Extensive Diversity of Viruses in Millipedes Collected in the Dong Nai Biosphere Reserve (Vietnam)
Advances in sequencing technologies and bioinformatics have led to breakthroughs in the study of virus biodiversity. Millipedes (Diplopoda, Myriapoda, Arthropoda) include more than 12,000 extant species, yet data on virus diversity in Diplopoda are scarce. This study aimed to explore the virome of t...
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| Vydáno v: | Viruses Ročník 16; číslo 9; s. 1486 |
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19.09.2024
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| ISSN: | 1999-4915, 1999-4915 |
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| Abstract | Advances in sequencing technologies and bioinformatics have led to breakthroughs in the study of virus biodiversity. Millipedes (Diplopoda, Myriapoda, Arthropoda) include more than 12,000 extant species, yet data on virus diversity in Diplopoda are scarce. This study aimed to explore the virome of the millipedes collected in the Dong Nai Biosphere Reserve in Vietnam. We studied 14 species of millipedes and managed to assemble and annotate the complete coding genomes of 16 novel viruses, the partial coding genomes of 10 more viruses, and several fragmented viral sequences, which may indicate the presence of about 54 more viruses in the studied samples. Among the complete and partial genomes, 27% were putative members of the order Picornavirales. Most of the discovered viruses were very distant from the viruses currently present in the relevant databases. At least eight viruses meet the criteria to be recognized as a new species by the International Committee on Taxonomy of Viruses, and, for two of them, a higher taxonomic status (genus and even family) can be suggested. |
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| AbstractList | Advances in sequencing technologies and bioinformatics have led to breakthroughs in the study of virus biodiversity. Millipedes (Diplopoda, Myriapoda, Arthropoda) include more than 12,000 extant species, yet data on virus diversity in Diplopoda are scarce. This study aimed to explore the virome of the millipedes collected in the Dong Nai Biosphere Reserve in Vietnam. We studied 14 species of millipedes and managed to assemble and annotate the complete coding genomes of 16 novel viruses, the partial coding genomes of 10 more viruses, and several fragmented viral sequences, which may indicate the presence of about 54 more viruses in the studied samples. Among the complete and partial genomes, 27% were putative members of the order
. Most of the discovered viruses were very distant from the viruses currently present in the relevant databases. At least eight viruses meet the criteria to be recognized as a new species by the International Committee on Taxonomy of Viruses, and, for two of them, a higher taxonomic status (genus and even family) can be suggested. Advances in sequencing technologies and bioinformatics have led to breakthroughs in the study of virus biodiversity. Millipedes (Diplopoda, Myriapoda, Arthropoda) include more than 12,000 extant species, yet data on virus diversity in Diplopoda are scarce. This study aimed to explore the virome of the millipedes collected in the Dong Nai Biosphere Reserve in Vietnam. We studied 14 species of millipedes and managed to assemble and annotate the complete coding genomes of 16 novel viruses, the partial coding genomes of 10 more viruses, and several fragmented viral sequences, which may indicate the presence of about 54 more viruses in the studied samples. Among the complete and partial genomes, 27% were putative members of the order Picornavirales. Most of the discovered viruses were very distant from the viruses currently present in the relevant databases. At least eight viruses meet the criteria to be recognized as a new species by the International Committee on Taxonomy of Viruses, and, for two of them, a higher taxonomic status (genus and even family) can be suggested. Advances in sequencing technologies and bioinformatics have led to breakthroughs in the study of virus biodiversity. Millipedes (Diplopoda, Myriapoda, Arthropoda) include more than 12,000 extant species, yet data on virus diversity in Diplopoda are scarce. This study aimed to explore the virome of the millipedes collected in the Dong Nai Biosphere Reserve in Vietnam. We studied 