Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION -3.1
Methods are presented that detect three types of aberrations in single-particle cryo-EM data sets: symmetrical and antisymmetrical optical aberrations and magnification anisotropy. Because these methods only depend on the availability of a preliminary 3D reconstruction from the data, they can be use...
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| Vydané v: | IUCrJ Ročník 7; číslo 2; s. 253 - 267 |
|---|---|
| Hlavní autori: | , , |
| Médium: | Journal Article |
| Jazyk: | English |
| Vydavateľské údaje: |
England
International Union of Crystallography
01.03.2020
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| Predmet: | |
| ISSN: | 2052-2525, 2052-2525 |
| On-line prístup: | Získať plný text |
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| Abstract | Methods are presented that detect three types of aberrations in single-particle cryo-EM data sets: symmetrical and antisymmetrical optical aberrations and magnification anisotropy. Because these methods only depend on the availability of a preliminary 3D reconstruction from the data, they can be used to correct for these aberrations for any given cryo-EM data set,
a posteriori
. Using five publicly available data sets, it is shown that considering these aberrations improves the resolution of the 3D reconstruction when these effects are present. The methods are implemented in version 3.1 of the open-source software package
RELION
. |
|---|---|
| AbstractList | Methods are presented that detect three types of aberrations in single-particle cryo-EM data sets: symmetrical and antisymmetrical optical aberrations and magnification anisotropy. Because these methods only depend on the availability of a preliminary 3D reconstruction from the data, they can be used to correct for these aberrations for any given cryo-EM data set,
a posteriori
. Using five publicly available data sets, it is shown that considering these aberrations improves the resolution of the 3D reconstruction when these effects are present. The methods are implemented in version 3.1 of the open-source software package
RELION
. Methods are presented that detect three types of aberrations in single-particle cryo-EM data sets: symmetrical and antisymmetrical optical aberrations and magnification anisotropy. Because these methods only depend on the availability of a preliminary 3D reconstruction from the data, they can be used to correct for these aberrations for any given cryo-EM data set, a posteriori. Using five publicly available data sets, it is shown that considering these aberrations improves the resolution of the 3D reconstruction when these effects are present. The methods are implemented in version 3.1 of the open-source software package RELION. Methods are presented that estimate symmetrical and antisymmetrical optical aberrations, as well as magnification anisotropy, in a cryo-EM data set. Considering these effects improves the resolution of the 3D reconstruction when these effects are present. Methods are presented that detect three types of aberrations in single-particle cryo-EM data sets: symmetrical and antisymmetrical optical aberrations and magnification anisotropy. Because these methods only depend on the availability of a preliminary 3D reconstruction from the data, they can be used to correct for these aberrations for any given cryo-EM data set, a posteriori. Using five publicly available data sets, it is shown that considering these aberrations improves the resolution of the 3D reconstruction when these effects are present. The methods are implemented in version 3.1 of the open-source software package RELION. Methods are presented that detect three types of aberrations in single-particle cryo-EM data sets: symmetrical and antisymmetrical optical aberrations and magnification anisotropy. Because these methods only depend on the availability of a preliminary 3D reconstruction from the data, they can be used to correct for these aberrations for any given cryo-EM data set, a posteriori. Using five publicly available data sets, it is shown that considering these aberrations improves the resolution of the 3D reconstruction when these effects are present. The methods are implemented in version 3.1 of the open-source software package RELION. Keywords: cryo-EM; RELION; aberrations; anisotropic magnification. Methods are presented that detect three types of aberrations in single-particle cryo-EM data sets: symmetrical and antisymmetrical optical aberrations and magnification anisotropy. Because these methods only depend on the availability of a preliminary 3D reconstruction from the data, they can be used to correct for these aberrations for any given cryo-EM data set, a posteriori. Using five publicly available data sets, it is shown that considering these aberrations improves the resolution of the 3D reconstruction when these effects are present. The methods are implemented in version 3.1 of the open-source software package RELION.Methods are presented that detect three types of aberrations in single-particle cryo-EM data sets: symmetrical and antisymmetrical optical aberrations and magnification anisotropy. Because these methods only depend on the availability of a preliminary 3D reconstruction from the data, they can be used to correct for these aberrations for any given cryo-EM data set, a posteriori. Using five publicly available data sets, it is shown that considering these aberrations improves the resolution of the 3D reconstruction when these effects are present. The methods are implemented in version 3.1 of the open-source software package RELION. Methods are presented that detect three types of aberrations in single-particle cryo-EM data sets: symmetrical and antisymmetrical optical aberrations and magnification anisotropy. Because these methods only depend on the availability of a preliminary 3D reconstruction from the data, they can be used to correct for these aberrations for any given cryo-EM data set, . Using five publicly available data sets, it is shown that considering these aberrations improves the resolution of the 3D reconstruction when these effects are present. The methods are implemented in version 3.1 of the open-source software package . |
| Audience | Academic |
| Author | Zivanov, Jasenko Nakane, Takanori Scheres, Sjors H. W. |
| Author_xml | – sequence: 1 givenname: Jasenko surname: Zivanov fullname: Zivanov, Jasenko – sequence: 2 givenname: Takanori orcidid: 0000-0003-2697-2767 surname: Nakane fullname: Nakane, Takanori – sequence: 3 givenname: Sjors H. W. surname: Scheres fullname: Scheres, Sjors H. W. |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/32148853$$D View this record in MEDLINE/PubMed |
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| Snippet | Methods are presented that detect three types of aberrations in single-particle cryo-EM data sets: symmetrical and antisymmetrical optical aberrations and... Methods are presented that estimate symmetrical and antisymmetrical optical aberrations, as well as magnification anisotropy, in a cryo-EM data set.... |
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| SubjectTerms | Aberration aberrations Algorithms Analysis anisotropic magnification Anisotropy cryo-em Datasets Detection equipment Microscopy Open source software Optical equipment Radiation (Physics) Reconstruction relion Research Papers Source code Technology |
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| Title | Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION -3.1 |
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