Constructing Large 2D Lattices Out of DNA-Tiles

The predictable nature of deoxyribonucleic acid (DNA) interactions enables assembly of DNA into almost any arbitrary shape with programmable features of nanometer precision. The recent progress of DNA nanotechnology has allowed production of an even wider gamut of possible shapes with high-yield and...

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Vydané v:Molecules (Basel, Switzerland) Ročník 26; číslo 6; s. 1502
Hlavní autori: Parikka, Johannes M., Sokołowska, Karolina, Markešević, Nemanja, Toppari, J. Jussi
Médium: Journal Article
Jazyk:English
Vydavateľské údaje: Switzerland MDPI AG 10.03.2021
MDPI
Predmet:
complexity
Deoxyribonucleic acid
Design
DNA
DNA - chemical synthesis
DNA - chemistry
DNA nanotechnology
DNA origami
DNA self-assembly
hierarchy
Hydrogen bonds
lattice
Nanoparticles
Nanostructures - chemistry
Nanotechnology
Nanotechnology - methods
Proteins
Review
complexity
lattice
hierarchy
DNA self-assembly
DNA nanotechnology
DNA origami
lithography
ISSN:1420-3049, 1420-3049
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Abstract The predictable nature of deoxyribonucleic acid (DNA) interactions enables assembly of DNA into almost any arbitrary shape with programmable features of nanometer precision. The recent progress of DNA nanotechnology has allowed production of an even wider gamut of possible shapes with high-yield and error-free assembly processes. Most of these structures are, however, limited in size to a nanometer scale. To overcome this limitation, a plethora of studies has been carried out to form larger structures using DNA assemblies as building blocks or tiles. Therefore, DNA tiles have become one of the most widely used building blocks for engineering large, intricate structures with nanometer precision. To create even larger assemblies with highly organized patterns, scientists have developed a variety of structural design principles and assembly methods. This review first summarizes currently available DNA tile toolboxes and the basic principles of lattice formation and hierarchical self-assembly using DNA tiles. Special emphasis is given to the forces involved in the assembly process in liquid-liquid and at solid-liquid interfaces, and how to master them to reach the optimum balance between the involved interactions for successful self-assembly. In addition, we focus on the recent approaches that have shown great potential for the controlled immobilization and positioning of DNA nanostructures on different surfaces. The ability to position DNA objects in a controllable manner on technologically relevant surfaces is one step forward towards the integration of DNA-based materials into nanoelectronic and sensor devices.
AbstractList The predictable nature of deoxyribonucleic acid (DNA) interactions enables assembly of DNA into almost any arbitrary shape with programmable features of nanometer precision. The recent progress of DNA nanotechnology has allowed production of an even wider gamut of possible shapes with high-yield and error-free assembly processes. Most of these structures are, however, limited in size to a nanometer scale. To overcome this limitation, a plethora of studies has been carried out to form larger structures using DNA assemblies as building blocks or tiles. Therefore, DNA tiles have become one of the most widely used building blocks for engineering large, intricate structures with nanometer precision. To create even larger assemblies with highly organized patterns, scientists have developed a variety of structural design principles and assembly methods. This review first summarizes currently available DNA tile toolboxes and the basic principles of lattice formation and hierarchical self-assembly using DNA tiles. Special emphasis is given to the forces involved in the assembly process in liquid-liquid and at solid-liquid interfaces, and how to master them to reach the optimum balance between the involved interactions for successful self-assembly. In addition, we focus on the recent approaches that have shown great potential for the controlled immobilization and positioning of DNA nanostructures on different surfaces. The ability to position DNA objects in a controllable manner on technologically relevant surfaces is one step forward towards the integration of DNA-based materials into nanoelectronic and sensor devices.