14 species of millipedes and managed to assemble and annotate the complete coding genomes of 16 novel viruses, the partial coding genomes of 10 more viruses, and several fragmented viral sequences, which may indicate the presence of about 54 more viruses in the studied samples. Among the complete and partial genomes, 27% were putative members of the order Picornavirales. Most of the discovered viruses were very distant from the viruses currently present in the relevant databases. At least eight viruses meet the criteria to be recognized as a new species by the International Committee on Taxonomy of Viruses, and, for two of them, a higher taxonomic status (genus and even family) can be suggested.Advances in sequencing technologies and bioinformatics have led to breakthroughs in the study of virus biodiversity. Millipedes (Diplopoda, Myriapoda, Arthropoda) include more than 12,000 extant species, yet data on virus diversity in Diplopoda are scarce. This study aimed to explore the virome of the millipedes collected in the Dong Nai Biosphere Reserve in Vietnam. We studied 14 species of millipedes and managed to assemble and annotate the complete coding genomes of 16 novel viruses, the partial coding genomes of 10 more viruses, and several fragmented viral sequences, which may indicate the presence of about 54 more viruses in the studied samples. Among the complete and partial genomes, 27% were putative members of the order Picornavirales. Most of the discovered viruses were very distant from the viruses currently present in the relevant databases. At least eight viruses meet the criteria to be recognized as a new species by the International Committee on Taxonomy of Viruses, and, for two of them, a higher taxonomic status (genus and even family) can be suggested. |
| Audience | Academic |
| Author | Tiunov, Alexei V. Semenyuk, Irina I. Karganova, Galina G. Litov, Alexander G. Thinh, Nguyen Van Polienko, Alexandra E. Belova, Oxana A. |
| AuthorAffiliation | 4 Southern Branch, Russian–Vietnamese Tropical Scientific and Technological Center, Ho Chi Minh City 70001, Vietnam; thinh39b@gmail.com 1 Laboratory of Biology of Arboviruses, FSASI Chumakov Federal Scientific Center for Research and Development of Immune-and-Biological Products of RAS, 108819 Moscow, Russia; mikasusha@bk.ru (O.A.B.); polienko.ae@yandex.ru (A.E.P.); karganova@bk.ru (G.G.K.) 3 A.N. Severtsov Institute of Ecology and Evolution, 119071 Moscow, Russia; free-cat@bk.ru (I.I.S.); a_tiunov@mail.ru (A.V.T.) 2 Institute for Translational Medicine and Biotechnology, Sechenov University, 119991 Moscow, Russia |
| AuthorAffiliation_xml | – name: 3 A.N. Severtsov Institute of Ecology and Evolution, 119071 Moscow, Russia; free-cat@bk.ru (I.I.S.); a_tiunov@mail.ru (A.V.T.) – name: 1 Laboratory of Biology of Arboviruses, FSASI Chumakov Federal Scientific Center for Research and Development of Immune-and-Biological Products of RAS, 108819 Moscow, Russia; mikasusha@bk.ru (O.A.B.); polienko.ae@yandex.ru (A.E.P.); karganova@bk.ru (G.G.K.) – name: 2 Institute for Translational Medicine and Biotechnology, Sechenov University, 119991 Moscow, Russia – name: 4 Southern Branch, Russian–Vietnamese Tropical Scientific and Technological Center, Ho Chi Minh City 70001, Vietnam; thinh39b@gmail.com |
| Author_xml | – sequence: 1 givenname: Alexander G. surname: Litov fullname: Litov, Alexander G. – sequence: 2 givenname: Irina I. surname: Semenyuk fullname: Semenyuk, Irina I. – sequence: 3 givenname: Oxana A. orcidid: 0000-0002-9040-0774 surname: Belova fullname: Belova, Oxana A. – sequence: 4 givenname: Alexandra E. surname: Polienko fullname: Polienko, Alexandra E. – sequence: 5 givenname: Nguyen Van orcidid: 0000-0002-5376-830X surname: Thinh fullname: Thinh, Nguyen Van – sequence: 6 givenname: Galina G. surname: Karganova fullname: Karganova, Galina G. – sequence: 7 givenname: Alexei V. orcidid: 0000-0003-2400-3559 surname: Tiunov fullname: Tiunov, Alexei V. |
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| Keywords | zhaoviruses Mitoviridae Alternaviridae Cat Tien National Park Xinmoviridae tropical forest Qinviridae Nairoviridae Secoviridae Picornavirales |
| Language | English |
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| Title | Extensive Diversity of Viruses in Millipedes Collected in the Dong Nai Biosphere Reserve (Vietnam) |
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