Genome-wide association studies of grain quality traits in maize
High quality is the main goal of today’s maize breeding and the investigation of grain quality traits would help to breed high-quality varieties in maize. In this study, genome-wide association studies in a set of 248 diverse inbred lines were performed with 83,057 single nucleotide polymorphisms (S...
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| Vydané v: | Scientific reports Ročník 11; číslo 1; s. 9797 - 12 |
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| Hlavní autori: | , , , , , , |
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| Jazyk: | English |
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Nature Publishing Group UK
07.05.2021
Nature Publishing Group Nature Portfolio |
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| ISSN: | 2045-2322, 2045-2322 |
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| Abstract | High quality is the main goal of today’s maize breeding and the investigation of grain quality traits would help to breed high-quality varieties in maize. In this study, genome-wide association studies in a set of 248 diverse inbred lines were performed with 83,057 single nucleotide polymorphisms (SNPs), and five grain quality traits were investigated in diverse environments for two years. The results showed that maize inbred lines showed substantial natural variations of grain quality and these traits showed high broad-sense heritability. A total of 49 SNPs were found to be significantly associated with grain quality traits. Among these SNPs, four co-localized sites were commonly detected by multiple traits. The candidate genes which were searched for can be classified into 11 biological processes, 13 cellular components, and 6 molecular functions. Finally, we found 29 grain quality-related genes. These genes and the SNPs identified in the study would offer essential information for high-quality varieties breeding programs in maize. |
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| AbstractList | High quality is the main goal of today’s maize breeding and the investigation of grain quality traits would help to breed high-quality varieties in maize. In this study, genome-wide association studies in a set of 248 diverse inbred lines were performed with 83,057 single nucleotide polymorphisms (SNPs), and five grain quality traits were investigated in diverse environments for two years. The results showed that maize inbred lines showed substantial natural variations of grain quality and these traits showed high broad-sense heritability. A total of 49 SNPs were found to be significantly associated with grain quality traits. Among these SNPs, four co-localized sites were commonly detected by multiple traits. The candidate genes which were searched for can be classified into 11 biological processes, 13 cellular components, and 6 molecular functions. Finally, we found 29 grain quality-related genes. These genes and the SNPs identified in the study would offer essential information for high-quality varieties breeding programs in maize. Abstract High quality is the main goal of today’s maize breeding and the investigation of grain quality traits would help to breed high-quality varieties in maize. In this study, genome-wide association studies in a set of 248 diverse inbred lines were performed with 83,057 single nucleotide polymorphisms (SNPs), and five grain quality traits were investigated in diverse environments for two years. The results showed that maize inbred lines showed substantial natural variations of grain quality and these traits showed high broad-sense heritability. A total of 49 SNPs were found to be significantly associated with grain quality traits. Among these SNPs, four co-localized sites were commonly detected by multiple traits. The candidate genes which were searched for can be classified into 11 biological processes, 13 cellular components, and 6 molecular functions. Finally, we found 29 grain quality-related genes. These genes and the SNPs identified in the study would offer essential information for high-quality varieties breeding programs in maize. High quality is the main goal of today's maize breeding and the investigation of grain quality traits would help to breed high-quality varieties in maize. In this study, genome-wide association studies in a set of 248 diverse inbred lines were performed with 83,057 single nucleotide polymorphisms (SNPs), and five grain quality traits were investigated in diverse environments for two years. The results showed that maize inbred lines showed substantial natural variations of grain quality and these traits showed high broad-sense heritability. A total of 49 SNPs were found to be significantly associated with grain quality traits. Among these SNPs, four co-localized sites were commonly detected by multiple traits. The candidate genes which were searched for can be classified into 11 biological processes, 13 cellular components, and 6 molecular functions. Finally, we found 29 grain quality-related genes. These genes and the SNPs identified in the study would offer essential information for high-quality varieties breeding programs in maize.High quality is the main goal of today's maize breeding and the investigation of grain quality traits would help to breed high-quality varieties in maize. In this study, genome-wide association studies in a set of 248 diverse inbred lines were performed with 83,057 single nucleotide polymorphisms (SNPs), and five grain quality traits were investigated in diverse environments for two years. The results showed that maize inbred lines showed substantial natural variations of grain quality and these traits showed high broad-sense heritability. A total of 49 SNPs were found to be significantly associated with grain quality traits. Among these SNPs, four co-localized sites were commonly detected by multiple traits. The candidate genes which were searched for can be classified into 11 biological processes, 13 cellular components, and 6 molecular functions. Finally, we found 29 grain quality-related genes. These genes and the SNPs identified in the study would offer essential information for high-quality varieties breeding programs in maize. |
| ArticleNumber | 9797 |
| Author | Zhao, Yongfeng Jia, Xiaoyan Huang, Yaqun Zheng, Yunxiao Yuan, Fan Guo, Jinjie Zhu, Liying |
| Author_xml | – sequence: 1 givenname: Yunxiao surname: Zheng fullname: Zheng, Yunxiao organization: College of Agronomy, Hebei Agricultural University, Hebei Sub-Center of National Maize Improvement Center, State Key Laboratory of North China Crop Improvement and Regulation – sequence: 2 givenname: Fan surname: Yuan fullname: Yuan, Fan organization: College of Agronomy, Hebei Agricultural University, Hebei Sub-Center of National Maize Improvement Center, State Key Laboratory of North China Crop Improvement and Regulation – sequence: 3 givenname: Yaqun surname: Huang fullname: Huang, Yaqun organization: College of Agronomy, Hebei Agricultural University, Hebei Sub-Center of National Maize Improvement Center, State Key Laboratory of North China Crop Improvement and Regulation – sequence: 4 givenname: Yongfeng surname: Zhao fullname: Zhao, Yongfeng organization: College of Agronomy, Hebei Agricultural University, Hebei Sub-Center of National Maize Improvement Center, State Key Laboratory of North China Crop Improvement and Regulation – sequence: 5 givenname: Xiaoyan surname: Jia fullname: Jia, Xiaoyan organization: College of Agronomy, Hebei Agricultural University, Hebei Sub-Center of National Maize Improvement Center, State Key Laboratory of North China Crop Improvement and Regulation – sequence: 6 givenname: Liying surname: Zhu fullname: Zhu, Liying organization: College of Agronomy, Hebei Agricultural University, Hebei Sub-Center of National Maize Improvement Center, State Key Laboratory of North China Crop Improvement and Regulation – sequence: 7 givenname: Jinjie surname: Guo fullname: Guo, Jinjie email: guojinjie512@163.com organization: College of Agronomy, Hebei Agricultural University, Hebei Sub-Center of National Maize Improvement Center, State Key Laboratory of North China Crop Improvement and Regulation |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/33963265$$D View this record in MEDLINE/PubMed |
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| Snippet | High quality is the main goal of today’s maize breeding and the investigation of grain quality traits would help to breed high-quality varieties in maize. In... High quality is the main goal of today's maize breeding and the investigation of grain quality traits would help to breed high-quality varieties in maize. In... Abstract High quality is the main goal of today’s maize breeding and the investigation of grain quality traits would help to breed high-quality varieties in... |
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| Title | Genome-wide association studies of grain quality traits in maize |
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