Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm

Ocean-derived, airborne microbes play important roles in Earth’s climate system and human health, yet little is known about factors controlling their transfer from the ocean to the atmosphere. Here, we study microbiomes of isolated sea spray aerosol (SSA) collected in a unique ocean–atmosphere facil...

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Veröffentlicht in:	Nature communications Jg. 9; H. 1; S. 2017 - 10
Hauptverfasser:	Michaud, Jennifer M., Thompson, Luke R., Kaul, Drishti, Espinoza, Josh L., Richter, R. Alexander, Xu, Zhenjiang Zech, Lee, Christopher, Pham, Kevin M., Beall, Charlotte M., Malfatti, Francesca, Azam, Farooq, Knight, Rob, Burkart, Michael D., Dupont, Christopher L., Prather, Kimberly A.
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	London Nature Publishing Group UK 22.05.2018 Nature Publishing Group Nature Portfolio
Schlagworte:	42 45 45/23 45/43 631/326/171/1281 639/638/169/824 Aerosols Atmosphere Bacteria Bacteria - chemistry Bacteria - classification Bacteria - genetics Climate system DNA Barcoding, Taxonomic DNA, Bacterial - genetics DNA, Viral - genetics Ecosystem Humanities and Social Sciences Hydrophobic and Hydrophilic Interactions Hydrophobicity Microbiomes Microorganisms multidisciplinary Phylogeny Phytoplankton - chemistry Phytoplankton - classification Phytoplankton - genetics Science Science (multidisciplinary) Seawater - microbiology Seawater - virology Taxa Temporal variations Transport Viruses Viruses - chemistry Viruses - classification Viruses - genetics Volatilization
ISSN:	2041-1723, 2041-1723
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Abstract	Ocean-derived, airborne microbes play important roles in Earth’s climate system and human health, yet little is known about factors controlling their transfer from the ocean to the atmosphere. Here, we study microbiomes of isolated sea spray aerosol (SSA) collected in a unique ocean–atmosphere facility and demonstrate taxon-specific aerosolization of bacteria and viruses. These trends are conserved within taxonomic orders and classes, and temporal variation in aerosolization is similarly shared by related taxa. We observe enhanced transfer into SSA of Actinobacteria, certain Gammaproteobacteria, and lipid-enveloped viruses; conversely, Flavobacteriia, some Alphaproteobacteria, and Caudovirales are generally under-represented in SSA. Viruses do not transfer to SSA as efficiently as bacteria. The enrichment of mycolic acid-coated Corynebacteriales and lipid-enveloped viruses (inferred from genomic comparisons) suggests that hydrophobic properties increase transport to the sea surface and SSA. Our results identify taxa relevant to atmospheric processes and a framework to further elucidate aerosolization mechanisms influencing microbial and viral transport pathways. Factors controlling the transfer of microbes from the ocean to the atmosphere are unclear. Here, Michaud et al. study this process in an enclosed ocean-atmosphere facility, and show that the degree of aerosolization of bacteria and viruses is taxon-specific.
AbstractList	Ocean-derived, airborne microbes play important roles in Earth’s climate system and human health, yet little is known about factors controlling their transfer from the ocean to the atmosphere. Here, we study microbiomes of isolated sea spray aerosol (SSA) collected in a unique ocean–atmosphere facility and demonstrate taxon-specific aerosolization of bacteria and viruses. These trends are conserved within taxonomic orders and classes, and temporal variation in aerosolization is similarly shared by related taxa. We observe enhanced transfer into SSA of Actinobacteria, certain Gammaproteobacteria, and lipid-enveloped viruses; conversely, Flavobacteriia, some Alphaproteobacteria, and Caudovirales are generally under-represented in SSA. Viruses do not transfer to SSA as efficiently as bacteria. The enrichment of mycolic acid-coated Corynebacteriales and lipid-enveloped viruses (inferred from genomic comparisons) suggests that hydrophobic properties increase transport to the sea surface and SSA. Our results identify taxa relevant to atmospheric processes and a framework to further elucidate aerosolization mechanisms influencing microbial and viral transport pathways. Factors controlling the transfer of microbes from the ocean to the atmosphere are unclear. Here, Michaud et al. study this process in an enclosed ocean-atmosphere facility, and show that the degree of aerosolization of bacteria and viruses is taxon-specific. Ocean-derived, airborne microbes play important roles in Earth's climate system and human health, yet little is known about factors controlling their transfer from the ocean to the atmosphere. Here, we study microbiomes of isolated sea spray aerosol (SSA) collected in a unique ocean-atmosphere facility and demonstrate taxon-specific aerosolization of bacteria and viruses. These trends are conserved within taxonomic orders and classes, and temporal variation in aerosolization is similarly shared by related taxa. We observe enhanced transfer into SSA of Actinobacteria, certain Gammaproteobacteria, and lipid-enveloped viruses; conversely, Flavobacteriia, some Alphaproteobacteria, and Caudovirales are generally under-represented in SSA. Viruses do not transfer to SSA as efficiently as bacteria. The enrichment of mycolic acid-coated Corynebacteriales and lipid-enveloped viruses (inferred from genomic