TimeTree 5: An Expanded Resource for Species Divergence Times

Abstract We present the fifth edition of the TimeTree of Life resource (TToL5), a product of the timetree of life project that aims to synthesize published molecular timetrees and make evolutionary knowledge easily accessible to all. Using the TToL5 web portal, users can retrieve published studies a...

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Vydané v:	Molecular biology and evolution Ročník 39; číslo 8
Hlavní autori:	Kumar, Sudhir, Suleski, Michael, Craig, Jack M, Kasprowicz, Adrienne E, Sanderford, Maxwell, Li, Michael, Stecher, Glen, Hedges, S Blair
Médium:	Journal Article
Jazyk:	English
Vydavateľské údaje:	United States Oxford University Press 01.08.2022
Predmet:	Accessibility Application programming interface Applications programming Chemical synthesis Disability rights Divergence Resources Source code Species Evolution molecular clocks systematics timetree
ISSN:	0737-4038, 1537-1719, 1537-1719
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Abstract	Abstract We present the fifth edition of the TimeTree of Life resource (TToL5), a product of the timetree of life project that aims to synthesize published molecular timetrees and make evolutionary knowledge easily accessible to all. Using the TToL5 web portal, users can retrieve published studies and divergence times between species, the timeline of a species’ evolution beginning with the origin of life, and the timetree for a given evolutionary group at the desired taxonomic rank. TToL5 contains divergence time information on 137,306 species, 41% more than the previous edition. The TToL5 web interface is now Americans with Disabilities Act-compliant and mobile-friendly, a result of comprehensive source code refactoring. TToL5 also offers programmatic access to species divergence times and timelines through an application programming interface, which is accessible at timetree.temple.edu/api. TToL5 is publicly available at timetree.org.
AbstractList	We present the fifth edition of the TimeTree of Life resource (TToL5), a product of the timetree of life project that aims to synthesize published molecular timetrees and make evolutionary knowledge easily accessible to all. Using the TToL5 web portal, users can retrieve published studies and divergence times between species, the timeline of a species’ evolution beginning with the origin of life, and the timetree for a given evolutionary group at the desired taxonomic rank. TToL5 contains divergence time information on 137,306 species, 41% more than the previous edition. The TToL5 web interface is now Americans with Disabilities Act-compliant and mobile-friendly, a result of comprehensive source code refactoring. TToL5 also offers programmatic access to species divergence times and timelines through an application programming interface, which is accessible at timetree.temple.edu/api. TToL5 is publicly available at timetree.org. We present the fifth edition of the TimeTree of Life resource (TToL5), a product of the timetree of life project that aims to synthesize published molecular timetrees and make evolutionary knowledge easily accessible to all. Using the TToL5 web portal, users can retrieve published studies and divergence times between species, the timeline of a species' evolution beginning with the origin of life, and the timetree for a given evolutionary group at the desired taxonomic rank. TToL5 contains divergence time information on 137,306 species, 41% more than the previous edition. The TToL5 web interface is now Americans with Disabilities Act-compliant and mobile-friendly, a result of comprehensive source code refactoring. TToL5 also offers programmatic access to species divergence times and timelines through an application programming interface, which is accessible at timetree.temple.edu/api. TToL5 is publicly available at timetree.org. Key words: Evolution, molecular clocks, systematics, timetree. We present the fifth edition of the TimeTree of Life resource (TToL5), a product of the timetree of life project that aims to synthesize published molecular timetrees and make evolutionary knowledge easily accessible to all. Using the TToL5 web portal, users can retrieve published studies and divergence times between species, the timeline of a species' evolution beginning with the origin of life, and the timetree for a given evolutionary group at the desired taxonomic rank. TToL5 contains divergence time information on 137,306 species, 41% more than the previous edition. The TToL5 web interface is now ADA-compliant and mobile-friendly, a result of comprehensive source code refactoring. TToL5 also offers programmatic access to species divergence times and timelines through an application programming interface, which is accessible at timetree.temple.edu/api. TToL5 is publicly available at timetree.org.We present the fifth edition of the TimeTree of Life resource (TToL5), a product of the timetree of life project that aims to synthesize published molecular timetrees and make evolutionary knowledge easily accessible to all. Using the TToL5 web portal, users can retrieve published studies and divergence times between species, the timeline of a species' evolution beginning with the origin of life, and the timetree