Actinidia chlorotic ringspot‐associated virus: a novel emaravirus infecting kiwifruit plants

Summary By integrating next‐generation sequencing (NGS), bioinformatics, electron microscopy and conventional molecular biology tools, a new virus infecting kiwifruit vines has been identified and characterized. Being associated with double‐membrane‐bound bodies in infected tissues and having a geno...

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Vydané v:	Molecular plant pathology Ročník 18; číslo 4; s. 569 - 581
Hlavní autori:	Zheng, Yazhou, Navarro, Beatriz, Wang, Guoping, Wang, Yanxiang, Yang, Zuokun, Xu, Wenxing, Zhu, Chenxi, Wang, Liping, Serio, Francesco Di, Hong, Ni
Médium:	Journal Article
Jazyk:	English
Vydavateľské údaje:	England John Wiley & Sons, Inc 01.05.2017 John Wiley and Sons Inc
Predmet:	AcCRaV Actinidia Actinidia - virology Base Sequence Bioassays biogenesis Bioinformatics Cell Membrane - metabolism China chlorotic ringspot electron microscopy Emaravirus family Bunyaviridae Gene Library Genes genome Genome, Viral genomics genus Emaravirus High-Throughput Nucleotide Sequencing kiwifruit leaves Molecular biology new species Nicotiana - virology Nicotiana benthamiana nucleotides open reading frames Original Phylogeny Plant Diseases - virology plant diseases and disorders Plant Leaves - ultrastructure Plant Leaves - virology plant viruses Plant Viruses - genetics Plant Viruses - physiology proteins Reproducibility of Results RNA RNA interference RNA, Viral - genetics surveys tissues vines viruses China chlorotic ringspot family Bunyaviridae Actinidia AcCRaV genus Emaravirus
ISSN:	1464-6722, 1364-3703, 1364-3703
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Abstract	Summary By integrating next‐generation sequencing (NGS), bioinformatics, electron microscopy and conventional molecular biology tools, a new virus infecting kiwifruit vines has been identified and characterized. Being associated with double‐membrane‐bound bodies in infected tissues and having a genome composed of RNA segments, each one containing a single open reading frame in negative polarity, this virus shows the typical features of members of the genus Emaravirus. Five genomic RNA segments were identified. Additional molecular signatures in the viral RNAs and in the proteins they encode, together with data from phylogenetic analyses, support the proposal of creating a new species in the genus Emaravirus to classify the novel virus, which is tentatively named Actinidia chlorotic ringspot‐associated virus (AcCRaV). Bioassays showed that AcCRaV is mechanically transmissible to Nicotiana benthamiana plants which, in turn, may develop chlorotic spots and ringspots. Field surveys disclosed the presence of AcCRaV in four different species of kiwifruit vines in five different provinces of central and western China, and support the association of the novel virus with symptoms of leaf chlorotic ringspots in Actinidia. Data on the molecular features of small RNAs of 21–24 nucleotides, derived from AcCRaV RNAs targeted by host RNA silencing mechanisms, are also reported, and possible molecular pathways involved in their biogenesis are discussed.
