamics during biological processes, such as development. Here, we use MULTI-seq to generate scRNA-seq profiles of over 66,000 cells from 36 mice during normal or impaired lung development secondary to hyperoxia with validation of some of the findings in lungs from BPD patients. We observe dynamic populations of cells, including several rare cell types and putative progenitors. Hyperoxia exposure, which mimics the BPD phenotype, alters the composition of all cellular compartments, particularly alveolar epithelium, stromal fibroblasts, capillary endothelium and macrophage populations. Pathway analysis and predicted dynamic cellular crosstalk suggest inflammatory signaling as the main driver of hyperoxia-induced changes. Our data provides a single-cell view of cellular changes associated with late lung development in health and disease.It is unclear how changes in gene expression are induced by changes in oxygen levels during late lung development. Here, the authors provide data from MULTI-seq scRNAseq in mice showing exposure to higher oxygen levels affects cell fates, especially for alveolarisation, and define gene/cell signatures of impaired lung development under hyperoxia. During late lung development, alveolar and microvascular development is finalized to enable sufficient gas exchange. Impaired late lung development manifests as bronchopulmonary dysplasia (BPD) in preterm infants. Single-cell RNA sequencing (scRNA-seq) allows for assessment of complex cellular dynamics during biological processes, such as development. Here, we use MULTI-seq to generate scRNA-seq profiles of over 66,000 cells from 36 mice during normal or impaired lung development secondary to hyperoxia with validation of some of the findings in lungs from BPD patients. We observe dynamic populations of cells, including several rare cell types and putative progenitors. Hyperoxia exposure, which mimics the BPD phenotype, alters the composition of all cellular compartments, particularly alveolar epithelium, stromal fibroblasts, capillary endothelium and macrophage populations. Pathway analysis and predicted dynamic cellular crosstalk suggest inflammatory signaling as the main driver of hyperoxia-induced changes. Our data provides a single-cell view of cellular changes associated with late lung development in health and disease. During late lung development, alveolar and microvascular development is finalized to enable sufficient gas exchange. Impaired late lung development manifests as bronchopulmonary dysplasia (BPD) in preterm infants. Single-cell RNA sequencing (scRNA-seq) allows for assessment of complex cellular dynamics during biological processes, such as development. Here, we use MULTI-seq to generate scRNA-seq profiles of over 66,000 cells from 36 mice during normal or impaired lung development secondary to hyperoxia with validation of some of the findings in lungs from BPD patients. We observe dynamic populations of cells, including several rare cell types and putative progenitors. Hyperoxia exposure, which mimics the BPD phenotype, alters the composition of all cellular compartments, particularly alveolar epithelium, stromal fibroblasts, capillary endothelium and macrophage populations. Pathway analysis and predicted dynamic cellular crosstalk suggest inflammatory signaling as the main driver of hyperoxia-induced changes. Our data provides a single-cell view of cellular changes associated with late lung development in health and disease. It is unclear how changes in gene expression are induced by changes in oxygen levels during late lung development. Here, the authors provide data from MULTI-seq scRNAseq in mice showing exposure to higher oxygen levels affects cell fates, especially for alveolarisation, and define gene/cell signatures of impaired lung development under hyperoxia. It is unclear how changes in gene expression are induced by changes in oxygen levels during late lung development. Here, the authors provide data from MULTI-seq scRNAseq in mice showing exposure to higher oxygen levels affects cell fates, especially for alveolarisation, and define gene/cell signatures of impaired lung development under hyperoxia. During late lung development, alveolar and microvascular development is finalized to enable sufficient gas exchange. Impaired late lung development manifests as bronchopulmonary dysplasia (BPD) in preterm infants. Single-cell RNA sequencing (scRNA-seq) allows for assessment of complex cellular dynamics during biological processes, such as development. Here, we use MULTI-seq to generate scRNA-seq profiles of over 66,000 cells from 36 mice during normal or impaired lung development secondary to hyperoxia with validation of some of the findings in lungs from BPD patients. We observe dynamic populations of cells, including several rare cell types and putative progenitors. Hyperoxia exposure, which mimics the BPD phenotype, alters the composition of all cellular compartments, particularly alveolar epithelium, stromal fibroblasts, capillary endothelium and macrophage populations. Pathway analysis and predicted dynamic cellular crosstalk suggest inflammatory signaling as the main driver of hyperoxia-induced changes. Our data provides a single-cell view of cellular changes associated with late lung development in health and disease.During late lung development, alveolar and microvascular development is finalized to enable sufficient gas exchange. Impaired late lung development manifests as bronchopulmonary dysplasia (BPD) in preterm infants. Single-cell RNA sequencing (scRNA-seq) allows for assessment of complex