Efficient gene orthology inference via large-scale rearrangements

Background Recently we developed a gene orthology inference tool based on genome rearrangements ( Journal of Bioinformatics and Computational Biology 19:6, 2021). Given a set of genomes our method first computes all pairwise gene similarities. Then it runs pairwise ILP comparisons to compute optimal...

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Bibliographic Details
Published in:	Algorithms for molecular biology Vol. 18; no. 1; pp. 1 - 18
Main Authors:	Rubert, Diego P., Braga, Marília D. V.
Format:	Journal Article
Language:	English
Published:	London BioMed Central 28.09.2023 BioMed Central Ltd Springer Nature B.V BMC
Subjects:	Algorithms Analysis Animal genetics Assemblies Bioinformatics Biomedical and Life Sciences Capping Cellular and Medical Topics Chromosomes Clustering Comparative genomics Computation Computational Biology/Bioinformatics Double-cut-and-join Fruit flies Fruits Gene families Gene orthology Genes Genetic research Genomes Genomics Heuristic Indels Inference Life Sciences Orthology Physiological Problem solving Segments Selected papers from WABI 2022 Similarity Comparative genomics Double-cut-and-join Indels Gene orthology
ISSN:	1748-7188, 1748-7188
Online Access:	Get full text
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