A modular architecture for organizing, processing and sharing neurophysiology data

We describe an architecture for organizing, integrating and sharing neurophysiology data within a single laboratory or across a group of collaborators. It comprises a database linking data files to metadata and electronic laboratory notes; a module collecting data from multiple laboratories into one...

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Bibliographic Details
Published in:Nature Methods Vol. 20; no. 3; pp. 403 - 407
Main Authors: Bonacchi, Niccolò, Chapuis, Gaelle A., Churchland, Anne K., DeWitt, Eric E. J., Faulkner, Mayo, Harris, Kenneth D., Huntenburg, Julia M., Hunter, Max, Laranjeira, Inês C., Rossant, Cyrille, Sasaki, Maho, Schartner, Michael M., Shen, Shan, Steinmetz, Nicholas A., Walker, Edgar Y., West, Steven J., Winter, Olivier, Wells, Miles J.
Format: Journal Article
Language:English
Published: New York Springer Science and Business Media LLC 01.03.2023
Nature Publishing Group US
Nature Publishing Group
Subjects:
631/114/2401
631/1647/2198
631/1647/334/1874/345
631/378/116
Automation
Basic Behavioral and Social Science
Behavioral and Social Science
Bioinformatics
Biological Microscopy
Biological Sciences
Biological Techniques
Biomedical and Life Sciences
Biomedical Engineering/Biotechnology
Brief Communication
Collaboration
Communication
Data collection
Databases, Factual
Developmental Biology
Electrophysiology
Experiments
Factual
International Brain Laboratory
Laboratories
Life Sciences
Medical and Health Sciences
Metadata
Modules
Neurophysiology
Neurosciences
Proteomics
Quality control
Servers
Software
Technology
Websites
ISSN:1548-7091, 1548-7105, 1548-7105
Online Access:Get full text
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Description
Summary:We describe an architecture for organizing, integrating and sharing neurophysiology data within a single laboratory or across a group of collaborators. It comprises a database linking data files to metadata and electronic laboratory notes; a module collecting data from multiple laboratories into one location; a protocol for searching and sharing data and a module for automatic analyses that populates a website. These modules can be used together or individually, by single laboratories or worldwide collaborations. A modular architecture for managing and sharing electrophysiology, behavior, colony management and other data has been built to support individual laboratories or large consortia.
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ISSN:1548-7091
1548-7105
1548-7105
DOI:10.1038/s41592-022-01742-6