Shorthand notation for lipid structures derived from mass spectrometry
There is a need for a standardized, practical annotation for structures of lipid species derived from mass spectrometric approaches; i.e., for high-throughput data obtained from instruments operating in either high- or low-resolution modes. This proposal is based on common, officially accepted terms...
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| Vydáno v: | Journal of lipid research Ročník 54; číslo 6; s. 1523 - 1530 |
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| Hlavní autoři: | , , , , , , , |
| Médium: | Journal Article |
| Jazyk: | angličtina |
| Vydáno: |
United States
Elsevier
01.06.2013
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| Témata: | |
| ISSN: | 1539-7262, 0022-2275, 1539-7262 |
| On-line přístup: | Získat plný text |
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| Abstract | There is a need for a standardized, practical annotation for structures of lipid species derived from mass spectrometric approaches; i.e., for high-throughput data obtained from instruments operating in either high- or low-resolution modes. This proposal is based on common, officially accepted terms and builds upon the LIPID MAPS terminology. It aims to add defined levels of information below the LIPID MAPS nomenclature, as detailed chemical structures, including stereochemistry, are usually not automatically provided by mass spectrometric analysis. To this end, rules for lipid species annotation were developed that reflect the structural information derived from the analysis. For example, commonly used head group-specific analysis of glycerophospholipids (GP) by low-resolution instruments is neither capable of differentiating the fatty acids linked to the glycerol backbone nor able to define their bond type (ester, alkyl-, or alk-1-enyl-ether). This and other missing structural information is covered by the proposed shorthand notation presented here. Beyond GPs, we provide shorthand notation for fatty acids/acyls (FA), glycerolipids (GL), sphingolipids (SP), and sterols (ST). In summary, this defined shorthand nomenclature provides a standard methodology for reporting lipid species from mass spectrometric analysis and for constructing databases. |
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| AbstractList | There is a need for a standardized, practical annotation for structures of lipid species derived from mass spectrometric approaches; i.e., for high-throughput data obtained from instruments operating in either high- or low-resolution modes. This proposal is based on common, officially accepted terms and builds upon the LIPID MAPS terminology. It aims to add defined levels of information below the LIPID MAPS nomenclature, as detailed chemical structures, including stereochemistry, are usually not automatically provided by mass spectrometric analysis. To this end, rules for lipid species annotation were developed that reflect the structural information derived from the analysis. For example, commonly used head group-specific analysis of glycerophospholipids (GP) by low-resolution instruments is neither capable of differentiating the fatty acids linked to the glycerol backbone nor able to define their bond type (ester, alkyl-, or alk-1-enyl-ether). This and other missing structural information is covered by the proposed shorthand notation presented here. Beyond GPs, we provide shorthand notation for fatty acids/acyls (FA), glycerolipids (GL), sphingolipids (SP), and sterols (ST). In summary, this defined shorthand nomenclature provides a standard methodology for reporting lipid species from mass spectrometric analysis and for constructing databases. There is a need for a standardized, practical annotation for structures of lipid species derived from mass spectrometric approaches; i.e., for high-throughput data obtained from instruments operating in either high- or low-resolution modes. This proposal is based on common, officially accepted terms and builds upon the LIPID MAPS terminology. It aims to add defined levels of information below the LIPID MAPS nomenclature, as detailed chemical structures, including stereochemistry, are usually not automatically provided by mass spectrometric analysis. To this end, rules for lipid species annotation were developed that reflect the structural information derived from the analysis. For example, commonly used head group-specific analysis of glycerophospholipids (GP) by low-resolution instruments is neither capable of differentiating the fatty acids linked to the glycerol backbone nor able to define their bond type (ester, alkyl-, or alk-1-enyl-ether). This and other missing structural information is covered by the proposed shorthand notation presented here. Beyond GPs, we provide shorthand notation for fatty acids/acyls (FA), glycerolipids (GL), sphingolipids (SP), and sterols (ST). In summary, this defined shorthand nomenclature provides a standard methodology for reporting lipid species from mass spectrometric analysis and for constructing databases.There is a need for a standardized, practical annotation for structures of lipid species derived from mass spectrometric approaches; i.e., for high-throughput data obtained from instruments operating in either high- or low-resolution modes. This proposal is based on common, officially accepted terms and builds upon the LIPID MAPS terminology. It aims to add defined levels of information below the LIPID MAPS nomenclature, as detailed chemical structures, including stereochemistry, are usually not automatically provided by mass spectrometric analysis. To this end, rules for lipid species annotation were developed that reflect the structural information derived from the analysis. For example, commonly used head group-specific analysis of glycerophospholipids (GP) by low-resolution instruments is neither capable of differentiating the fatty acids linked to the glycerol backbone nor able to define their bond type (ester, alkyl-, or alk-1-enyl-ether). This and other missing structural information is covered by the proposed shorthand notation presented here. Beyond GPs, we provide shorthand notation for fatty acids/acyls (FA), glycerolipids (GL), sphingolipids (SP), and sterols (ST). In summary, this defined shorthand nomenclature provides a standard methodology for reporting lipid species from mass spectrometric analysis and for constructing databases. |
| Author | Trötzmüller, Martin Griffiths, William J Vizcaíno, Juan Antonio Köfeler, Harald Spener, Friedrich Schmitz, Gerd Wakelam, Michael J O Liebisch, Gerhard |
| Author_xml | – sequence: 1 givenname: Gerhard surname: Liebisch fullname: Liebisch, Gerhard email: gerhard.liebisch@klinik.uni-regensburg.de organization: Institute of Clinical Chemistry and Laboratory Medicine, University of Regensburg, Regensburg, Germany;. Electronic address: gerhard.liebisch@klinik.uni-regensburg.de – sequence: 2 givenname: Juan Antonio surname: Vizcaíno fullname: Vizcaíno, Juan Antonio organization: EMBL-European Bioinformatics Institute, Hinxton, Cambridge, United Kingdom – sequence: 3 givenname: Harald surname: Köfeler fullname: Köfeler, Harald organization: Core Facility Mass Spectrometry, Medical University of Graz, Graz, Austria – sequence: 4 givenname: Martin surname: Trötzmüller fullname: Trötzmüller, Martin organization: Core Facility Mass Spectrometry, Medical University of Graz, Graz, Austria – sequence: 5 givenname: William J surname: Griffiths fullname: Griffiths, William J organization: Institute of Mass Spectrometry, College of Medicine, Swansea University, Singleton Park, Swansea, United Kingdom; and – sequence: 6 givenname: Gerd surname: Schmitz fullname: Schmitz, Gerd organization: Institute of Clinical Chemistry and Laboratory Medicine, University of Regensburg, Regensburg, Germany – sequence: 7 givenname: Friedrich surname: Spener fullname: Spener, Friedrich organization: Institute of Molecular Biology and Biochemistry, and Medical University of Graz, Graz, Austria; Core Facility Mass Spectrometry, Medical University of Graz, Graz, Austria – sequence: 8 givenname: Michael J O surname: Wakelam fullname: Wakelam, Michael J O organization: Babraham Institute, Babraham Research Campus, Cambridge, United Kingdom |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/23549332$$D View this record in MEDLINE/PubMed |
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