cellular dynamics during biological processes, such as development. Here, we use MULTI-seq to generate scRNA-seq profiles of over 66,000 cells from 36 mice during normal or impaired lung development secondary to hyperoxia with validation of some of the findings in lungs from BPD patients. We observe dynamic populations of cells, including several rare cell types and putative progenitors. Hyperoxia exposure, which mimics the BPD phenotype, alters the composition of all cellular compartments, particularly alveolar epithelium, stromal fibroblasts, capillary endothelium and macrophage populations. Pathway analysis and predicted dynamic cellular crosstalk suggest inflammatory signaling as the main driver of hyperoxia-induced changes. Our data provides a single-cell view of cellular changes associated with late lung development in health and disease. |
| ArticleNumber | 1565 |
| Author | Hurskainen, Maria Cyr-Depauw, Chanèle Heikinheimo, Markku Mižíková, Ivana Cook, David P. Andersson, Noora Jankov, Robert P. Lesage, Flore Vanderhyden, Barbara C. Helle, Emmi Renesme, Laurent Thébaud, Bernard |
| Author_xml | – sequence: 1 givenname: Maria surname: Hurskainen fullname: Hurskainen, Maria organization: Sinclair Centre for Regenerative Medicine, Ottawa Hospital Research Institute, Division of Pediatric Cardiology, New Children’s Hospital, Helsinki University Hospital and University of Helsinki, Pediatric Research Center, New Children’s Hospital, University of Helsinki and Helsinki University Hospital, Department of Cellular and Molecular Medicine, University of Ottawa – sequence: 2 givenname: Ivana orcidid: 0000-0002-3440-9133 surname: Mižíková fullname: Mižíková, Ivana organization: Sinclair Centre for Regenerative Medicine, Ottawa Hospital Research Institute, Department of Cellular and Molecular Medicine, University of Ottawa – sequence: 3 givenname: David P. surname: Cook fullname: Cook, David P. organization: Department of Cellular and Molecular Medicine, University of Ottawa, Cancer Therapeutics Program, Ottawa Hospital Research Institute – sequence: 4 givenname: Noora surname: Andersson fullname: Andersson, Noora organization: Pediatric Research Center, New Children’s Hospital, University of Helsinki and Helsinki University Hospital, Research Programs unit, Systems Oncology, Faculty of Medicine, University of Helsinki – sequence: 5 givenname: Chanèle orcidid: 0000-0001-8569-2218 surname: Cyr-Depauw fullname: Cyr-Depauw, Chanèle organization: Sinclair Centre for Regenerative Medicine, Ottawa Hospital Research Institute, Department of Cellular and Molecular Medicine, University of Ottawa – sequence: 6 givenname: Flore surname: Lesage fullname: Lesage, Flore organization: Sinclair Centre for Regenerative Medicine, Ottawa Hospital Research Institute, Department of Cellular and Molecular Medicine, University of Ottawa – sequence: 7 givenname: Emmi orcidid: 0000-0001-8993-2194 surname: Helle fullname: Helle, Emmi organization: Division of Pediatric Cardiology, New Children’s Hospital, Helsinki University Hospital and University of Helsinki, Pediatric Research Center, New Children’s Hospital, University of Helsinki and Helsinki University Hospital, Research Programs Unit, Stem Cells and Metabolism, University of Helsinki – sequence: 8 givenname: Laurent orcidid: 0000-0001-6848-3617 surname: Renesme fullname: Renesme, Laurent organization: Sinclair Centre for Regenerative Medicine, Ottawa Hospital Research Institute, Department of Cellular and Molecular Medicine, University of Ottawa – sequence: 9 givenname: Robert P. surname: Jankov fullname: Jankov, Robert P. organization: Department of Cellular and Molecular Medicine, University of Ottawa, Department of Pediatrics, Children’s Hospital of Eastern Ontario (CHEO) and CHEO Research Institute, University of Ottawa, Molecular Biomedicine Program, Children’s Hospital of Eastern Ontario Research Institute – sequence: 10 givenname: Markku orcidid: 0000-0001-9452-0661 surname: Heikinheimo fullname: Heikinheimo, Markku organization: Pediatric Research Center, New Children’s Hospital, University of Helsinki and Helsinki University Hospital – sequence: 11 givenname: Barbara C. orcidid: 0000-0002-7644-7189 surname: Vanderhyden fullname: Vanderhyden, Barbara C. organization: Department of Cellular and Molecular Medicine, University of Ottawa, Cancer Therapeutics Program, Ottawa Hospital Research Institute, Department of Obstetrics and Gynecology, University of Ottawa/The Ottawa Hospital – sequence: 12 givenname: Bernard orcidid: 0000-0003-1844-7145 surname: Thébaud fullname: Thébaud, Bernard email: bthebaud@toh.ca organization: Sinclair Centre for Regenerative Medicine, Ottawa Hospital Research Institute, Department of Cellular and Molecular Medicine, University of Ottawa, Department of Pediatrics, Children’s Hospital of Eastern Ontario (CHEO) and CHEO Research Institute, University of Ottawa |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/33692365$$D View this record in MEDLINE/PubMed |
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| Snippet | During late lung development, alveolar and microvascular development is finalized to enable sufficient gas exchange. Impaired late lung development manifests... It is unclear how changes in gene expression are induced by changes in oxygen levels during late lung development. Here, the authors provide data from... |
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| Title | Single cell transcriptomic analysis of murine lung development on hyperoxia-induced damage |
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