AbstractList	Summary By integrating next‐generation sequencing (NGS), bioinformatics, electron microscopy and conventional molecular biology tools, a new virus infecting kiwifruit vines has been identified and characterized. Being associated with double‐membrane‐bound bodies in infected tissues and having a genome composed of RNA segments, each one containing a single open reading frame in negative polarity, this virus shows the typical features of members of the genus Emaravirus. Five genomic RNA segments were identified. Additional molecular signatures in the viral RNAs and in the proteins they encode, together with data from phylogenetic analyses, support the proposal of creating a new species in the genus Emaravirus to classify the novel virus, which is tentatively named Actinidia chlorotic ringspot‐associated virus (AcCRaV). Bioassays showed that AcCRaV is mechanically transmissible to Nicotiana benthamiana plants which, in turn, may develop chlorotic spots and ringspots. Field surveys disclosed the presence of AcCRaV in four different species of kiwifruit vines in five different provinces of central and western China, and support the association of the novel virus with symptoms of leaf chlorotic ringspots in Actinidia. Data on the molecular features of small RNAs of 21–24 nucleotides, derived from AcCRaV RNAs targeted by host RNA silencing mechanisms, are also reported, and possible molecular pathways involved in their biogenesis are discussed. By integrating next-generation sequencing (NGS), bioinformatics, electron microscopy and conventional molecular biology tools, a new virus infecting kiwifruit vines has been identified and characterized. Being associated with double-membrane-bound bodies in infected tissues and having a genome composed of RNA segments, each one containing a single open reading frame in negative polarity, this virus shows the typical features of members of the genus Emaravirus. Five genomic RNA segments were identified. Additional molecular signatures in the viral RNAs and in the proteins they encode, together with data from phylogenetic analyses, support the proposal of creating a new species in the genus Emaravirus to classify the novel virus, which is tentatively named Actinidia chlorotic ringspot-associated virus (AcCRaV). Bioassays showed that AcCRaV is mechanically transmissible to Nicotiana benthamiana plants which, in turn, may develop chlorotic spots and ringspots. Field surveys disclosed the presence of AcCRaV in four different species of kiwifruit vines in five different provinces of central and western China, and support the association of the novel virus with symptoms of leaf chlorotic ringspots in Actinidia. Data on the molecular features of small RNAs of 21-24 nucleotides, derived from AcCRaV RNAs targeted by host RNA silencing mechanisms, are also reported, and possible molecular pathways involved in their biogenesis are discussed. Summary By integrating next-generation sequencing (NGS), bioinformatics, electron microscopy and conventional molecular biology tools, a new virus infecting kiwifruit vines has been identified and characterized. Being associated with double-membrane-bound bodies in infected tissues and having a genome composed of RNA segments, each one containing a single open reading frame in negative polarity, this virus shows the typical features of members of the genus Emaravirus. Five genomic RNA segments were identified. Additional molecular signatures in the viral RNAs and in the proteins they encode, together with data from phylogenetic analyses, support the proposal of creating a new species in the genus Emaravirus to classify the novel virus, which is tentatively named Actinidia chlorotic ringspot-associated virus (AcCRaV). Bioassays showed that AcCRaV is mechanically transmissible to Nicotiana benthamiana plants which, in turn, may develop chlorotic spots and ringspots. Field surveys disclosed the presence of AcCRaV in four different species of kiwifruit vines in five different provinces of central and western China, and support the association of the novel virus with symptoms of leaf chlorotic ringspots in Actinidia. Data on the molecular features of small RNAs of 21-24 nucleotides, derived from AcCRaV RNAs targeted by host RNA silencing mechanisms, are also reported, and possible molecular pathways involved in their biogenesis are discussed. By integrating next-generation sequencing (NGS), bioinformatics, electron microscopy and conventional molecular biology tools, a new virus infecting kiwifruit vines has been identified and characterized. Being associated with double-membrane-bound bodies in infected tissues and having a genome composed of RNA segments, each one containing a single open reading frame in negative polarity, this virus shows the typical features of members of the genus Emaravirus. Five genomic RNA segments were identified. Additional