comparisons) suggests that hydrophobic properties increase transport to the sea surface and SSA. Our results identify taxa relevant to atmospheric processes and a framework to further elucidate aerosolization mechanisms influencing microbial and viral transport pathways.Ocean-derived, airborne microbes play important roles in Earth's climate system and human health, yet little is known about factors controlling their transfer from the ocean to the atmosphere. Here, we study microbiomes of isolated sea spray aerosol (SSA) collected in a unique ocean-atmosphere facility and demonstrate taxon-specific aerosolization of bacteria and viruses. These trends are conserved within taxonomic orders and classes, and temporal variation in aerosolization is similarly shared by related taxa. We observe enhanced transfer into SSA of Actinobacteria, certain Gammaproteobacteria, and lipid-enveloped viruses; conversely, Flavobacteriia, some Alphaproteobacteria, and Caudovirales are generally under-represented in SSA. Viruses do not transfer to SSA as efficiently as bacteria. The enrichment of mycolic acid-coated Corynebacteriales and lipid-enveloped viruses (inferred from genomic comparisons) suggests that hydrophobic properties increase transport to the sea surface and SSA. Our results identify taxa relevant to atmospheric processes and a framework to further elucidate aerosolization mechanisms influencing microbial and viral transport pathways. Ocean-derived, airborne microbes play important roles in Earth’s climate system and human health, yet little is known about factors controlling their transfer from the ocean to the atmosphere. Here, we study microbiomes of isolated sea spray aerosol (SSA) collected in a unique ocean–atmosphere facility and demonstrate taxon-specific aerosolization of bacteria and viruses. These trends are conserved within taxonomic orders and classes, and temporal variation in aerosolization is similarly shared by related taxa. We observe enhanced transfer into SSA of Actinobacteria, certain Gammaproteobacteria, and lipid-enveloped viruses; conversely, Flavobacteriia, some Alphaproteobacteria, and Caudovirales are generally under-represented in SSA. Viruses do not transfer to SSA as efficiently as bacteria. The enrichment of mycolic acid-coated Corynebacteriales and lipid-enveloped viruses (inferred from genomic comparisons) suggests that hydrophobic properties increase transport to the sea surface and SSA. Our results identify taxa relevant to atmospheric processes and a framework to further elucidate aerosolization mechanisms influencing microbial and viral transport pathways. Ocean-derived, airborne microbes play important roles in Earth’s climate system and human health, yet little is known about factors controlling their transfer from the ocean to the atmosphere. Here, we study microbiomes of isolated sea spray aerosol (SSA) collected in a unique ocean–atmosphere facility and demonstrate taxon-specific aerosolization of bacteria and viruses. These trends are conserved within taxonomic orders and classes, and temporal variation in aerosolization is similarly shared by related taxa. We observe enhanced transfer into SSA of Actinobacteria, certain Gammaproteobacteria, and lipid-enveloped viruses; conversely, Flavobacteriia, some Alphaproteobacteria, and Caudovirales are generally under-represented in SSA. Viruses do not transfer to SSA as efficiently as bacteria. The enrichment of mycolic acid-coated Corynebacteriales and lipid-enveloped viruses (inferred from genomic comparisons) suggests that hydrophobic properties increase transport to the sea surface and SSA. Our results identify taxa relevant to atmospheric processes and a framework to further elucidate aerosolization mechanisms influencing microbial and viral transport pathways. Factors controlling the transfer of microbes from the ocean to the atmosphere are unclear. Here, Michaud et al. study this process in an enclosed ocean-atmosphere facility, and show that the degree of aerosolization of bacteria and viruses is taxon-specific. Ocean-derived, airborne microbes play important roles in Earth’s climate system and human health, yet little is known about factors controlling their transfer from the ocean to the atmosphere. Here, we study microbiomes of isolated sea spray aerosol (SSA) collected in a unique ocean–atmosphere facility and demonstrate taxon-specific aerosolization of bacteria and viruses. These trends are conserved within taxonomic orders and classes, and temporal variation in aerosolization is similarly shared by related taxa. We observe enhanced transfer into SSA of Actinobacteria, certain Gammaproteobacteria, and lipid-enveloped viruses; conversely, Flavobacteriia, some Alphaproteobacteria, and Caudovirales are generally under-represented in SSA. Viruses do not transfer to SSA as efficiently as bacteria. The enrichment of mycolic acid-coated Corynebacteriales and lipid-enveloped viruses (inferred from genomic comparisons) suggests that hydrophobic properties increase transport to the sea surface and SSA. Our results identify taxa relevant to atmospheric processes and a framework to further elucidate aerosolization mechanisms influencing microbial and viral transport pathways. Factors controlling the transfer of microbes from the ocean to the atmosphere are unclear. Here, Michaud et al. study this process in an enclosed ocean-atmosphere facility, and show that the degree of aerosolization of bacteria and viruses is taxon-specific.