for a given evolutionary group at the desired taxonomic rank. TToL5 contains divergence time information on 137,306 species, 41% more than the previous edition. The TToL5 web interface is now ADA-compliant and mobile-friendly, a result of comprehensive source code refactoring. TToL5 also offers programmatic access to species divergence times and timelines through an application programming interface, which is accessible at timetree.temple.edu/api. TToL5 is publicly available at timetree.org. Abstract We present the fifth edition of the TimeTree of Life resource (TToL5), a product of the timetree of life project that aims to synthesize published molecular timetrees and make evolutionary knowledge easily accessible to all. Using the TToL5 web portal, users can retrieve published studies and divergence times between species, the timeline of a species’ evolution beginning with the origin of life, and the timetree for a given evolutionary group at the desired taxonomic rank. TToL5 contains divergence time information on 137,306 species, 41% more than the previous edition. The TToL5 web interface is now Americans with Disabilities Act-compliant and mobile-friendly, a result of comprehensive source code refactoring. TToL5 also offers programmatic access to species divergence times and timelines through an application programming interface, which is accessible at timetree.temple.edu/api. TToL5 is publicly available at timetree.org. We present the fifth edition of the TimeTree of Life resource (TToL5), a product of the timetree of life project that aims to synthesize published molecular timetrees and make evolutionary knowledge easily accessible to all. Using the TToL5 web portal, users can retrieve published studies and divergence times between species, the timeline of a species' evolution beginning with the origin of life, and the timetree for a given evolutionary group at the desired taxonomic rank. TToL5 contains divergence time information on 137,306 species, 41% more than the previous edition. The TToL5 web interface is now ADA-compliant and mobile-friendly, a result of comprehensive source code refactoring. TToL5 also offers programmatic access to species divergence times and timelines through an application programming interface, which is accessible at timetree.temple.edu/api. TToL5 is publicly available at timetree.org.
Audience	Academic
Author	Hedges, S Blair Sanderford, Maxwell Stecher, Glen Kumar, Sudhir Li, Michael Suleski, Michael Kasprowicz, Adrienne E Craig, Jack M
Author_xml	– sequence: 1 givenname: Sudhir orcidid: 0000-0002-9918-8212 surname: Kumar fullname: Kumar, Sudhir email: s.kumar@temple.edu – sequence: 2 givenname: Michael surname: Suleski fullname: Suleski, Michael – sequence: 3 givenname: Jack M orcidid: 0000-0003-0590-5944 surname: Craig fullname: Craig, Jack M – sequence: 4 givenname: Adrienne E surname: Kasprowicz fullname: Kasprowicz, Adrienne E – sequence: 5 givenname: Maxwell surname: Sanderford fullname: Sanderford, Maxwell – sequence: 6 givenname: Michael surname: Li fullname: Li, Michael – sequence: 7 givenname: Glen surname: Stecher fullname: Stecher, Glen – sequence: 8 givenname: S Blair surname: Hedges fullname: Hedges, S Blair email: sbh@temple.edu
BackLink	https://www.ncbi.nlm.nih.gov/pubmed/35932227$$D View this record in MEDLINE/PubMed
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Copyright	The Author(s) 2022. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution. 2022 The Author(s) 2022. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution. COPYRIGHT 2022 Oxford University Press The Author(s) 2022. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution. This work is published under https://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
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References	Babaian (2022082411141719000_msac174-B2) 2020; 82 Duan (2022082411141719000_msac174-B3) 2021; 11 Kim (2022082411141719000_msac174-B6) 2013; 60 Hedges (2022082411141719000_msac174-B5) 2015; 32 Tonini (2022082411141719000_msac174-B15) 2016; 204 Schoch (2022082411141719000_msac174-B14) 2020; 2020 Babaian (2022082411141719000_msac174-B1) 2018; 80 Picciani (2022082411141719000_msac174-B12) 2018; 28 Rabosky (2022082411141719000_msac174-B13) 2018; 559 Pan (2022082411141719000_msac174-B11) 2020; 10 Kumar (2022082411141719000_msac174-B7) 2011; 27 Mello (2022082411141719000_msac174-B9) 2018; 35 Hedges (2022082411141719000_msac174-B4) 2006; 22 Mena (2022082411141719000_msac174-B10) 2020; 287 Kumar (2022082411141719000_msac174-B8) 2017; 34
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Snippet	Abstract We present the fifth edition of the TimeTree of Life resource (TToL5), a product of the timetree of life project that aims to synthesize published... We present the fifth edition of the TimeTree of Life resource (TToL5), a product of the timetree of life project that aims to synthesize published molecular...
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SubjectTerms	Accessibility Application programming interface Applications programming Chemical synthesis Disability rights Divergence Resources Source code Species
Title	TimeTree 5: An Expanded Resource for Species Divergence Times
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