The predictable nature of deoxyribonucleic acid (DNA) interactions enables assembly of DNA into almost any arbitrary shape with programmable features of nanometer precision. The recent progress of DNA nanotechnology has allowed production of an even wider gamut of possible shapes with high-yield and error-free assembly processes. Most of these structures are, however, limited in size to a nanometer scale. To overcome this limitation, a plethora of studies has been carried out to form larger structures using DNA assemblies as building blocks or tiles. Therefore, DNA tiles have become one of the most widely used building blocks for engineering large, intricate structures with nanometer precision. To create even larger assemblies with highly organized patterns, scientists have developed a variety of structural design principles and assembly methods. This review first summarizes currently available DNA tile toolboxes and the basic principles of lattice formation and hierarchical self-assembly using DNA tiles. Special emphasis is given to the forces involved in the assembly process in liquid-liquid and at solid-liquid interfaces, and how to master them to reach the optimum balance between the involved interactions for successful self-assembly. In addition, we focus on the recent approaches that have shown great potential for the controlled immobilization and positioning of DNA nanostructures on different surfaces. The ability to position DNA objects in a controllable manner on technologically relevant surfaces is one step forward towards the integration of DNA-based materials into nanoelectronic and sensor devices.The predictable nature of deoxyribonucleic acid (DNA) interactions enables assembly of DNA into almost any arbitrary shape with programmable features of nanometer precision. The recent progress of DNA nanotechnology has allowed production of an even wider gamut of possible shapes with high-yield and error-free assembly processes. Most of these structures are, however, limited in size to a nanometer scale. To overcome this limitation, a plethora of studies has been carried out to form larger structures using DNA assemblies as building blocks or tiles. Therefore, DNA tiles have become one of the most widely used building blocks for engineering large, intricate structures with nanometer precision. To create even larger assemblies with highly organized patterns, scientists have developed a variety of structural design principles and assembly methods. This review first summarizes currently available DNA tile toolboxes and the basic principles of lattice formation and hierarchical self-assembly using DNA tiles. Special emphasis is given to the forces involved in the assembly process in liquid-liquid and at solid-liquid interfaces, and how to master them to reach the optimum balance between the involved interactions for successful self-assembly. In addition, we focus on the recent approaches that have shown great potential for the controlled immobilization and positioning of DNA nanostructures on different surfaces. The ability to position DNA objects in a controllable manner on technologically relevant surfaces is one step forward towards the integration of DNA-based materials into nanoelectronic and sensor devices.
Author Toppari, J. Jussi
Sokołowska, Karolina
Parikka, Johannes M.
Markešević, Nemanja
AuthorAffiliation Nanoscience Center, Department of Physics, University of Jyväskylä, P.O. Box 35, 40014 Jyväskylä, Finland; johannes.m.parikka@jyu.fi (J.M.P.); karolina.x.sokolowska@jyu.fi (K.S.); nemanja.n.markesevic@jyu.fi (N.M.)
AuthorAffiliation_xml – name: Nanoscience Center, Department of Physics, University of Jyväskylä, P.O. Box 35, 40014 Jyväskylä, Finland; johannes.m.parikka@jyu.fi (J.M.P.); karolina.x.sokolowska@jyu.fi (K.S.); nemanja.n.markesevic@jyu.fi (N.M.)
Author_xml – sequence: 1
  givenname: Johannes M.
  surname: Parikka
  fullname: Parikka, Johannes M.
– sequence: 2
  givenname: Karolina
  surname: Sokołowska
  fullname: Sokołowska, Karolina
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  givenname: J. Jussi
  orcidid: 0000-0002-1698-5591
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  fullname: Toppari, J. Jussi
BackLink https://www.ncbi.nlm.nih.gov/pubmed/33801952$$D View this record in MEDLINE/PubMed
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Keywords complexity
lattice
hierarchy
DNA self-assembly
DNA nanotechnology
DNA origami
lithography
Language English
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Snippet The predictable nature of deoxyribonucleic acid (DNA) interactions enables assembly of DNA into almost any arbitrary shape with programmable features of...
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SubjectTerms complexity
Deoxyribonucleic acid
Design
DNA
DNA - chemical synthesis
DNA - chemistry
DNA nanotechnology
DNA origami
DNA self-assembly
hierarchy
Hydrogen bonds
lattice
Nanoparticles
Nanostructures - chemistry
Nanotechnology
Nanotechnology - methods
Proteins
Review
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Title Constructing Large 2D Lattices Out of DNA-Tiles
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