molecular signatures in the viral RNAs and in the proteins they encode, together with data from phylogenetic analyses, support the proposal of creating a new species in the genus Emaravirus to classify the novel virus, which is tentatively named Actinidia chlorotic ringspot-associated virus (AcCRaV). Bioassays showed that AcCRaV is mechanically transmissible to Nicotiana benthamiana plants which, in turn, may develop chlorotic spots and ringspots. Field surveys disclosed the presence of AcCRaV in four different species of kiwifruit vines in five different provinces of central and western China, and support the association of the novel virus with symptoms of leaf chlorotic ringspots in Actinidia. Data on the molecular features of small RNAs of 21-24 nucleotides, derived from AcCRaV RNAs targeted by host RNA silencing mechanisms, are also reported, and possible molecular pathways involved in their biogenesis are discussed.By integrating next-generation sequencing (NGS), bioinformatics, electron microscopy and conventional molecular biology tools, a new virus infecting kiwifruit vines has been identified and characterized. Being associated with double-membrane-bound bodies in infected tissues and having a genome composed of RNA segments, each one containing a single open reading frame in negative polarity, this virus shows the typical features of members of the genus Emaravirus. Five genomic RNA segments were identified. Additional molecular signatures in the viral RNAs and in the proteins they encode, together with data from phylogenetic analyses, support the proposal of creating a new species in the genus Emaravirus to classify the novel virus, which is tentatively named Actinidia chlorotic ringspot-associated virus (AcCRaV). Bioassays showed that AcCRaV is mechanically transmissible to Nicotiana benthamiana plants which, in turn, may develop chlorotic spots and ringspots. Field surveys disclosed the presence of AcCRaV in four different species of kiwifruit vines in five different provinces of central and western China, and support the association of the novel virus with symptoms of leaf chlorotic ringspots in Actinidia. Data on the molecular features of small RNAs of 21-24 nucleotides, derived from AcCRaV RNAs targeted by host RNA silencing mechanisms, are also reported, and possible molecular pathways involved in their biogenesis are discussed.
Author	Yang, Zuokun Serio, Francesco Di Hong, Ni Navarro, Beatriz Wang, Liping Zhu, Chenxi Zheng, Yazhou Wang, Yanxiang Xu, Wenxing Wang, Guoping
AuthorAffiliation	2 Institute for Sustainable Plant Protection, CNR Bari 70126 Italy 1 National Key Laboratory of Agromicrobiology Huazhong Agricultural University Wuhan Hubei 430070 China
AuthorAffiliation_xml	– name: 1 National Key Laboratory of Agromicrobiology Huazhong Agricultural University Wuhan Hubei 430070 China – name: 2 Institute for Sustainable Plant Protection, CNR Bari 70126 Italy
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Snippet	Summary By integrating next‐generation sequencing (NGS), bioinformatics, electron microscopy and conventional molecular biology tools, a new virus infecting... By integrating next‐generation sequencing (NGS), bioinformatics, electron microscopy and conventional molecular biology tools, a new virus infecting kiwifruit... By integrating next-generation sequencing (NGS), bioinformatics, electron microscopy and conventional molecular biology tools, a new virus infecting kiwifruit... Summary By integrating next-generation sequencing (NGS), bioinformatics, electron microscopy and conventional molecular biology tools, a new virus infecting...
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SubjectTerms	AcCRaV Actinidia Actinidia - virology Base Sequence Bioassays biogenesis Bioinformatics Cell Membrane - metabolism China chlorotic ringspot electron microscopy Emaravirus family Bunyaviridae Gene Library Genes genome Genome, Viral genomics genus Emaravirus High-Throughput Nucleotide Sequencing kiwifruit leaves Molecular biology new species Nicotiana - virology Nicotiana benthamiana nucleotides open reading frames Original Phylogeny Plant Diseases - virology plant diseases and disorders Plant Leaves - ultrastructure Plant Leaves - virology plant viruses Plant Viruses - genetics Plant Viruses - physiology proteins Reproducibility of Results RNA RNA interference RNA, Viral - genetics surveys tissues vines viruses
Title	Actinidia chlorotic ringspot‐associated virus: a novel emaravirus infecting kiwifruit plants
URI	https://onlinelibrary.wiley.com/doi/abs/10.1111%2Fmpp.12421 https://www.ncbi.nlm.nih.gov/pubmed/27125218 https://www.proquest.com/docview/1883844315 https://www.proquest.com/docview/1826684055 https://www.proquest.com/docview/1891875867 https://www.proquest.com/docview/2020892997 https://pubmed.ncbi.nlm.nih.gov/PMC6638214
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