ArticleNumber	2017
Author	Burkart, Michael D. Richter, R. Alexander Espinoza, Josh L. Knight, Rob Kaul, Drishti Pham, Kevin M. Prather, Kimberly A. Thompson, Luke R. Malfatti, Francesca Lee, Christopher Azam, Farooq Michaud, Jennifer M. Beall, Charlotte M. Xu, Zhenjiang Zech Dupont, Christopher L.
Author_xml	– sequence: 1 givenname: Jennifer M. surname: Michaud fullname: Michaud, Jennifer M. organization: Department of Chemistry and Biochemistry, University of California San Diego – sequence: 2 givenname: Luke R. orcidid: 0000-0002-3911-1280 surname: Thompson fullname: Thompson, Luke R. organization: Department of Pediatrics, University of California San Diego, Department of Biological Sciences and Northern Gulf Institute, University of Southern Mississippi, Ocean Chemistry and Ecosystems Division, Atlantic Oceanographic and Meteorological Laboratory, National Oceanic and Atmospheric Administration, stationed at Southwest Fisheries Science Center – sequence: 3 givenname: Drishti surname: Kaul fullname: Kaul, Drishti organization: J. Craig Venter Institute – sequence: 4 givenname: Josh L. surname: Espinoza fullname: Espinoza, Josh L. organization: J. Craig Venter Institute – sequence: 5 givenname: R. Alexander surname: Richter fullname: Richter, R. Alexander organization: J. Craig Venter Institute – sequence: 6 givenname: Zhenjiang Zech surname: Xu fullname: Xu, Zhenjiang Zech organization: Department of Pediatrics, University of California San Diego – sequence: 7 givenname: Christopher surname: Lee fullname: Lee, Christopher organization: Department of Chemistry and Biochemistry, University of California San Diego – sequence: 8 givenname: Kevin M. surname: Pham fullname: Pham, Kevin M. organization: Department of Chemistry and Biochemistry, University of California San Diego – sequence: 9 givenname: Charlotte M. surname: Beall fullname: Beall, Charlotte M. organization: Scripps Institution of Oceanography – sequence: 10 givenname: Francesca surname: Malfatti fullname: Malfatti, Francesca organization: Scripps Institution of Oceanography, Istituto Nazionale di Oceanografia e di Geofisica Sperimentale – sequence: 11 givenname: Farooq surname: Azam fullname: Azam, Farooq organization: Scripps Institution of Oceanography – sequence: 12 givenname: Rob orcidid: 0000-0002-0975-9019 surname: Knight fullname: Knight, Rob organization: Department of Pediatrics, University of California San Diego, Department of Computer Science and Engineering, University of California San Diego, Center for Microbiome Innovation, University of California San Diego – sequence: 13 givenname: Michael D. orcidid: 0000-0002-4472-2254 surname: Burkart fullname: Burkart, Michael D. email: mburkart@ucsd.edu organization: Department of Chemistry and Biochemistry, University of California San Diego – sequence: 14 givenname: Christopher L. surname: Dupont fullname: Dupont, Christopher L. email: cdupont@jcvi.org organization: J. Craig Venter Institute – sequence: 15 givenname: Kimberly A. surname: Prather fullname: Prather, Kimberly A. email: kprather@ucsd.edu organization: Department of Chemistry and Biochemistry, University of California San Diego, Scripps Institution of Oceanography
BackLink	https://www.ncbi.nlm.nih.gov/pubmed/29789621$$D View this record in MEDLINE/PubMed
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Copyright	The Author(s) 2018 2018. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
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Snippet	Ocean-derived, airborne microbes play important roles in Earth’s climate system and human health, yet little is known about factors controlling their transfer... Ocean-derived, airborne microbes play important roles in Earth's climate system and human health, yet little is known about factors controlling their transfer... Factors controlling the transfer of microbes from the ocean to the atmosphere are unclear. Here, Michaud et al. study this process in an enclosed...
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SubjectTerms	42 45 45/23 45/43 631/326/171/1281 639/638/169/824 Aerosols Atmosphere Bacteria Bacteria - chemistry Bacteria - classification Bacteria - genetics Climate system DNA Barcoding, Taxonomic DNA, Bacterial - genetics DNA, Viral - genetics Ecosystem Humanities and Social Sciences Hydrophobic and Hydrophilic Interactions Hydrophobicity Microbiomes Microorganisms multidisciplinary Phylogeny Phytoplankton - chemistry Phytoplankton - classification Phytoplankton - genetics Science Science (multidisciplinary) Seawater - microbiology Seawater - virology Taxa Temporal variations Transport Viruses Viruses - chemistry Viruses - classification Viruses - genetics Volatilization
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Title	Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm
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